Wall clock time and date at job start Tue Mar 31 2020 05:29:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00314 * 2 1 4 4 H 1.48497 * 109.47384 * 270.00185 * 3 2 1 5 5 H 1.48498 * 109.46838 * 30.00321 * 3 2 1 6 6 H 1.48504 * 109.47045 * 150.00113 * 3 2 1 7 7 C 1.37876 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00344 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00097 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47425 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47131 * 180.02562 * 10 9 7 12 12 C 1.53007 * 109.46983 * 299.99622 * 11 10 9 13 13 N 1.46899 * 109.46823 * 180.02562 * 12 11 10 14 14 C 1.46900 * 110.99595 * 155.00266 * 13 12 11 15 15 H 1.08997 * 109.47367 * 35.00069 * 14 13 12 16 16 C 1.52999 * 109.47139 * 154.99894 * 14 13 12 17 17 H 1.09008 * 109.47201 * 59.99540 * 16 14 13 18 18 O 1.42903 * 109.47256 * 300.00199 * 16 14 13 19 19 C 1.53001 * 109.47329 * 179.97438 * 16 14 13 20 20 C 1.52998 * 109.46901 * 299.99578 * 19 16 14 21 21 C 1.53009 * 109.46816 * 60.00484 * 20 19 16 22 22 C 1.52998 * 109.47261 * 274.99581 * 14 13 12 23 23 H 1.08997 * 109.47329 * 300.00512 * 22 14 13 24 24 O 1.42906 * 109.46648 * 60.00210 * 22 14 13 25 25 C 1.53000 * 109.46879 * 60.00223 * 12 11 10 26 26 C 1.53004 * 109.47421 * 299.99861 * 25 12 11 27 27 H 0.97004 * 119.99606 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.46923 * 59.99548 * 9 7 2 29 29 H 1.09002 * 109.46730 * 59.99415 * 10 9 7 30 30 H 1.09000 * 109.47091 * 299.99634 * 10 9 7 31 31 H 1.09002 * 109.47006 * 179.97438 * 11 10 9 32 32 H 1.08996 * 109.47090 * 59.99561 * 11 10 9 33 33 H 1.08996 * 109.46820 * 300.00600 * 12 11 10 34 34 H 1.00901 * 110.99755 * 278.95153 * 13 12 11 35 35 H 0.96700 * 114.00311 * 180.02562 * 18 16 14 36 36 H 1.08997 * 109.47215 * 60.00152 * 19 16 14 37 37 H 1.08999 * 109.47164 * 180.02562 * 19 16 14 38 38 H 1.09005 * 109.46908 * 179.97438 * 20 19 16 39 39 H 1.08997 * 109.47655 * 300.00305 * 20 19 16 40 40 H 1.08997 * 109.47155 * 59.99515 * 21 20 19 41 41 H 1.08997 * 109.46850 * 179.97438 * 21 20 19 42 42 H 0.96702 * 114.00010 * 180.02562 * 24 22 14 43 43 H 1.09002 * 109.47135 * 59.99635 * 25 12 11 44 44 H 1.09000 * 109.47091 * 180.02562 * 25 12 11 45 45 H 1.08996 * 109.46802 * 300.00441 * 26 25 12 46 46 H 1.08989 * 109.47203 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9871 -0.0033 12 6 0.5992 -5.0691 1.2450 13 7 -0.1349 -6.3415 1.2436 14 6 -0.5030 -6.7384 2.6092 15 1 -0.7330 -5.8494 3.1964 16 6 -1.7308 -7.6501 2.5619 17 1 -1.5008 -8.5391 1.9746 18 8 -2.8210 -6.9500 1.9591 19 6 -2.1138 -8.0640 3.9842 20 6 -0.9464 -8.8139 4.6289 21 6 0.2814 -7.9021 4.6763 22 6 0.6642 -7.4881 3.2546 23 1 0.8942 -8.3770 2.6673 24 8 1.8110 -6.6365 3.2987 25 6 -0.3950 -3.9061 1.2448 26 6 0.3700 -2.5811 1.2466 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 2.8712 -3.6047 0.8890 30 1 2.8725 -3.6041 -0.8910 31 1 2.1885 -5.8156 -0.0036 32 1 0.8545 -5.0441 -0.8939 33 1 1.2249 -5.0119 2.1357 34 1 -0.9494 -6.2883 0.6505 35 1 -3.6348 -7.4684 1.8963 36 1 -2.3437 -7.1752 4.5718 37 1 -2.9883 -8.7138 3.9504 38 1 -1.2192 -9.1084 5.6423 39 1 -0.7165 -9.7027 4.0413 40 1 0.0516 -7.0134 5.2639 41 1 1.1130 -8.4362 5.1360 42 1 2.5910 -7.0475 3.6961 43 1 -1.0207 -3.9632 0.3540 44 1 -1.0223 -3.9642 2.1343 45 1 0.9957 -2.5240 2.1372 46 1 -0.3383 -1.7527 1.2459 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332040.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:11 Heat of formation + Delta-G solvation = -132.297405 kcal Electronic energy + Delta-G solvation = -24034.501672 eV Core-core repulsion = 20729.212048 eV Total energy + Delta-G solvation = -3305.289623 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84456 -37.57604 -36.76282 -34.63989 -34.20075 -32.11846 -29.53685 -29.28521 -29.12492 -26.82558 -24.03350 -22.72545 -21.88292 -21.35306 -20.21936 -20.04207 -18.57409 -17.70185 -16.91161 -16.18308 -15.77091 -15.18817 -14.74141 -14.50215 -14.37245 -14.00244 -13.58219 -13.29805 -13.08055 -13.01833 -12.59298 -12.56560 -12.28233 -12.05380 -11.58624 -11.38936 -11.20218 -11.16946 -10.96231 -10.83692 -10.68235 -10.55917 -10.23882 -10.11150 -10.04091 -9.93267 -9.78262 -9.64382 -9.17422 -8.83248 -8.50992 -8.19811 -7.77557 -5.85290 -3.91156 3.37616 3.43868 3.47687 3.73588 4.23518 4.35024 4.53869 4.65597 4.76508 4.78840 4.93463 5.09967 5.20559 5.21721 5.27424 5.43533 5.49001 5.71693 5.72362 5.79173 5.84694 5.85681 5.87842 5.99891 6.18010 6.30536 6.41979 6.53571 6.64710 6.68466 6.88283 6.93522 7.02463 7.14841 7.32097 7.42283 7.47132 7.60919 7.72660 7.76306 7.88866 7.96844 8.19369 8.31888 8.62702 9.13545 9.72630 11.19925 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027666 B = 0.003994 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.814243 B = 7009.215103 C = 7304.632700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.107 4.107 11 C -0.096 4.096 12 C 0.090 3.910 13 N -0.678 5.678 14 C 0.103 3.897 15 H 0.056 0.944 16 C 0.106 3.894 17 H 0.062 0.938 18 O -0.561 6.561 19 C -0.153 4.153 20 C -0.114 4.114 21 C -0.157 4.157 22 C 0.121 3.879 23 H 0.058 0.942 24 O -0.548 6.548 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.257 0.743 28 H 0.022 0.978 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.342 0.658 35 H 0.378 0.622 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.370 0.630 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.030 0.970 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -19.933 8.924 22.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.141 4.141 3 Si 0.716 3.284 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.071 0.929 9 C 0.030 3.970 10 C -0.145 4.145 11 C -0.134 4.134 12 C -0.018 4.018 13 N -0.309 5.309 14 C -0.007 4.007 15 H 0.074 0.926 16 C 0.046 3.954 17 H 0.080 0.920 18 O -0.366 6.366 19 C -0.191 4.191 20 C -0.151 4.151 21 C -0.195 4.195 22 C 0.061 3.939 23 H 0.076 0.924 24 O -0.353 6.353 25 C -0.179 4.179 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.162 0.838 35 H 0.225 0.775 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.217 0.783 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.049 0.951 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.191 -19.304 8.580 21.364 hybrid contribution -0.427 0.700 0.618 1.027 sum -3.618 -18.603 9.197 21.066 Atomic orbital electron populations 1.69898 1.05831 1.26050 1.51299 1.24973 0.94805 0.98893 0.95418 0.86670 0.79926 0.83870 0.77965 1.20830 1.21384 1.20009 1.21283 0.92859 0.90915 1.49739 0.92876 1.18648 0.92653 0.91525 0.94145 1.21602 0.98556 0.94520 0.99810 1.21430 0.97774 0.97625 0.96616 1.21758 0.94772 0.85410 0.99890 1.60684 1.28289 1.33814 1.08070 1.21295 0.90363 0.96848 0.92243 0.92614 1.21847 0.86928 0.94363 0.92229 0.91961 1.86541 1.22676 1.44421 1.82978 1.22302 0.98546 1.01109 0.97165 1.21398 0.94525 0.98218 1.00988 1.22362 0.98367 1.00366 0.98444 1.21690 0.86381 0.92583 0.93266 0.92393 1.86652 1.21511 1.42586 1.84562 1.22249 0.98075 0.98102 0.99464 1.21520 0.99338 0.94695 0.98636 0.93256 0.95956 0.93543 0.93742 0.93354 0.93440 0.88984 0.83843 0.77461 0.90884 0.91424 0.91411 0.91645 0.91003 0.91419 0.78339 0.93256 0.94656 0.95077 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.49 11.32 55.43 0.63 -25.86 16 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.65 8.56 -34.44 -0.29 -14.95 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.05 1.28 2.10 -91.77 -0.19 1.09 16 10 C -0.11 -2.41 5.14 -26.73 -0.14 -2.54 16 11 C -0.10 -1.90 5.53 -26.73 -0.15 -2.05 16 12 C 0.09 1.73 2.05 -67.71 -0.14 1.59 16 13 N -0.68 -10.98 6.05 -99.74 -0.60 -11.58 16 14 C 0.10 1.43 1.94 -67.71 -0.13 1.30 16 15 H 0.06 0.93 7.11 -51.93 -0.37 0.56 16 16 C 0.11 1.14 3.02 -26.73 -0.08 1.06 16 17 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 18 O -0.56 -6.46 12.46 -35.23 -0.44 -6.90 16 19 C -0.15 -1.29 5.55 -26.73 -0.15 -1.44 16 20 C -0.11 -0.86 5.92 -26.73 -0.16 -1.02 16 21 C -0.16 -1.41 5.54 -26.75 -0.15 -1.56 16 22 C 0.12 1.41 3.12 -26.76 -0.08 1.33 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 O -0.55 -7.29 10.80 -35.23 -0.38 -7.67 16 25 C -0.14 -3.00 5.16 -26.73 -0.14 -3.14 16 26 C -0.10 -2.61 4.98 -26.73 -0.13 -2.74 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.09 1.88 5.65 -51.93 -0.29 1.58 16 34 H 0.34 5.68 7.38 -39.29 -0.29 5.39 16 35 H 0.38 2.54 9.08 45.56 0.41 2.96 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.37 3.24 9.08 45.56 0.41 3.66 16 43 H 0.05 1.09 8.13 -51.93 -0.42 0.66 16 44 H 0.03 0.74 7.43 -51.93 -0.39 0.35 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.09 2.47 6.07 -51.94 -0.32 2.16 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.14 345.36 -9.35 -41.49 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.71 Total: 9.76 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.03 Total: -21.46 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.02 Total: -37.44 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.82 Total: -14.56 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.14 -9.35 -41.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332040.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.809 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds