Wall clock time and date at job start Tue Mar 31 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00097 * 2 1 4 4 H 1.48494 * 109.47100 * 239.99688 * 3 2 1 5 5 H 1.48499 * 109.47170 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47109 * 119.99812 * 3 2 1 7 7 C 1.37877 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99679 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00508 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47144 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47034 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47208 * 179.97438 * 11 10 9 13 13 C 1.50702 * 109.46959 * 180.02562 * 12 11 10 14 14 O 1.21280 * 120.00182 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99850 * 180.02562 * 13 12 11 16 16 C 1.46494 * 120.00354 * 180.02562 * 15 13 12 17 17 C 1.52999 * 109.47795 * 179.97438 * 16 15 13 18 18 C 1.53000 * 109.47540 * 179.97438 * 17 16 15 19 19 C 1.53175 * 109.53913 * 65.44548 * 18 17 16 20 20 C 1.53092 * 109.16179 * 176.85000 * 19 18 17 21 21 O 1.42910 * 109.41107 * 302.39040 * 20 19 18 22 22 C 1.42900 * 114.09727 * 61.16189 * 21 20 19 23 23 C 1.53090 * 109.41229 * 298.83586 * 22 21 20 24 24 H 0.97001 * 119.99928 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.46399 * 60.00237 * 9 7 2 26 26 H 1.08997 * 109.47003 * 300.00460 * 9 7 2 27 27 H 1.08996 * 109.47079 * 60.00033 * 10 9 7 28 28 H 1.09005 * 109.47147 * 300.00261 * 10 9 7 29 29 H 1.09009 * 109.47020 * 59.99848 * 11 10 9 30 30 H 1.08997 * 109.47032 * 300.00082 * 11 10 9 31 31 H 1.08996 * 109.46706 * 60.00124 * 12 11 10 32 32 H 1.08997 * 109.47477 * 300.00160 * 12 11 10 33 33 H 0.97002 * 120.00038 * 359.97438 * 15 13 12 34 34 H 1.09009 * 109.46956 * 59.99811 * 16 15 13 35 35 H 1.09005 * 109.47149 * 300.00230 * 16 15 13 36 36 H 1.09005 * 109.46474 * 59.99873 * 17 16 15 37 37 H 1.09005 * 109.47030 * 300.00389 * 17 16 15 38 38 H 1.08997 * 109.61228 * 305.22843 * 18 17 16 39 39 H 1.09006 * 109.52647 * 296.75300 * 19 18 17 40 40 H 1.08998 * 109.52537 * 56.94192 * 19 18 17 41 41 H 1.08998 * 109.48147 * 182.40843 * 20 19 18 42 42 H 1.08997 * 109.48550 * 62.37144 * 20 19 18 43 43 H 1.09003 * 109.47953 * 178.86010 * 22 21 20 44 44 H 1.08995 * 109.49265 * 58.82602 * 22 21 20 45 45 H 1.09001 * 109.52724 * 297.70937 * 23 22 21 46 46 H 1.09000 * 109.52338 * 177.51272 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4993 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4802 -4.9872 -0.0012 12 6 2.4744 -6.1501 -0.0018 13 6 1.7208 -7.4552 -0.0031 14 8 0.5080 -7.4552 -0.0039 15 7 2.3946 -8.6224 -0.0033 16 6 1.6622 -9.8911 -0.0051 17 6 2.6563 -11.0541 -0.0056 18 6 1.8913 -12.3791 -0.0069 19 6 1.1161 -12.5219 -1.3202 20 6 0.4176 -13.8839 -1.3460 21 8 1.3906 -14.9196 -1.1941 22 6 2.1138 -14.8646 0.0371 23 6 2.8804 -13.5420 0.1184 24 1 -0.4850 0.8401 -0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6246 -2.5571 0.8896 27 1 2.8718 -3.6044 0.8894 28 1 2.8719 -3.6044 -0.8905 29 1 0.8537 -5.0446 -0.8915 30 1 0.8532 -5.0451 0.8885 31 1 3.1010 -6.0928 0.8882 32 1 3.1010 -6.0920 -0.8917 33 1 3.3647 -8.6224 -0.0030 34 1 1.0364 -9.9481 -0.8959 35 1 1.0345 -9.9496 0.8842 36 1 3.2824 -10.9972 0.8849 37 1 3.2837 -10.9954 -0.8951 38 1 1.1952 -12.4004 0.8316 39 1 0.3713 -11.7292 -1.3917 40 1 1.8067 -12.4507 -2.1605 41 1 -0.1007 -14.0087 -2.2967 42 1 -0.3022 -13.9389 -0.5294 43 1 2.8174 -15.6959 0.0828 44 1 1.4163 -14.9324 0.8719 45 1 3.6067 -13.4914 -0.6928 46 1 3.3974 -13.4788 1.0759 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325287697.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:46 Heat of formation + Delta-G solvation = -133.082650 kcal Electronic energy + Delta-G solvation = -21406.481445 eV Core-core repulsion = 18101.157771 eV Total energy + Delta-G solvation = -3305.323674 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.06941 -39.50024 -36.44051 -34.88039 -34.15044 -32.60262 -31.58662 -30.42241 -29.25136 -26.07056 -24.84997 -23.99137 -22.51305 -21.84773 -20.66558 -20.07053 -19.91943 -16.82047 -16.70488 -16.47748 -16.19278 -16.04046 -15.78067 -15.40221 -15.10571 -14.53303 -14.43385 -14.18663 -13.63460 -13.53466 -12.86453 -12.74610 -12.56908 -12.31845 -12.23393 -11.83727 -11.74016 -11.66142 -11.56712 -11.34314 -10.95526 -10.83895 -10.71773 -10.52594 -10.50708 -10.38952 -9.99647 -9.76520 -9.59289 -9.20166 -9.15311 -8.97228 -8.28808 -5.93680 -3.96257 2.74798 3.11305 3.36163 3.40476 3.42751 3.45322 4.14027 4.20747 4.34528 4.50059 4.53243 4.68572 4.75895 4.85218 4.90889 4.99723 5.06155 5.11885 5.24274 5.27698 5.33954 5.37823 5.40182 5.41748 5.42320 5.54180 5.61637 5.65199 5.76969 5.89087 5.91495 6.15990 6.31425 6.34176 6.56946 6.75662 6.86090 7.04117 7.21886 7.44509 7.75470 7.91941 8.07763 8.28299 8.49458 9.11221 9.67146 11.17582 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.063240 B = 0.001871 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.653563 B =14963.776384 C =15227.787792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.103 4.103 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.536 6.536 15 N -0.740 5.740 16 C 0.117 3.883 17 C -0.125 4.125 18 C -0.087 4.087 19 C -0.156 4.156 20 C 0.059 3.941 21 O -0.385 6.385 22 C 0.060 3.940 23 C -0.151 4.151 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.073 0.927 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.058 -30.741 0.050 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.148 4.148 11 C -0.141 4.141 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.412 6.412 15 N -0.394 5.394 16 C -0.007 4.007 17 C -0.163 4.163 18 C -0.106 4.106 19 C -0.193 4.193 20 C -0.017 4.017 21 O -0.304 6.304 22 C -0.017 4.017 23 C -0.188 4.188 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.111 0.889 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 6.029 -30.757 -0.089 31.343 hybrid contribution 0.921 1.178 0.240 1.514 sum 6.950 -29.579 0.151 30.385 Atomic orbital electron populations 1.69969 1.06036 1.26599 1.50851 1.25047 0.94854 0.99221 0.95477 0.86663 0.79561 0.83250 0.78525 1.20306 1.21322 1.20304 1.21252 0.92942 0.91222 1.50509 0.92812 1.19097 0.94073 0.91266 0.97319 1.21651 0.99076 0.94027 1.00049 1.21450 0.97030 0.92722 1.02938 1.21793 1.00086 0.92057 1.03939 1.21115 0.88459 0.85630 0.74991 1.90704 1.14285 1.87718 1.48490 1.46113 1.10233 1.05783 1.77249 1.21358 0.94727 0.82240 1.02376 1.21826 0.98180 0.93292 1.02954 1.21128 0.97238 0.93898 0.98291 1.22342 1.00687 0.98229 0.98077 1.22605 0.90323 0.86703 1.02097 1.87940 1.52987 1.50663 1.38773 1.22577 0.94939 0.97519 0.86679 1.22247 0.98683 0.94914 1.03001 0.93002 0.96578 0.96593 0.93487 0.93490 0.91828 0.91831 0.89179 0.89176 0.76710 0.91475 0.91736 0.91050 0.91053 0.90626 0.90273 0.90813 0.88769 0.93107 0.88901 0.93181 0.90860 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.88 4.50 -26.73 -0.12 -2.00 16 12 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 13 C 0.51 7.15 7.83 -10.98 -0.09 7.06 16 14 O -0.54 -9.91 15.98 5.56 0.09 -9.82 16 15 N -0.74 -7.25 5.56 -60.29 -0.33 -7.59 16 16 C 0.12 1.03 5.44 -4.05 -0.02 1.01 16 17 C -0.12 -0.73 4.80 -26.73 -0.13 -0.85 16 18 C -0.09 -0.50 2.27 -90.44 -0.21 -0.70 16 19 C -0.16 -0.98 5.10 -26.59 -0.14 -1.12 16 20 C 0.06 0.39 6.84 37.21 0.25 0.64 16 21 O -0.38 -3.17 10.77 -35.23 -0.38 -3.55 16 22 C 0.06 0.35 6.84 37.20 0.25 0.60 16 23 C -0.15 -0.78 5.42 -26.59 -0.14 -0.92 16 24 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 25 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 30 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.40 2.70 8.47 -40.82 -0.35 2.36 16 34 H 0.07 0.66 6.66 -51.92 -0.35 0.32 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.51 6.75 -51.93 -0.35 0.16 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -34.61 368.45 -9.15 -43.76 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -8.61 Total: -4.15 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -1.18 Total: -14.27 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.40 Total: -34.53 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.29 Total: -13.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.61 -9.15 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325287697.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.320 kcal (2) G-P(sol) polarization free energy of solvation -34.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds