Wall clock time and date at job start Tue Mar 31 2020 06:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47293 * 2 1 4 4 C 1.52994 * 109.47325 * 180.02562 * 3 2 1 5 5 C 1.53009 * 109.47183 * 180.02562 * 4 3 2 6 6 C 1.52998 * 109.46845 * 180.02562 * 5 4 3 7 7 C 1.53009 * 109.46845 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46915 * 304.99585 * 7 6 5 9 9 C 1.52995 * 109.46995 * 64.99437 * 7 6 5 10 10 C 1.50692 * 109.47078 * 184.99914 * 7 6 5 11 11 O 1.21278 * 120.00081 * 326.01119 * 10 7 6 12 12 N 1.34780 * 120.00337 * 146.01383 * 10 7 6 13 13 C 1.47061 * 136.06005 * 184.73817 * 12 10 7 14 14 C 1.53754 * 87.88923 * 152.95983 * 13 12 10 15 15 O 1.42901 * 114.39714 * 272.67679 * 14 13 12 16 16 C 1.50697 * 114.26763 * 139.79088 * 14 13 12 17 17 H 1.08003 * 119.99924 * 266.47439 * 16 14 13 18 18 C 1.37880 * 120.00144 * 86.47932 * 16 14 13 19 19 N 1.31516 * 119.99888 * 359.97438 * 18 16 14 20 20 Si 1.86799 * 120.00092 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47078 * 90.00060 * 20 18 16 22 22 H 1.48494 * 109.46976 * 209.99742 * 20 18 16 23 23 H 1.48499 * 109.47096 * 330.00048 * 20 18 16 24 24 C 1.47066 * 136.05323 * 5.10389 * 12 10 7 25 25 H 1.08998 * 109.47249 * 59.99494 * 1 2 3 26 26 H 1.09002 * 109.47242 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47003 * 299.99890 * 1 2 3 28 28 H 1.09004 * 109.47173 * 240.00679 * 2 1 3 29 29 H 1.08998 * 109.47756 * 120.00363 * 2 1 3 30 30 H 1.08995 * 109.47006 * 60.00112 * 3 2 1 31 31 H 1.09007 * 109.47210 * 300.00292 * 3 2 1 32 32 H 1.08998 * 109.47740 * 60.00170 * 4 3 2 33 33 H 1.09007 * 109.47410 * 299.99956 * 4 3 2 34 34 H 1.08995 * 109.47449 * 59.99546 * 5 4 3 35 35 H 1.09004 * 109.46579 * 299.99268 * 5 4 3 36 36 H 1.09004 * 109.46873 * 299.99013 * 6 5 4 37 37 H 1.08995 * 109.47529 * 59.99521 * 6 5 4 38 38 H 1.08997 * 109.47015 * 54.38139 * 9 7 6 39 39 H 1.09002 * 109.46622 * 174.37429 * 9 7 6 40 40 H 1.09003 * 109.47376 * 294.37005 * 9 7 6 41 41 H 1.08994 * 113.46894 * 267.69499 * 13 12 10 42 42 H 1.08999 * 113.47145 * 38.13603 * 13 12 10 43 43 H 0.96697 * 114.00159 * 273.57983 * 15 14 13 44 44 H 0.96989 * 119.99805 * 180.02562 * 19 18 16 45 45 H 1.08996 * 113.47234 * 321.86975 * 24 12 10 46 46 H 1.09003 * 113.46498 * 92.24754 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6100 2.8850 -0.0013 7 6 6.1200 4.3276 -0.0013 8 1 5.6847 4.8668 -0.8427 9 6 5.7162 5.0112 1.3065 10 6 7.6217 4.3294 -0.1264 11 8 8.2737 3.4424 0.3826 12 7 8.2404 5.3167 -0.8038 13 6 9.6214 5.6187 -1.2094 14 6 9.0404 6.4126 -2.3910 15 8 8.7812 5.6293 -3.5578 16 6 9.7641 7.7008 -2.6871 17 1 9.4181 8.6268 -2.2520 18 6 10.8677 7.6975 -3.5137 19 7 11.2891 6.5698 -4.0432 20 14 11.7642 9.2945 -3.8813 21 1 12.8311 9.5072 -2.8705 22 1 12.3717 9.2209 -5.2342 23 1 10.8024 10.4249 -3.8313 24 6 7.8324 6.5695 -1.4572 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9285 0.8891 34 1 3.7170 3.3984 0.8903 35 1 3.7163 3.3993 -0.8896 36 1 5.9740 2.3706 0.8881 37 1 5.9726 2.3718 -0.8919 38 1 6.0670 4.4172 2.1504 39 1 6.1635 6.0043 1.3504 40 1 4.6307 5.0995 1.3503 41 1 10.1587 6.2389 -0.4921 42 1 10.1872 4.7378 -1.5127 43 1 9.5441 5.5324 -4.1440 44 1 12.0656 6.5674 -4.6244 45 1 6.8740 6.4988 -1.9715 46 1 7.8971 7.4404 -0.8048 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324914525.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:20 Heat of formation + Delta-G solvation = -91.818889 kcal Electronic energy + Delta-G solvation = -22475.127593 eV Core-core repulsion = 19171.593250 eV Total energy + Delta-G solvation = -3303.534343 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70965 -37.86044 -36.66112 -34.74604 -33.99444 -32.18292 -31.83763 -28.77450 -27.91455 -25.71907 -25.11067 -24.83169 -22.52879 -21.16889 -20.75114 -19.70464 -18.11549 -17.35650 -16.43001 -16.06358 -15.42668 -15.01731 -14.89786 -14.59261 -14.23599 -14.14820 -13.69441 -13.41003 -13.13614 -12.85525 -12.79068 -12.60206 -12.24612 -12.02756 -11.85776 -11.73620 -11.63320 -11.54723 -11.15069 -11.11098 -11.07890 -10.95913 -10.77386 -10.69854 -10.46817 -10.46202 -10.38913 -10.25317 -9.65816 -8.99790 -8.74119 -8.36892 -7.80866 -6.39156 -4.49990 3.14593 3.22491 3.24355 3.26568 3.60857 4.17902 4.52485 4.70968 4.82751 4.84140 4.91785 4.96741 5.02321 5.19636 5.28711 5.36846 5.44936 5.50068 5.55051 5.61395 5.67688 5.72596 5.76938 5.83004 5.85902 5.93912 5.97225 6.01497 6.04063 6.04214 6.18660 6.21076 6.28400 6.31348 6.42001 6.45447 6.48802 6.76357 6.82337 7.12158 7.63603 7.80357 8.51974 8.58023 8.84400 9.21188 9.48752 10.67580 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.033232 B = 0.002770 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.358336 B =10105.889372 C =10328.766544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.100 4.100 7 C -0.104 4.104 8 H 0.086 0.914 9 C -0.137 4.137 10 C 0.538 3.462 11 O -0.564 6.564 12 N -0.635 5.635 13 C 0.077 3.923 14 C 0.240 3.760 15 O -0.572 6.572 16 C -0.534 4.534 17 H 0.072 0.928 18 C 0.071 3.929 19 N -0.897 5.897 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.270 1.270 24 C 0.101 3.899 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.062 0.938 43 H 0.395 0.605 44 H 0.274 0.726 45 H 0.065 0.935 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.417 -5.455 6.640 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.138 4.138 7 C -0.125 4.125 8 H 0.105 0.895 9 C -0.194 4.194 10 C 0.328 3.672 11 O -0.445 6.445 12 N -0.368 5.368 13 C -0.046 4.046 14 C 0.198 3.802 15 O -0.386 6.386 16 C -0.573 4.573 17 H 0.091 0.909 18 C -0.132 4.132 19 N -0.537 5.537 20 Si 0.736 3.264 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.195 1.195 24 C -0.022 4.022 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.251 0.749 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -15.618 -6.212 7.144 18.264 hybrid contribution 1.179 0.847 -0.432 1.514 sum -14.440 -5.365 6.712 16.803 Atomic orbital electron populations 1.21781 0.96098 1.01410 1.01736 1.21552 0.95651 0.97226 1.01991 1.21629 0.95681 0.96489 1.01951 1.21610 0.94962 0.97071 1.02186 1.21648 0.95258 0.96656 1.02070 1.21426 0.94654 0.94559 1.03187 1.21199 0.92552 0.98631 1.00152 0.89541 1.21711 1.01384 1.00380 0.95962 1.20072 0.89469 0.80928 0.76752 1.90619 1.67677 1.37846 1.48312 1.49810 1.12645 1.21273 1.53064 1.24183 0.83637 0.99078 0.97656 1.19577 0.89223 0.88856 0.82513 1.86003 1.43441 1.73660 1.35447 1.21420 1.12120 0.93642 1.30083 0.90942 1.25101 0.96368 0.97219 0.94484 1.69269 1.26110 1.25920 1.32411 0.86306 0.79623 0.82601 0.77834 1.20298 1.20882 1.19509 1.23372 1.00401 0.85077 0.93345 0.92794 0.92961 0.92850 0.92071 0.92136 0.92146 0.92058 0.91972 0.92032 0.91786 0.91986 0.91026 0.91768 0.92117 0.92465 0.91640 0.90508 0.91941 0.74867 0.91544 0.91633 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.99 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.01 5.21 -26.73 -0.14 -1.15 16 4 C -0.12 -1.17 5.21 -26.73 -0.14 -1.31 16 5 C -0.12 -1.27 4.97 -26.73 -0.13 -1.41 16 6 C -0.10 -1.40 4.25 -26.73 -0.11 -1.52 16 7 C -0.10 -1.61 2.61 -91.77 -0.24 -1.85 16 8 H 0.09 1.29 7.64 -51.93 -0.40 0.89 16 9 C -0.14 -1.76 8.79 37.15 0.33 -1.43 16 10 C 0.54 11.11 7.08 -10.99 -0.08 11.03 16 11 O -0.56 -13.47 17.13 5.56 0.10 -13.37 16 12 N -0.64 -13.69 3.69 -185.07 -0.68 -14.37 16 13 C 0.08 1.82 8.05 -8.38 -0.07 1.75 16 14 C 0.24 5.79 1.58 -91.12 -0.14 5.64 16 15 O -0.57 -14.82 13.55 -35.23 -0.48 -15.30 16 16 C -0.53 -13.34 8.70 -34.44 -0.30 -13.64 16 17 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 18 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 19 N -0.90 -23.21 11.01 55.43 0.61 -22.59 16 20 Si 0.91 19.46 29.54 -169.99 -5.02 14.44 16 21 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 22 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 23 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 24 C 0.10 2.04 7.68 -8.51 -0.07 1.98 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.63 6.69 -51.93 -0.35 0.28 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 1.05 8.02 -51.93 -0.42 0.64 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.67 6.85 -51.93 -0.36 0.32 16 41 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 42 H 0.06 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.39 10.48 6.32 45.56 0.29 10.76 16 44 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 45 H 0.07 1.24 7.86 -51.93 -0.41 0.83 16 46 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -28.38 371.30 -8.80 -37.18 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.94 Total: 10.46 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -0.98 Total: -2.04 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.07 Total: -36.97 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.38 Total: -28.67 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.38 -8.80 -37.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324914525.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.637 kcal (2) G-P(sol) polarization free energy of solvation -28.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds