Wall clock time and date at job start Tue Mar 31 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 C 1.53002 * 109.47192 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46818 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46708 * 184.75435 * 5 4 3 7 7 H 1.09003 * 109.47058 * 306.79363 * 6 5 4 8 8 C 1.52999 * 109.46948 * 186.79301 * 6 5 4 9 9 C 1.53004 * 109.47062 * 64.89533 * 8 6 5 10 10 C 1.50697 * 109.47187 * 66.79463 * 6 5 4 11 11 O 1.21283 * 120.00119 * 0.02562 * 10 6 5 12 12 N 1.34775 * 120.00125 * 179.97438 * 10 6 5 13 13 C 1.47073 * 136.05868 * 179.97438 * 12 10 6 14 14 C 1.53496 * 88.04521 * 207.12882 * 13 12 10 15 15 O 1.42899 * 114.20821 * 87.55307 * 14 13 12 16 16 C 1.50705 * 114.20294 * 220.37097 * 14 13 12 17 17 H 1.07997 * 120.00374 * 0.02562 * 16 14 13 18 18 C 1.37880 * 119.99781 * 180.02562 * 16 14 13 19 19 N 1.31517 * 120.00052 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99783 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47338 * 60.00318 * 20 18 16 22 22 H 1.48502 * 109.47161 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47197 * 300.00275 * 20 18 16 24 24 C 1.47074 * 136.05620 * 0.05371 * 12 10 6 25 25 H 1.09004 * 109.46956 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46645 * 299.99280 * 1 2 3 27 27 H 1.08997 * 109.46961 * 59.99735 * 1 2 3 28 28 H 1.09000 * 109.47158 * 240.00154 * 2 1 3 29 29 H 1.09001 * 109.47406 * 120.00440 * 2 1 3 30 30 H 1.09000 * 109.46943 * 60.00023 * 3 2 1 31 31 H 1.09001 * 109.47305 * 300.00502 * 3 2 1 32 32 H 1.09002 * 109.46645 * 60.00720 * 4 3 2 33 33 H 1.08997 * 109.46961 * 300.00265 * 4 3 2 34 34 H 1.08994 * 109.47025 * 64.75902 * 5 4 3 35 35 H 1.08999 * 109.47679 * 304.75087 * 5 4 3 36 36 H 1.09004 * 109.47404 * 184.89364 * 8 6 5 37 37 H 1.08995 * 109.47740 * 304.89855 * 8 6 5 38 38 H 1.09000 * 109.47329 * 54.79651 * 9 8 6 39 39 H 1.08997 * 109.47183 * 174.79293 * 9 8 6 40 40 H 1.08995 * 109.47194 * 294.79401 * 9 8 6 41 41 H 1.08992 * 113.46681 * 321.94207 * 13 12 10 42 42 H 1.08999 * 113.46378 * 92.31681 * 13 12 10 43 43 H 0.96697 * 114.00542 * 179.97438 * 15 14 13 44 44 H 0.96994 * 119.99619 * 180.02562 * 19 18 16 45 45 H 1.08999 * 113.46758 * 267.62278 * 24 12 10 46 46 H 1.08994 * 113.46728 * 38.00294 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6053 2.8867 -0.1202 7 1 6.0315 2.2486 0.6540 8 6 6.1287 4.3143 0.0502 9 6 5.8317 4.8002 1.4703 10 6 6.0029 2.3645 -1.4768 11 8 5.1502 2.0249 -2.2696 12 7 7.3059 2.2758 -1.8094 13 6 8.0710 1.8361 -2.9859 14 6 9.2304 1.4956 -2.0394 15 8 9.1711 0.1774 -1.4908 16 6 10.5915 1.8614 -2.5729 17 1 10.6844 2.3224 -3.5451 18 6 11.7182 1.6076 -1.8199 19 7 11.6051 1.0457 -0.6361 20 14 13.4053 2.0617 -2.4809 21 1 13.4622 3.5246 -2.7296 22 1 14.4435 1.6873 -1.4873 23 1 13.6514 1.3337 -3.7516 24 6 8.5886 2.5749 -1.1549 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8910 33 1 3.9337 0.9285 0.8891 34 1 3.7883 3.3730 0.9299 35 1 3.6485 3.4234 -0.8438 36 1 7.2050 4.3296 -0.1215 37 1 5.6368 4.9698 -0.6684 38 1 6.2454 4.0938 2.1900 39 1 6.2849 5.7800 1.6212 40 1 4.7534 4.8731 1.6113 41 1 7.6437 0.9639 -3.4804 42 1 8.3008 2.6438 -3.6808 43 1 9.9030 -0.0341 -0.8953 44 1 12.3977 0.8675 -0.1063 45 1 8.9573 3.5797 -1.3612 46 1 8.6010 2.3315 -0.0925 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321050883.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:15 Heat of formation + Delta-G solvation = -88.393881 kcal Electronic energy + Delta-G solvation = -23257.712585 eV Core-core repulsion = 19954.326761 eV Total energy + Delta-G solvation = -3303.385823 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.84224 -37.95940 -36.03590 -34.85696 -33.98939 -32.19801 -31.49609 -29.12319 -27.80739 -25.76540 -25.12702 -24.38451 -21.96310 -21.33332 -20.82861 -19.62590 -18.20116 -17.40022 -16.55575 -15.65313 -15.36554 -14.99683 -14.81437 -14.40065 -14.12804 -13.99204 -13.72676 -13.28936 -13.17257 -12.79928 -12.71211 -12.30144 -12.24154 -12.04168 -11.81268 -11.56620 -11.50668 -11.46687 -11.15150 -11.05260 -10.99730 -10.90957 -10.69989 -10.52622 -10.49366 -10.29772 -10.25789 -10.07506 -9.51355 -9.04072 -8.76528 -8.35984 -7.78907 -6.41040 -4.51384 3.15042 3.21092 3.22927 3.26938 3.63841 4.17236 4.71554 4.81039 4.91444 4.98416 5.03389 5.11015 5.16461 5.34910 5.42918 5.51571 5.53411 5.60273 5.68478 5.78196 5.80754 5.82323 5.88961 5.95906 5.97594 6.08704 6.11074 6.12529 6.18607 6.22870 6.27878 6.33997 6.37770 6.44610 6.51770 6.56331 6.68523 6.70810 6.72249 7.11614 7.62107 7.80370 8.51192 8.59318 8.85198 9.20008 9.49021 10.65480 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024218 B = 0.003714 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.894029 B = 7537.028736 C = 8067.923306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.127 4.127 5 C -0.096 4.096 6 C -0.101 4.101 7 H 0.092 0.908 8 C -0.118 4.118 9 C -0.149 4.149 10 C 0.539 3.461 11 O -0.561 6.561 12 N -0.633 5.633 13 C 0.105 3.895 14 C 0.240 3.760 15 O -0.571 6.571 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.909 3.091 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.073 3.927 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.083 0.917 43 H 0.393 0.607 44 H 0.274 0.726 45 H 0.079 0.921 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.563 4.162 5.005 13.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.151 4.151 4 C -0.164 4.164 5 C -0.133 4.133 6 C -0.122 4.122 7 H 0.110 0.890 8 C -0.156 4.156 9 C -0.206 4.206 10 C 0.329 3.671 11 O -0.442 6.442 12 N -0.366 5.366 13 C -0.017 4.017 14 C 0.198 3.802 15 O -0.384 6.384 16 C -0.572 4.572 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.539 5.539 20 Si 0.736 3.264 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.050 4.050 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.250 0.750 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.655 3.896 4.466 13.974 hybrid contribution 1.501 0.349 0.171 1.551 sum -11.153 4.245 4.637 12.803 Atomic orbital electron populations 1.21777 0.96298 1.01248 1.01536 1.21542 0.95368 0.97424 1.02060 1.21552 0.95901 0.96296 1.01395 1.21724 0.94892 0.96952 1.02848 1.21424 0.92697 0.97579 1.01644 1.21311 0.97543 0.97792 0.95559 0.89023 1.21525 1.01930 0.94429 0.97684 1.21799 1.01457 1.00983 0.96386 1.20050 0.80289 0.77922 0.88871 1.90597 1.49017 1.51592 1.52963 1.49718 1.04024 1.62806 1.20067 1.23296 0.89814 0.98256 0.90347 1.19555 0.91164 0.81003 0.88473 1.86045 1.54168 1.30880 1.67355 1.21406 0.90215 1.41139 1.04439 0.91028 1.25078 1.00034 0.93633 0.94302 1.69254 1.30951 1.42728 1.10959 0.86371 0.82081 0.79103 0.78866 1.19881 1.20982 1.19835 1.24183 0.79813 1.01676 0.99309 0.93057 0.93012 0.92868 0.91927 0.92268 0.92695 0.92158 0.90008 0.92858 0.91711 0.91467 0.90918 0.91831 0.92519 0.92674 0.92578 0.91726 0.89917 0.75021 0.91532 0.90273 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.13 -1.42 5.93 -26.73 -0.16 -1.58 16 3 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 4 C -0.13 -1.81 5.01 -26.73 -0.13 -1.94 16 5 C -0.10 -1.33 4.22 -26.73 -0.11 -1.44 16 6 C -0.10 -1.58 2.06 -91.77 -0.19 -1.77 16 7 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 8 C -0.12 -1.62 5.33 -26.73 -0.14 -1.76 16 9 C -0.15 -1.65 9.54 37.16 0.35 -1.30 16 10 C 0.54 10.80 7.09 -10.99 -0.08 10.73 16 11 O -0.56 -12.60 14.88 5.55 0.08 -12.52 16 12 N -0.63 -13.31 3.63 -184.99 -0.67 -13.99 16 13 C 0.11 2.32 8.03 -8.49 -0.07 2.25 16 14 C 0.24 5.73 1.59 -91.21 -0.14 5.58 16 15 O -0.57 -14.76 13.54 -35.23 -0.48 -15.23 16 16 C -0.53 -13.25 8.69 -34.44 -0.30 -13.55 16 17 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 18 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 19 N -0.90 -22.52 11.01 55.43 0.61 -21.91 16 20 Si 0.91 19.23 29.54 -169.99 -5.02 14.21 16 21 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 C 0.07 1.55 6.12 -8.44 -0.05 1.50 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 1.44 6.05 -51.93 -0.31 1.12 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.75 6.38 -51.93 -0.33 0.42 16 35 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 36 H 0.07 1.08 6.18 -51.93 -0.32 0.76 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.56 6.67 -51.93 -0.35 0.21 16 41 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 42 H 0.08 1.67 8.10 -51.93 -0.42 1.25 16 43 H 0.39 10.23 6.32 45.56 0.29 10.52 16 44 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 45 H 0.08 1.59 8.00 -51.93 -0.42 1.18 16 46 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 363.76 15.07 5.48 5.48 Total: -1.00 -27.04 363.76 -8.62 -35.66 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -7.73 Total: 12.48 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -0.89 Total: -4.18 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: -0.06 Total: -35.89 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.39 Total: -27.76 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.21 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.04 -8.62 -35.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321050883.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.731 kcal (2) G-P(sol) polarization free energy of solvation -27.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds