Wall clock time and date at job start Tue Mar 31 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36934 * 120.00001 * 2 1 4 4 H 1.08001 * 119.99355 * 200.40045 * 3 2 1 5 5 C 1.38806 * 120.00529 * 20.39360 * 3 2 1 6 6 N 1.31618 * 119.99551 * 14.98226 * 5 3 2 7 7 Si 1.86798 * 120.00312 * 194.98159 * 5 3 2 8 8 H 1.48494 * 109.47211 * 85.00081 * 7 5 3 9 9 H 1.48503 * 109.46896 * 205.00571 * 7 5 3 10 10 H 1.48505 * 109.46923 * 325.00178 * 7 5 3 11 11 C 1.46503 * 119.99479 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46588 * 300.00199 * 11 2 1 13 13 C 1.53008 * 109.46692 * 179.97438 * 12 11 2 14 14 C 1.52989 * 109.44651 * 300.00971 * 13 12 11 15 15 C 1.52994 * 109.47631 * 60.06535 * 14 13 12 16 16 C 1.52987 * 109.46819 * 60.03257 * 11 2 1 17 17 O 1.42943 * 109.48985 * 180.08873 * 14 13 12 18 18 C 1.43086 * 113.78785 * 61.29634 * 17 14 13 19 19 C 1.53257 * 108.95531 * 57.91246 * 18 17 14 20 20 C 1.53000 * 109.57528 * 65.27421 * 19 18 17 21 21 C 1.53005 * 109.57877 * 185.52802 * 19 18 17 22 22 C 1.53257 * 108.95124 * 305.40283 * 19 18 17 23 23 O 1.42963 * 109.44786 * 300.13261 * 14 13 12 24 24 H 1.08993 * 109.47749 * 275.12069 * 1 2 3 25 25 H 1.09010 * 109.46860 * 35.11927 * 1 2 3 26 26 H 1.08996 * 109.47295 * 155.11137 * 1 2 3 27 27 H 0.97009 * 119.99956 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.45510 * 180.02562 * 11 2 1 29 29 H 1.08999 * 109.46689 * 59.98227 * 12 11 2 30 30 H 1.08993 * 109.47350 * 299.97859 * 12 11 2 31 31 H 1.09005 * 109.47428 * 180.02562 * 13 12 11 32 32 H 1.09004 * 109.47337 * 60.00018 * 13 12 11 33 33 H 1.08993 * 109.47827 * 59.92043 * 15 14 13 34 34 H 1.09005 * 109.47770 * 179.97438 * 15 14 13 35 35 H 1.08995 * 109.47503 * 300.01579 * 16 11 2 36 36 H 1.09004 * 109.46801 * 60.01731 * 16 11 2 37 37 H 1.09004 * 109.55481 * 298.07150 * 18 17 14 38 38 H 1.08999 * 109.55500 * 177.75832 * 18 17 14 39 39 H 1.08998 * 109.47333 * 180.25724 * 20 19 18 40 40 H 1.09000 * 109.47430 * 300.25508 * 20 19 18 41 41 H 1.09001 * 109.47332 * 60.25727 * 20 19 18 42 42 H 1.09001 * 109.46953 * 299.74974 * 21 19 18 43 43 H 1.09001 * 109.46638 * 59.74691 * 21 19 18 44 44 H 1.08998 * 109.47712 * 179.74490 * 21 19 18 45 45 H 1.08996 * 109.56408 * 174.45625 * 22 19 18 46 46 H 1.09007 * 109.55859 * 294.78618 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1789 1.2151 -0.3261 5 6 1.5210 2.3504 0.4189 6 7 0.3881 2.2833 1.0855 7 14 2.2827 4.0126 0.0365 8 1 1.8681 4.4464 -1.3218 9 1 1.8231 5.0095 1.0365 10 1 3.7627 3.9031 0.0908 11 6 2.1974 -1.2688 0.0006 12 6 1.8276 -2.0705 1.2502 13 6 2.5920 -3.3959 1.2505 14 6 2.2216 -4.1978 0.0014 15 6 2.5929 -3.3965 -1.2479 16 6 1.8283 -2.0712 -1.2486 17 8 2.9337 -5.4372 0.0018 18 6 2.6310 -6.2764 1.1205 19 6 1.1251 -6.5606 1.1366 20 6 0.7450 -7.3807 -0.0979 21 6 0.7642 -7.3416 2.4018 22 6 0.3670 -5.2288 1.1215 23 8 0.8153 -4.4552 0.0007 24 1 -0.3634 0.0917 1.0235 25 1 -0.3633 0.8407 -0.5913 26 1 -0.3634 -0.9322 -0.4325 27 1 -0.0511 3.0971 1.3786 28 1 3.2690 -1.0694 0.0009 29 1 0.7558 -2.2692 1.2503 30 1 2.0912 -1.4987 2.1399 31 1 2.3283 -3.9673 2.1405 32 1 3.6638 -3.1973 1.2502 33 1 3.6645 -3.1978 -1.2470 34 1 2.3294 -3.9680 -2.1379 35 1 0.7567 -2.2700 -1.2493 36 1 2.0924 -1.4998 -2.1386 37 1 2.9169 -5.7715 2.0433 38 1 3.1785 -7.2147 1.0314 39 1 -0.3269 -7.5780 -0.0872 40 1 1.0027 -6.8229 -0.9982 41 1 1.2884 -8.3256 -0.0879 42 1 1.3077 -8.2864 2.4130 43 1 1.0356 -6.7559 3.2801 44 1 -0.3077 -7.5389 2.4138 45 1 -0.7027 -5.4186 1.0335 46 1 0.5679 -4.6841 2.0441 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258525691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:39 Heat of formation + Delta-G solvation = -84.197216 kcal Electronic energy + Delta-G solvation = -24688.433557 eV Core-core repulsion = 21385.229715 eV Total energy + Delta-G solvation = -3303.203842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82145 -37.57218 -35.57004 -35.37248 -33.55929 -30.81692 -30.54482 -27.75792 -27.42424 -26.12207 -26.07010 -25.86158 -22.89837 -22.25398 -20.97128 -19.09114 -18.42595 -17.18302 -16.64546 -16.24611 -15.67248 -15.38885 -14.94501 -14.79601 -14.13974 -13.83125 -13.51367 -13.20623 -12.99441 -12.78489 -12.51170 -12.41122 -12.23842 -12.12316 -12.00757 -11.74397 -11.57619 -11.32878 -11.10324 -10.97382 -10.87742 -10.72771 -10.65365 -10.59631 -10.26758 -10.10774 -10.02150 -9.75047 -9.66482 -9.43511 -9.08924 -8.45847 -6.68423 -5.64535 -3.07638 3.42845 3.48911 3.49755 3.69711 3.81027 4.40256 4.50939 4.55434 4.79171 4.88511 5.00463 5.07098 5.28067 5.33721 5.36893 5.47604 5.48251 5.54427 5.61190 5.66269 5.68942 5.74330 5.76063 5.84394 5.88690 5.91909 5.97171 6.04145 6.19912 6.23819 6.33084 6.36489 6.44515 6.70379 6.72714 6.91515 6.96369 7.14553 7.16882 7.42931 7.50404 7.81581 7.88712 8.47185 9.32010 9.97044 10.46019 11.40184 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.004198 C = 0.004080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.624239 B = 6668.620237 C = 6861.298788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.596 5.596 3 C -0.251 4.251 4 H 0.068 0.932 5 C -0.001 4.001 6 N -0.908 5.908 7 Si 0.902 3.098 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.281 1.281 11 C 0.179 3.821 12 C -0.122 4.122 13 C -0.164 4.164 14 C 0.277 3.723 15 C -0.087 4.087 16 C -0.127 4.127 17 O -0.387 6.387 18 C 0.066 3.934 19 C -0.136 4.136 20 C -0.130 4.130 21 C -0.139 4.139 22 C 0.065 3.935 23 O -0.372 6.372 24 H 0.026 0.974 25 H 0.039 0.961 26 H 0.002 0.998 27 H 0.251 0.749 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -19.224 0.704 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.318 5.318 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.554 5.554 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.207 1.207 11 C 0.071 3.929 12 C -0.162 4.162 13 C -0.203 4.203 14 C 0.201 3.799 15 C -0.125 4.125 16 C -0.166 4.166 17 O -0.308 6.308 18 C -0.010 4.010 19 C -0.136 4.136 20 C -0.187 4.187 21 C -0.197 4.197 22 C -0.012 4.012 23 O -0.292 6.292 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.020 0.980 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.110 0.890 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.112 0.888 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.573 -19.020 0.477 19.091 hybrid contribution 0.263 0.816 0.484 0.984 sum 1.836 -18.204 0.961 18.322 Atomic orbital electron populations 1.20728 0.82725 0.95451 0.99144 1.43958 1.01839 1.00194 1.85785 1.19251 0.96883 0.85119 1.36832 0.91417 1.24935 0.97944 0.98204 0.98767 1.70100 1.18945 1.26585 1.39741 0.86302 0.78586 0.84256 0.77587 1.21561 1.21882 1.20651 1.20327 0.95702 0.85999 0.90889 1.22001 0.99918 0.93230 1.01036 1.22547 1.02094 0.98398 0.97264 1.22781 0.77484 0.82977 0.96675 1.21352 1.01020 0.95766 0.94369 1.22017 1.00690 0.93389 1.00510 1.88106 1.65795 1.30858 1.46000 1.22671 0.93739 0.94846 0.89766 1.21790 0.97238 0.97263 0.97354 1.21692 1.00749 0.98874 0.97421 1.21742 1.01922 0.99875 0.96133 1.22741 0.98901 0.89447 0.90119 1.88208 1.23682 1.71837 1.45442 0.95572 0.94232 0.97971 0.93912 0.92256 0.91943 0.91849 0.92292 0.90612 0.90305 0.91231 0.91276 0.91572 0.92756 0.88989 0.92797 0.91439 0.92960 0.92193 0.92414 0.92045 0.88799 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.15 8.00 59.85 0.48 4.63 16 2 N -0.60 -15.12 2.81 -173.49 -0.49 -15.60 16 3 C -0.25 -6.98 9.61 -15.06 -0.14 -7.13 16 4 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 5 C 0.00 -0.02 5.06 -17.43 -0.09 -0.11 16 6 N -0.91 -26.87 10.67 55.49 0.59 -26.28 16 7 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 8 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 C 0.18 3.71 2.59 -67.93 -0.18 3.53 16 12 C -0.12 -2.30 5.06 -26.72 -0.14 -2.43 16 13 C -0.16 -2.52 4.22 -26.73 -0.11 -2.64 16 14 C 0.28 4.20 1.07 -26.74 -0.03 4.17 16 15 C -0.09 -1.35 5.32 -26.73 -0.14 -1.49 16 16 C -0.13 -2.30 5.05 -26.73 -0.13 -2.43 16 17 O -0.39 -5.54 9.88 -59.03 -0.58 -6.13 16 18 C 0.07 0.75 5.27 37.29 0.20 0.95 16 19 C -0.14 -1.42 0.79 -154.24 -0.12 -1.54 16 20 C -0.13 -1.34 8.29 37.16 0.31 -1.03 16 21 C -0.14 -1.12 8.50 37.16 0.32 -0.81 16 22 C 0.06 0.81 5.30 37.29 0.20 1.01 16 23 O -0.37 -5.78 8.51 -59.03 -0.50 -6.29 16 24 H 0.03 0.71 7.40 -51.93 -0.38 0.33 16 25 H 0.04 1.07 7.22 -51.92 -0.37 0.70 16 26 H 0.00 0.04 6.44 -51.93 -0.33 -0.29 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.06 1.24 7.85 -51.93 -0.41 0.84 16 29 H 0.06 1.23 7.20 -51.93 -0.37 0.86 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.06 0.82 5.12 -51.93 -0.27 0.56 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.33 6.20 -51.93 -0.32 1.01 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.05 0.59 6.53 -51.93 -0.34 0.25 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.84 7.48 -51.93 -0.39 0.45 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.71 6.54 -51.92 -0.34 0.37 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -30.19 338.69 -8.64 -38.83 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -8.15 Total: -1.44 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 0.41 Total: -5.32 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.10 Total: -41.88 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.09 Total: -12.41 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.19 -8.64 -38.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258525691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.369 kcal (2) G-P(sol) polarization free energy of solvation -30.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds