Wall clock time and date at job start Tue Mar 31 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42888 * 109.52497 * 2 1 4 4 C 1.50725 * 109.52310 * 120.20047 * 2 1 3 5 5 O 1.44227 * 112.85197 * 211.41801 * 4 2 1 6 6 C 1.43932 * 116.11532 * 318.69331 * 5 4 2 7 7 C 1.50733 * 111.87878 * 319.24429 * 6 5 4 8 8 N 1.47600 * 108.45436 * 93.37984 * 7 6 5 9 9 C 1.46901 * 110.99979 * 152.96745 * 8 7 6 10 10 C 1.53004 * 109.46705 * 188.85022 * 9 8 7 11 11 C 1.52999 * 109.46883 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47370 * 59.99667 * 11 10 9 13 13 C 1.50705 * 109.46996 * 60.00118 * 12 11 10 14 14 H 1.07992 * 119.99886 * 240.00087 * 13 12 11 15 15 C 1.37881 * 119.99979 * 60.00041 * 13 12 11 16 16 N 1.31514 * 119.99633 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99940 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47226 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47127 * 210.00288 * 17 15 13 20 20 H 1.48507 * 109.47233 * 329.99837 * 17 15 13 21 21 C 1.53004 * 109.47389 * 300.00023 * 12 11 10 22 22 C 1.53002 * 109.47030 * 68.85115 * 9 8 7 23 23 C 1.40459 * 114.43097 * 279.55200 * 8 7 6 24 24 H 1.09000 * 109.46662 * 180.13550 * 1 2 3 25 25 H 1.08999 * 109.47018 * 60.13660 * 1 2 3 26 26 H 1.08993 * 109.46748 * 300.13458 * 1 2 3 27 27 H 0.96706 * 114.00452 * 59.99904 * 3 2 1 28 28 H 1.08999 * 108.81160 * 332.29535 * 4 2 1 29 29 H 1.09008 * 108.80777 * 90.55200 * 4 2 1 30 30 H 1.08999 * 109.00014 * 198.62405 * 6 5 4 31 31 H 1.09004 * 108.99859 * 79.86445 * 6 5 4 32 32 H 1.08997 * 109.64370 * 333.68591 * 7 6 5 33 33 H 1.09005 * 109.81026 * 213.16608 * 7 6 5 34 34 H 1.08997 * 109.46955 * 308.84512 * 9 8 7 35 35 H 1.08997 * 109.46998 * 299.99463 * 10 9 8 36 36 H 1.09000 * 109.47087 * 60.00301 * 10 9 8 37 37 H 1.09006 * 109.47151 * 300.00117 * 11 10 9 38 38 H 1.09002 * 109.47539 * 180.02562 * 11 10 9 39 39 H 1.08998 * 109.47222 * 180.02562 * 12 11 10 40 40 H 0.96999 * 119.99511 * 179.97438 * 16 15 13 41 41 H 1.08997 * 109.46998 * 300.00422 * 21 12 11 42 42 H 1.08992 * 109.47358 * 179.97438 * 21 12 11 43 43 H 1.08994 * 109.46717 * 299.99616 * 22 9 8 44 44 H 1.08996 * 109.47004 * 59.99950 * 22 9 8 45 45 H 1.08995 * 109.08394 * 300.74126 * 23 8 7 46 46 H 1.08996 * 109.08617 * 181.74524 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0076 1.3467 0.0000 4 6 2.0338 -0.7146 1.2278 5 8 3.2900 -0.1907 1.7049 6 6 4.2652 0.1331 0.6971 7 6 4.3043 -0.9006 -0.3993 8 7 3.4061 -0.4633 -1.4859 9 6 3.8406 -1.0079 -2.7792 10 6 3.0274 -0.3626 -3.9033 11 6 3.4794 -0.9302 -5.2502 12 6 3.2591 -2.4442 -5.2656 13 6 1.7957 -2.7409 -5.0611 14 1 1.4776 -3.3306 -4.2142 15 6 0.8632 -2.2594 -5.9553 16 7 1.2507 -1.5417 -6.9869 17 14 -0.9506 -2.6266 -5.7014 18 1 -1.5607 -1.5572 -4.8710 19 1 -1.6338 -2.6809 -7.0188 20 1 -1.0994 -3.9338 -5.0125 21 6 4.0723 -3.0894 -4.1416 22 6 3.6206 -2.5219 -2.7949 23 6 2.0461 -0.7306 -1.2585 24 1 -0.3632 -1.0277 0.0024 25 1 -0.3633 0.5117 -0.8912 26 1 -0.3632 0.5159 0.8887 27 1 1.7228 1.8651 0.7651 28 1 1.2903 -0.6202 2.0192 29 1 2.1606 -1.7713 0.9921 30 1 5.2491 0.1946 1.1621 31 1 4.0184 1.1019 0.2628 32 1 3.9672 -1.8611 -0.0096 33 1 5.3210 -0.9964 -0.7806 34 1 4.8989 -0.7928 -2.9269 35 1 1.9691 -0.5776 -3.7556 36 1 3.1842 0.7160 -3.8921 37 1 4.5379 -0.7157 -5.3982 38 1 2.9005 -0.4703 -6.0511 39 1 3.5815 -2.8486 -6.2250 40 1 0.5947 -1.2034 -7.6162 41 1 5.1306 -2.8748 -4.2895 42 1 3.9149 -4.1679 -4.1522 43 1 4.1999 -2.9814 -1.9942 44 1 2.5623 -2.7368 -2.6473 45 1 1.9109 -1.8042 -1.1278 46 1 1.4690 -0.4024 -2.1229 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173332296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:21 Heat of formation + Delta-G solvation = -91.738781 kcal Electronic energy + Delta-G solvation = -25129.164530 eV Core-core repulsion = 21825.633661 eV Total energy + Delta-G solvation = -3303.530869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42037 -38.10548 -36.09051 -35.25037 -32.34110 -32.10240 -30.00697 -29.31662 -27.96228 -26.51501 -25.46690 -24.40893 -21.95631 -21.13308 -20.49426 -19.83146 -18.43235 -17.16922 -16.37683 -16.03981 -15.79652 -15.22554 -14.86341 -14.61817 -14.51479 -13.71123 -13.55036 -13.37900 -13.12210 -12.85447 -12.66332 -12.57012 -12.04583 -11.89172 -11.53122 -11.51137 -11.41599 -11.20862 -10.99432 -10.94642 -10.88794 -10.55659 -10.44049 -10.27711 -10.14924 -9.97569 -9.53056 -9.21172 -9.01006 -8.87832 -8.61929 -8.26622 -7.64737 -5.96258 -4.00667 3.27557 3.35782 3.37438 3.81138 4.14556 4.34000 4.43446 4.66838 4.82443 5.01675 5.25525 5.29960 5.34149 5.44352 5.55217 5.57910 5.61222 5.69986 5.70928 5.87006 5.90061 5.96245 6.07605 6.10023 6.18712 6.33063 6.40106 6.49760 6.51925 6.63268 6.75134 6.79356 6.87345 7.04903 7.16108 7.20645 7.43245 7.58276 7.59992 7.70054 7.76037 7.90097 7.98066 8.18962 8.49900 9.01476 9.62218 11.09608 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.006267 C = 0.005312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.374730 B = 4466.984398 C = 5269.727981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 O -0.528 6.528 4 C 0.035 3.965 5 O -0.392 6.392 6 C 0.057 3.943 7 C 0.030 3.970 8 N -0.536 5.536 9 C 0.097 3.903 10 C -0.091 4.091 11 C -0.107 4.107 12 C 0.043 3.957 13 C -0.500 4.500 14 H 0.052 0.948 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.880 3.120 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.102 4.102 22 C -0.136 4.136 23 C 0.080 3.920 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.059 0.941 27 H 0.365 0.635 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.092 0.908 39 H 0.024 0.976 40 H 0.259 0.741 41 H 0.033 0.967 42 H 0.043 0.957 43 H 0.032 0.968 44 H 0.071 0.929 45 H 0.036 0.964 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.271 3.261 14.322 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.059 3.941 3 O -0.333 6.333 4 C -0.042 4.042 5 O -0.311 6.311 6 C -0.019 4.019 7 C -0.098 4.098 8 N -0.258 5.258 9 C -0.010 4.010 10 C -0.129 4.129 11 C -0.145 4.145 12 C 0.025 3.975 13 C -0.539 4.539 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.709 3.291 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.141 4.141 22 C -0.175 4.175 23 C -0.050 4.050 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.211 0.789 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.110 0.890 39 H 0.042 0.958 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.542 3.656 13.780 14.481 hybrid contribution -1.523 -1.086 0.412 1.915 sum 1.019 2.571 14.192 14.459 Atomic orbital electron populations 1.22434 0.94918 1.03024 1.02953 1.21806 0.93056 0.83864 0.95372 1.86750 1.75897 1.22020 1.48590 1.23048 0.86467 0.97643 0.97030 1.88176 1.24015 1.85231 1.33719 1.22616 0.90657 1.00049 0.88570 1.22337 0.97939 0.96688 0.92788 1.59306 1.01866 1.62079 1.02565 1.21788 0.99060 0.92576 0.87599 1.21450 1.00237 0.97249 0.93979 1.21515 0.96794 0.99398 0.96838 1.18697 0.94327 0.91706 0.92786 1.21106 0.91352 1.32059 1.09345 0.92991 1.24921 0.98270 0.95378 0.95279 1.69863 1.33503 1.35867 1.13589 0.86778 0.86228 0.78617 0.77507 1.20749 1.21298 1.20110 1.21483 0.97752 0.98926 0.95896 1.22060 1.01780 0.96291 0.97392 1.21224 0.90516 0.96273 0.96983 0.91434 0.90920 0.92172 0.78907 0.89732 0.92936 0.90439 0.89086 0.94176 0.90071 0.91345 0.91080 0.94055 0.96761 0.89003 0.95833 0.93138 0.94845 0.93792 0.94907 0.91092 0.94661 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.99 8.55 37.16 0.32 -1.67 16 2 C 0.10 1.32 0.98 -91.02 -0.09 1.23 16 3 O -0.53 -7.12 9.66 -54.56 -0.53 -7.64 16 4 C 0.04 0.43 5.65 36.02 0.20 0.64 16 5 O -0.39 -5.37 10.66 -54.56 -0.58 -5.95 16 6 C 0.06 0.76 6.23 36.02 0.22 0.98 16 7 C 0.03 0.42 4.46 -4.58 -0.02 0.40 16 8 N -0.54 -8.70 3.69 -231.60 -0.86 -9.55 16 9 C 0.10 1.75 2.14 -67.71 -0.15 1.60 16 10 C -0.09 -1.91 4.74 -26.73 -0.13 -2.03 16 11 C -0.11 -2.47 5.23 -26.73 -0.14 -2.61 16 12 C 0.04 1.04 2.59 -91.77 -0.24 0.81 16 13 C -0.50 -13.03 6.61 -34.44 -0.23 -13.26 16 14 H 0.05 1.35 6.71 -52.49 -0.35 1.00 16 15 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 16 N -0.89 -24.84 11.32 55.43 0.63 -24.21 16 17 Si 0.88 20.80 29.54 -169.99 -5.02 15.78 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C -0.10 -2.10 5.41 -26.75 -0.14 -2.24 16 22 C -0.14 -2.54 4.38 -26.75 -0.12 -2.66 16 23 C 0.08 1.28 3.43 -6.43 -0.02 1.26 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 27 H 0.36 3.63 9.04 45.56 0.41 4.04 16 28 H 0.08 0.88 7.70 -51.93 -0.40 0.48 16 29 H 0.05 0.68 6.61 -51.92 -0.34 0.33 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 32 H 0.04 0.59 6.66 -51.93 -0.35 0.24 16 33 H 0.08 1.08 7.65 -51.93 -0.40 0.69 16 34 H 0.07 1.22 7.84 -51.93 -0.41 0.82 16 35 H 0.07 1.63 5.32 -51.93 -0.28 1.35 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.03 0.55 7.34 -51.93 -0.38 0.17 16 44 H 0.07 1.44 5.05 -51.93 -0.26 1.18 16 45 H 0.04 0.59 6.06 -51.93 -0.31 0.27 16 46 H 0.09 1.74 5.63 -51.93 -0.29 1.44 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -28.02 326.99 -8.97 -36.99 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -6.92 Total: 5.65 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -0.62 Total: -15.98 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: -0.23 Total: -33.77 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.11 Total: -13.60 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.02 -8.97 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173332296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.749 kcal (2) G-P(sol) polarization free energy of solvation -28.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds