Wall clock time and date at job start Tue Mar 31 2020 06:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.53001 * 109.47032 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47216 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47251 * 180.02562 * 5 4 3 7 7 H 1.09000 * 109.47094 * 54.99342 * 6 5 4 8 8 O 1.42900 * 109.46908 * 294.99859 * 6 5 4 9 9 C 1.50699 * 109.47330 * 174.99843 * 6 5 4 10 10 O 1.21297 * 119.99562 * 109.08363 * 9 6 5 11 11 N 1.34772 * 120.00059 * 289.08573 * 9 6 5 12 12 C 1.37100 * 119.99722 * 3.75182 * 11 9 6 13 13 H 1.08005 * 119.99612 * 123.07516 * 12 11 9 14 14 C 1.38948 * 120.00299 * 303.06464 * 12 11 9 15 15 N 1.31409 * 119.99801 * 154.00486 * 14 12 11 16 16 Si 1.86799 * 120.00075 * 334.00747 * 14 12 11 17 17 H 1.48497 * 109.47220 * 89.87504 * 16 14 12 18 18 H 1.48500 * 109.47215 * 209.87352 * 16 14 12 19 19 H 1.48504 * 109.46906 * 329.87473 * 16 14 12 20 20 C 1.46500 * 119.99912 * 183.75765 * 11 9 6 21 21 C 1.54966 * 110.92483 * 123.57596 * 20 11 9 22 22 C 1.54262 * 104.15848 * 156.29445 * 21 20 11 23 23 C 1.53877 * 106.64294 * 336.44188 * 22 21 20 24 24 C 1.54266 * 106.59650 * 359.97438 * 23 22 21 25 25 H 1.09006 * 109.47125 * 299.99854 * 1 2 3 26 26 H 1.08996 * 109.47385 * 59.99623 * 1 2 3 27 27 H 1.09005 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46605 * 240.00674 * 2 1 3 29 29 H 1.09000 * 109.46949 * 120.00621 * 2 1 3 30 30 H 1.09002 * 109.46875 * 60.00840 * 3 2 1 31 31 H 1.08996 * 109.47343 * 300.00403 * 3 2 1 32 32 H 1.08997 * 109.46971 * 60.00388 * 4 3 2 33 33 H 1.09000 * 109.46949 * 300.00621 * 4 3 2 34 34 H 1.08997 * 109.47115 * 60.00132 * 5 4 3 35 35 H 1.08996 * 109.46970 * 300.00287 * 5 4 3 36 36 H 0.96693 * 114.00397 * 299.99993 * 8 6 5 37 37 H 0.97000 * 119.99908 * 180.02562 * 15 14 12 38 38 H 1.09003 * 110.67090 * 0.26668 * 20 11 9 39 39 H 1.08998 * 110.47538 * 37.63867 * 21 20 11 40 40 H 1.09001 * 110.52694 * 274.97157 * 21 20 11 41 41 H 1.09008 * 110.03177 * 217.13372 * 22 21 20 42 42 H 1.09006 * 110.03292 * 95.75681 * 22 21 20 43 43 H 1.09005 * 110.03085 * 119.26146 * 23 22 21 44 44 H 1.08995 * 110.03366 * 240.64047 * 23 22 21 45 45 H 1.08996 * 110.48757 * 142.29068 * 24 23 22 46 46 H 1.09001 * 110.48107 * 264.79434 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.6100 2.8850 -0.0013 7 1 5.9726 2.2961 -0.8438 8 8 6.0873 2.3147 1.2190 9 6 6.1123 4.3004 -0.1245 10 8 6.6390 4.8418 0.8246 11 7 5.9761 4.9648 -1.2892 12 6 5.3126 4.3814 -2.3376 13 1 4.4604 4.8763 -2.7797 14 6 5.7365 3.1538 -2.8314 15 7 4.8831 2.3592 -3.4372 16 14 7.5196 2.6331 -2.6342 17 1 7.6817 1.8972 -1.3547 18 1 7.9056 1.7511 -3.7648 19 1 8.3889 3.8371 -2.6264 20 6 6.5372 6.3102 -1.4350 21 6 7.5157 6.3748 -2.6349 22 6 7.5297 7.8657 -3.0305 23 6 6.2085 8.4690 -2.5223 24 6 5.4364 7.3235 -1.8357 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9562 0.8901 31 1 1.6766 1.9563 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9337 0.9284 0.8891 34 1 3.7171 3.3982 0.8904 35 1 3.7163 3.3993 -0.8895 36 1 5.8027 2.7885 2.0123 37 1 5.1789 1.5020 -3.7816 38 1 7.0332 6.6219 -0.5157 39 1 7.1480 5.7646 -3.4599 40 1 8.5118 6.0506 -2.3337 41 1 7.5925 7.9639 -4.1144 42 1 8.3751 8.3687 -2.5608 43 1 6.4126 9.2642 -1.8053 44 1 5.6306 8.8607 -3.3593 45 1 4.9158 7.6908 -0.9514 46 1 4.7309 6.8686 -2.5311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326480556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:08 Heat of formation + Delta-G solvation = -116.243168 kcal Electronic energy + Delta-G solvation = -24244.334884 eV Core-core repulsion = 20939.741425 eV Total energy + Delta-G solvation = -3304.593459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.53711 -37.44498 -36.05893 -35.03904 -34.39484 -31.91502 -31.63932 -28.42437 -28.14129 -26.80024 -24.86374 -24.01021 -21.19638 -20.54639 -20.03069 -19.83872 -19.34532 -17.48192 -16.21178 -15.92328 -15.40374 -15.05677 -14.92370 -14.42953 -14.07417 -13.74073 -13.63774 -13.16381 -13.00823 -12.83251 -12.66696 -12.57461 -12.09958 -11.74208 -11.50658 -11.40447 -11.30181 -11.15719 -10.86571 -10.71482 -10.65969 -10.60788 -10.46721 -10.36968 -10.19863 -10.08936 -9.91765 -9.87862 -9.80911 -9.51809 -8.91616 -8.38881 -7.52673 -6.59887 -4.31483 3.09676 3.21088 3.28853 3.59965 4.06125 4.33544 4.72799 5.08015 5.20742 5.23923 5.24365 5.24908 5.37943 5.39677 5.67598 5.77518 5.80135 5.96250 5.96940 6.00291 6.04635 6.07307 6.10253 6.14473 6.18611 6.26575 6.27740 6.37528 6.38659 6.41523 6.46700 6.53038 6.58592 6.64888 6.74600 6.83835 6.87120 7.00848 7.04883 7.20536 7.59764 7.77014 8.25374 8.39782 8.90081 9.20308 9.65904 10.47645 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017878 B = 0.005570 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.803296 B = 5025.880627 C = 5167.407336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.108 4.108 5 C -0.132 4.132 6 C 0.094 3.906 7 H 0.125 0.875 8 O -0.554 6.554 9 C 0.466 3.534 10 O -0.593 6.593 11 N -0.457 5.457 12 C -0.352 4.352 13 H 0.100 0.900 14 C 0.084 3.916 15 N -0.838 5.838 16 Si 0.827 3.173 17 H -0.261 1.261 18 H -0.281 1.281 19 H -0.252 1.252 20 C 0.126 3.874 21 C -0.129 4.129 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.125 4.125 25 H 0.050 0.950 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.109 0.891 36 H 0.370 0.630 37 H 0.276 0.724 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.481 1.563 1.974 4.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.146 4.146 5 C -0.170 4.170 6 C 0.033 3.967 7 H 0.142 0.858 8 O -0.358 6.358 9 C 0.256 3.744 10 O -0.477 6.477 11 N -0.179 5.179 12 C -0.479 4.479 13 H 0.118 0.882 14 C -0.126 4.126 15 N -0.471 5.471 16 Si 0.651 3.349 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.176 1.176 20 C 0.022 3.978 21 C -0.168 4.168 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.164 4.164 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.217 0.783 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.009 1.231 1.904 3.767 hybrid contribution 0.790 0.027 0.082 0.795 sum -2.218 1.258 1.986 3.232 Atomic orbital electron populations 1.21777 0.96492 1.00944 1.01614 1.21530 0.95210 0.97724 1.01715 1.21567 0.96124 0.95897 1.01680 1.21440 0.94396 0.96898 1.01817 1.22040 0.93700 0.97601 1.03688 1.22030 0.94822 0.91980 0.87883 0.85769 1.86516 1.77988 1.55649 1.15656 1.21632 0.80502 0.89590 0.82703 1.90524 1.48289 1.70104 1.38812 1.43662 1.49701 1.13695 1.10825 1.18712 1.12018 1.03634 1.13488 0.88219 1.25544 0.96742 0.95793 0.94519 1.69785 1.33809 1.08686 1.34774 0.87797 0.87751 0.80456 0.78860 1.18659 1.20714 1.17555 1.22066 0.93335 0.84846 0.97537 1.22687 0.98825 0.95528 0.99739 1.22055 0.97209 0.96326 1.00215 1.22041 0.96371 0.97781 0.99518 1.22559 0.98426 0.95318 1.00083 0.93109 0.92746 0.93324 0.92015 0.92566 0.92888 0.91633 0.91515 0.92791 0.93400 0.87295 0.78281 0.91303 0.89792 0.89744 0.92805 0.92285 0.92642 0.92589 0.92283 0.92634 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 37.16 0.37 -1.36 16 2 C -0.12 -1.66 5.93 -26.73 -0.16 -1.81 16 3 C -0.12 -1.75 5.21 -26.73 -0.14 -1.89 16 4 C -0.11 -1.92 5.11 -26.73 -0.14 -2.06 16 5 C -0.13 -2.63 4.67 -26.73 -0.12 -2.75 16 6 C 0.09 2.12 2.21 -27.89 -0.06 2.06 16 7 H 0.13 3.02 3.06 -51.93 -0.16 2.87 16 8 O -0.55 -11.91 12.58 -54.90 -0.69 -12.60 16 9 C 0.47 11.26 5.88 -10.99 -0.06 11.19 16 10 O -0.59 -15.30 15.68 -14.13 -0.22 -15.53 16 11 N -0.46 -10.53 1.87 -105.57 -0.20 -10.73 16 12 C -0.35 -8.34 5.59 -14.93 -0.08 -8.43 16 13 H 0.10 2.50 7.07 -52.48 -0.37 2.13 16 14 C 0.08 2.03 3.81 -17.47 -0.07 1.97 16 15 N -0.84 -20.73 13.96 55.50 0.77 -19.96 16 16 Si 0.83 19.52 25.17 -169.99 -4.28 15.24 16 17 H -0.26 -6.44 6.34 56.52 0.36 -6.08 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 19 H -0.25 -5.95 5.87 56.52 0.33 -5.62 16 20 C 0.13 2.60 3.29 -65.89 -0.22 2.39 16 21 C -0.13 -2.48 5.39 -25.03 -0.13 -2.61 16 22 C -0.12 -1.84 6.80 -25.61 -0.17 -2.01 16 23 C -0.12 -1.76 6.80 -25.61 -0.17 -1.94 16 24 C -0.13 -2.23 6.37 -25.07 -0.16 -2.39 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.93 7.82 -51.93 -0.41 0.52 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 2.38 6.19 -51.93 -0.32 2.06 16 36 H 0.37 6.81 8.72 45.56 0.40 7.21 16 37 H 0.28 6.57 8.31 -40.82 -0.34 6.23 16 38 H 0.08 1.83 7.00 -51.93 -0.36 1.47 16 39 H 0.08 1.75 7.00 -51.93 -0.36 1.39 16 40 H 0.05 1.05 7.72 -51.93 -0.40 0.65 16 41 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.08 1.51 6.63 -51.93 -0.34 1.16 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -26.54 349.06 -8.18 -34.72 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -7.50 Total: 13.25 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -1.33 Total: -9.66 kcal Atomic # 7 Polarization: -31.26 SS G_CDS: 0.58 Total: -30.69 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.91 Total: -28.13 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.28 Total: 15.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -26.54 -8.18 -34.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326480556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.526 kcal (2) G-P(sol) polarization free energy of solvation -26.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds