Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46768 * 2 1 4 4 C 1.53010 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47082 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46811 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47213 * 305.00862 * 6 5 4 8 8 O 1.42904 * 109.46798 * 65.00094 * 6 5 4 9 9 C 1.50697 * 109.46893 * 185.00219 * 6 5 4 10 10 O 1.21288 * 119.99996 * 246.77498 * 9 6 5 11 11 N 1.34774 * 119.99813 * 66.77854 * 9 6 5 12 12 C 1.37097 * 120.00292 * 5.73129 * 11 9 6 13 13 H 1.08004 * 119.99940 * 232.66222 * 12 11 9 14 14 C 1.38954 * 119.99997 * 52.66438 * 12 11 9 15 15 N 1.31409 * 119.99737 * 19.87037 * 14 12 11 16 16 Si 1.86800 * 119.99927 * 199.86701 * 14 12 11 17 17 H 1.48502 * 109.47225 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.46857 * 120.00034 * 16 14 12 19 19 H 1.48494 * 109.47194 * 240.00042 * 16 14 12 20 20 C 1.46507 * 119.99894 * 185.72949 * 11 9 6 21 21 C 1.55235 * 110.47022 * 232.44463 * 20 11 9 22 22 C 1.54889 * 102.58833 * 203.39490 * 21 20 11 23 23 C 1.54271 * 104.31088 * 37.92998 * 22 21 20 24 24 C 1.53865 * 106.60051 * 336.32491 * 23 22 21 25 25 H 1.08998 * 109.47101 * 60.00103 * 1 2 3 26 26 H 1.09000 * 109.46976 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47503 * 300.00214 * 1 2 3 28 28 H 1.09000 * 109.47503 * 239.99786 * 2 1 3 29 29 H 1.09005 * 109.47079 * 119.99520 * 2 1 3 30 30 H 1.08993 * 109.47705 * 60.00179 * 3 2 1 31 31 H 1.08998 * 109.47225 * 299.99821 * 3 2 1 32 32 H 1.09007 * 109.46527 * 59.99522 * 4 3 2 33 33 H 1.09001 * 109.46715 * 300.00397 * 4 3 2 34 34 H 1.09002 * 109.46909 * 60.00879 * 5 4 3 35 35 H 1.08998 * 109.47555 * 300.00251 * 5 4 3 36 36 H 0.96700 * 113.99643 * 60.00455 * 8 6 5 37 37 H 0.97000 * 120.00064 * 179.97438 * 15 14 12 38 38 H 1.09003 * 110.43314 * 355.09566 * 20 11 9 39 39 H 1.08999 * 110.90031 * 85.10006 * 21 20 11 40 40 H 1.08998 * 110.76483 * 321.62688 * 21 20 11 41 41 H 1.09002 * 110.48346 * 279.18757 * 22 21 20 42 42 H 1.08997 * 110.48639 * 156.67674 * 22 21 20 43 43 H 1.09004 * 110.02925 * 95.61179 * 23 22 21 44 44 H 1.08996 * 110.02996 * 216.99092 * 23 22 21 45 45 H 1.09007 * 110.03377 * 119.28070 * 24 23 22 46 46 H 1.09002 * 110.03768 * 240.66598 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 6 5.6100 2.8852 0.0013 7 1 5.9726 2.2963 0.8438 8 8 6.0873 2.3149 -1.2190 9 6 6.1121 4.3007 0.1245 10 8 6.7055 4.8162 -0.7991 11 7 5.9018 4.9937 1.2612 12 6 5.3366 4.3754 2.3465 13 1 4.4707 4.8089 2.8246 14 6 5.8779 3.1910 2.8312 15 7 7.1152 2.8636 2.5331 16 14 4.8468 2.0643 3.9068 17 1 3.4975 2.6558 4.0926 18 1 4.7192 0.7369 3.2534 19 1 5.5040 1.9041 5.2287 20 6 6.2773 6.4078 1.3370 21 6 7.1738 6.6657 2.5778 22 6 6.9604 8.1772 2.8402 23 6 5.4660 8.4098 2.5359 24 6 5.0317 7.2848 1.5803 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8900 32 1 3.9337 0.9286 -0.8891 33 1 3.9330 0.9289 0.8909 34 1 3.7163 3.3994 0.8896 35 1 3.7170 3.3985 -0.8904 36 1 5.8026 2.7888 -2.0124 37 1 7.4932 2.0370 2.8718 38 1 6.7881 6.7154 0.4245 39 1 8.2195 6.4566 2.3522 40 1 6.8355 6.0744 3.4286 41 1 7.5829 8.7720 2.1717 42 1 7.1801 8.4186 3.8801 43 1 4.8856 8.3619 3.4573 44 1 5.3288 9.3800 2.0586 45 1 4.2405 6.6908 2.0378 46 1 4.6829 7.7087 0.6385 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326480554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -122.657151 kcal Electronic energy + Delta-G solvation = -24209.728226 eV Core-core repulsion = 20904.856635 eV Total energy + Delta-G solvation = -3304.871590 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.22361 -37.27968 -36.00549 -34.94837 -34.31512 -31.71671 -31.51482 -28.23466 -27.99510 -26.69050 -25.01832 -23.83716 -21.18460 -20.61621 -19.83929 -19.73845 -19.46439 -17.08643 -16.03955 -15.59904 -15.48757 -15.04647 -14.77674 -14.34638 -14.30852 -13.75119 -13.33813 -13.19884 -12.81960 -12.78030 -12.63538 -12.51634 -11.71599 -11.61920 -11.48628 -11.29368 -11.22261 -11.20361 -10.84526 -10.68674 -10.64829 -10.57440 -10.53563 -10.39838 -10.38081 -10.27797 -10.00726 -9.93757 -9.64438 -9.62463 -8.76924 -8.05791 -7.32042 -6.48131 -4.27876 3.04734 3.16725 3.18477 3.94622 4.06883 4.70821 4.80992 5.00800 5.09726 5.25396 5.32076 5.34441 5.38455 5.49062 5.54239 5.72168 5.75334 5.90913 5.92387 6.05893 6.09016 6.13063 6.18419 6.22499 6.26298 6.27891 6.30841 6.35052 6.42785 6.48930 6.49664 6.56227 6.60878 6.67224 6.69873 6.92579 6.97768 7.05412 7.10159 7.25433 7.37863 7.92709 8.44357 8.59668 8.85757 9.54330 9.97559 10.55196 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016070 B = 0.005759 C = 0.005443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.955257 B = 4860.465374 C = 5142.756679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.140 4.140 6 C 0.096 3.904 7 H 0.142 0.858 8 O -0.554 6.554 9 C 0.490 3.510 10 O -0.608 6.608 11 N -0.443 5.443 12 C -0.336 4.336 13 H 0.084 0.916 14 C 0.050 3.950 15 N -0.847 5.847 16 Si 0.894 3.106 17 H -0.262 1.262 18 H -0.272 1.272 19 H -0.280 1.280 20 C 0.131 3.869 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.116 4.116 24 C -0.130 4.130 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.051 0.949 36 H 0.363 0.637 37 H 0.273 0.727 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.612 0.383 -0.159 8.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.152 4.152 5 C -0.178 4.178 6 C 0.034 3.966 7 H 0.159 0.841 8 O -0.357 6.357 9 C 0.279 3.721 10 O -0.493 6.493 11 N -0.163 5.163 12 C -0.464 4.464 13 H 0.101 0.899 14 C -0.158 4.158 15 N -0.482 5.482 16 Si 0.719 3.281 17 H -0.186 1.186 18 H -0.197 1.197 19 H -0.206 1.206 20 C 0.027 3.973 21 C -0.154 4.154 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.168 4.168 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.210 0.790 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.103 0.897 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.904 0.071 -0.156 7.906 hybrid contribution -0.552 -0.193 0.440 0.731 sum -8.456 -0.121 0.284 8.462 Atomic orbital electron populations 1.21780 0.96337 1.01101 1.01662 1.21553 0.95352 0.97590 1.01881 1.21631 0.96179 0.96051 1.01817 1.21544 0.94246 0.97301 1.02114 1.22158 0.95618 0.96807 1.03258 1.22149 0.92657 0.93590 0.88182 0.84128 1.86546 1.78061 1.55508 1.15630 1.21151 0.80518 0.88581 0.81818 1.90489 1.46152 1.71655 1.41047 1.43304 1.55279 1.07348 1.10416 1.19106 1.11065 1.06470 1.09804 0.89855 1.25589 0.94549 0.99493 0.96159 1.70036 1.11308 1.23755 1.43072 0.86400 0.80823 0.80886 0.80015 1.18632 1.19696 1.20561 1.21861 0.93565 0.84023 0.97871 1.22673 0.99187 0.93873 0.99641 1.22319 0.96018 0.97725 1.00214 1.22025 0.96436 0.97875 0.99104 1.22408 0.99522 0.96539 0.98375 0.92919 0.93185 0.92847 0.92194 0.92202 0.92057 0.92325 0.91934 0.92274 0.88692 0.93061 0.79036 0.91679 0.90318 0.92633 0.89701 0.92532 0.92466 0.92355 0.92891 0.90929 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.91 37.16 0.37 -1.22 16 2 C -0.13 -1.55 5.93 -26.73 -0.16 -1.71 16 3 C -0.12 -1.67 5.22 -26.72 -0.14 -1.81 16 4 C -0.11 -1.92 5.11 -26.73 -0.14 -2.06 16 5 C -0.14 -2.68 4.76 -26.73 -0.13 -2.81 16 6 C 0.10 2.20 2.51 -27.88 -0.07 2.13 16 7 H 0.14 3.54 4.69 -51.93 -0.24 3.29 16 8 O -0.55 -12.40 12.54 -55.05 -0.69 -13.09 16 9 C 0.49 12.50 6.41 -10.99 -0.07 12.43 16 10 O -0.61 -16.96 15.69 -14.27 -0.22 -17.19 16 11 N -0.44 -10.65 2.45 -105.77 -0.26 -10.91 16 12 C -0.34 -7.91 5.12 -14.93 -0.08 -7.99 16 13 H 0.08 1.91 6.99 -52.48 -0.37 1.54 16 14 C 0.05 1.18 3.40 -17.47 -0.06 1.12 16 15 N -0.85 -21.94 11.74 55.50 0.65 -21.29 16 16 Si 0.89 18.47 29.60 -169.99 -5.03 13.44 16 17 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 18 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 20 C 0.13 2.86 3.26 -66.08 -0.22 2.64 16 21 C -0.12 -2.34 6.41 -24.55 -0.16 -2.50 16 22 C -0.12 -2.01 6.82 -25.07 -0.17 -2.18 16 23 C -0.12 -1.80 6.80 -25.62 -0.17 -1.97 16 24 C -0.13 -2.37 6.43 -25.62 -0.16 -2.53 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.03 7.82 -51.93 -0.41 0.63 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.89 6.27 -51.93 -0.33 1.57 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.36 7.06 8.77 45.56 0.40 7.46 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.08 1.85 6.99 -51.93 -0.36 1.49 16 39 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.08 1.87 7.07 -51.93 -0.37 1.50 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.37 6.67 -51.93 -0.35 1.02 16 46 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 357.15 15.07 5.38 5.38 Total: -1.00 -28.04 357.15 -9.02 -37.06 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -7.50 Total: 15.04 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: -1.35 Total: -8.45 kcal Atomic # 7 Polarization: -32.59 SS G_CDS: 0.39 Total: -32.20 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.91 Total: -30.27 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.04 -9.02 -37.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326480554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.593 kcal (2) G-P(sol) polarization free energy of solvation -28.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds