Wall clock time and date at job start Tue Mar 31 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.49665 * 2 1 4 4 O 1.42898 * 109.47319 * 299.93898 * 3 2 1 5 5 C 1.53043 * 109.49670 * 239.93653 * 2 1 3 6 6 C 1.53046 * 109.53936 * 301.38157 * 5 2 1 7 7 C 1.53190 * 109.31219 * 298.63421 * 6 5 2 8 8 N 1.46931 * 108.77488 * 54.63248 * 7 6 5 9 9 C 1.34772 * 120.62810 * 126.41342 * 8 7 6 10 10 O 1.21287 * 120.00374 * 180.02562 * 9 8 7 11 11 C 1.50703 * 120.00150 * 0.02562 * 9 8 7 12 12 C 1.53002 * 109.47133 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.46862 * 180.02562 * 12 11 9 14 14 C 1.53002 * 109.46862 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47133 * 179.97438 * 14 13 12 16 16 H 1.07993 * 119.99772 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99706 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00376 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99442 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47293 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46868 * 120.00145 * 19 17 15 22 22 H 1.48501 * 109.46780 * 239.99649 * 19 17 15 23 23 C 1.46927 * 118.74024 * 306.39336 * 8 7 6 24 24 H 1.08996 * 109.46946 * 59.99811 * 1 2 3 25 25 H 1.09005 * 109.46722 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.46795 * 299.99683 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46832 * 59.93782 * 3 2 1 29 29 H 0.96701 * 113.99881 * 180.02562 * 4 3 2 30 30 H 1.09005 * 109.45980 * 61.39660 * 5 2 1 31 31 H 1.08994 * 109.45914 * 181.37093 * 5 2 1 32 32 H 1.09003 * 109.49352 * 58.58542 * 6 5 2 33 33 H 1.09001 * 109.49934 * 178.64918 * 6 5 2 34 34 H 1.08994 * 109.58475 * 174.41996 * 7 6 5 35 35 H 1.09004 * 109.58553 * 294.70614 * 7 6 5 36 36 H 1.08994 * 109.46919 * 299.99889 * 11 9 8 37 37 H 1.08994 * 109.46883 * 60.00053 * 11 9 8 38 38 H 1.09002 * 109.47233 * 300.00016 * 12 11 9 39 39 H 1.08997 * 109.47529 * 59.99752 * 12 11 9 40 40 H 1.09000 * 109.46836 * 299.99108 * 13 12 11 41 41 H 1.08994 * 109.47268 * 59.99890 * 13 12 11 42 42 H 1.09002 * 109.47233 * 299.99711 * 14 13 12 43 43 H 1.08997 * 109.47529 * 59.99446 * 14 13 12 44 44 H 0.96997 * 120.00004 * 180.02562 * 18 17 15 45 45 H 1.09000 * 109.58776 * 293.81826 * 23 8 7 46 46 H 1.09002 * 109.58588 * 173.39024 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 8 1.5659 2.1157 -1.1675 5 6 2.0408 -0.7227 -1.2486 6 6 1.5037 -2.1557 -1.2663 7 6 2.0154 -2.9039 -0.0313 8 7 1.6529 -2.1383 1.1692 9 6 0.9767 -2.7226 2.1780 10 8 0.6829 -2.0798 3.1637 11 6 0.5856 -4.1748 2.0814 12 6 -0.1669 -4.5857 3.3486 13 6 -0.5634 -6.0602 3.2508 14 6 -1.3154 -6.4713 4.5183 15 6 -1.7065 -7.9235 4.4216 16 1 -1.4453 -8.4957 3.5438 17 6 -2.3978 -8.5213 5.4539 18 7 -2.7164 -7.8242 6.5227 19 14 -2.8820 -10.3216 5.3344 20 1 -2.4098 -10.8763 4.0404 21 1 -2.2619 -11.0762 6.4529 22 1 -4.3599 -10.4430 5.4147 23 6 2.0421 -0.7237 1.2493 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 3.1307 1.4418 0.0005 28 1 1.6766 1.9565 0.8894 29 1 1.8520 3.0370 -1.2338 30 1 1.6982 -0.1955 -2.1390 31 1 3.1305 -0.7437 -1.2357 32 1 0.4139 -2.1358 -1.2541 33 1 1.8482 -2.6623 -2.1678 34 1 1.5572 -3.8918 0.0132 35 1 3.0991 -3.0058 -0.0889 36 1 -0.0578 -4.3208 1.2138 37 1 1.4818 -4.7862 1.9762 38 1 0.4761 -4.4396 4.2166 39 1 -1.0631 -3.9742 3.4535 40 1 -1.2064 -6.2066 2.3829 41 1 0.3330 -6.6713 3.1462 42 1 -0.6721 -6.3249 5.3860 43 1 -2.2118 -5.8601 4.6234 44 1 -3.2024 -8.2450 7.2490 45 1 3.1282 -0.6457 1.2975 46 1 1.6014 -0.2733 2.1388 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326823403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:37 Heat of formation + Delta-G solvation = -119.894542 kcal Electronic energy + Delta-G solvation = -22749.722380 eV Core-core repulsion = 19444.970586 eV Total energy + Delta-G solvation = -3304.751795 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65573 -38.57387 -36.64896 -34.89757 -33.81459 -32.57385 -32.05733 -29.79508 -27.45581 -26.48329 -26.08560 -24.76321 -22.53208 -22.13516 -20.01655 -19.41467 -18.57962 -17.76842 -17.02115 -16.15153 -15.86920 -15.75186 -15.49181 -14.88136 -14.69687 -14.42231 -14.13252 -13.88715 -13.50477 -13.23787 -12.94772 -12.86480 -12.57914 -12.17764 -11.92509 -11.87867 -11.59783 -11.47537 -11.39820 -11.11258 -10.97703 -10.78761 -10.66017 -10.51105 -10.46241 -10.36617 -10.29459 -9.71030 -9.58670 -9.19520 -8.94723 -8.73328 -8.28958 -5.93507 -3.95874 2.71392 2.86784 3.34341 3.41445 3.45469 3.87114 4.25575 4.42300 4.50181 4.56069 4.68986 4.81161 4.84100 4.98530 5.07988 5.08949 5.22121 5.33345 5.35099 5.40724 5.42184 5.47131 5.51604 5.56156 5.61897 5.77735 5.79890 5.86346 5.95277 6.04063 6.16795 6.19341 6.30689 6.39453 6.58500 6.87079 7.04577 7.22339 7.23601 7.34873 7.76647 7.92641 8.08268 8.25196 8.50088 9.12160 9.67730 11.17900 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.040244 B = 0.002612 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.585982 B =10716.440588 C =10998.289493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.075 4.075 3 C 0.088 3.912 4 O -0.568 6.568 5 C -0.103 4.103 6 C -0.140 4.140 7 C 0.106 3.894 8 N -0.616 5.616 9 C 0.516 3.484 10 O -0.535 6.535 11 C -0.137 4.137 12 C -0.103 4.103 13 C -0.110 4.110 14 C 0.019 3.981 15 C -0.519 4.519 16 H 0.055 0.945 17 C 0.054 3.946 18 N -0.895 5.895 19 Si 0.891 3.109 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.121 3.879 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.048 0.952 29 H 0.378 0.622 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.962 18.336 -18.313 28.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.076 4.076 3 C 0.010 3.990 4 O -0.373 6.373 5 C -0.141 4.141 6 C -0.178 4.178 7 C -0.017 4.017 8 N -0.350 5.350 9 C 0.305 3.695 10 O -0.411 6.411 11 C -0.177 4.177 12 C -0.141 4.141 13 C -0.147 4.147 14 C -0.018 4.018 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.002 4.002 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.225 0.775 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.435 18.060 -17.701 28.180 hybrid contribution 0.056 -0.425 0.067 0.434 sum 12.491 17.635 -17.634 27.892 Atomic orbital electron populations 1.21772 0.93328 1.02081 1.01987 1.20930 0.97439 0.93207 0.95980 1.22094 0.96994 0.92348 0.87606 1.86464 1.77620 1.28941 1.44307 1.21483 0.99967 0.94993 0.97623 1.22012 1.02028 0.96096 0.97670 1.21770 1.00300 0.95587 0.84088 1.48080 1.57495 1.10687 1.18774 1.21101 0.76317 0.90252 0.81808 1.90691 1.53913 1.65594 1.30905 1.21817 1.02212 0.91381 1.02301 1.21461 0.99753 0.98041 0.94870 1.21644 0.99648 0.92466 1.00974 1.19103 0.95121 0.95857 0.91701 1.21322 1.35354 0.96098 1.02925 0.92710 1.25048 0.96135 0.97948 0.95503 1.69985 1.40275 1.36086 1.07150 0.86559 0.78174 0.85445 0.77948 1.19784 1.21061 1.21062 1.21462 0.99120 0.81515 0.98089 0.91947 0.92290 0.92884 0.93584 0.93348 0.77532 0.90805 0.92136 0.90883 0.90621 0.89147 0.91402 0.89213 0.89200 0.91833 0.91840 0.93510 0.93504 0.96593 0.96595 0.93113 0.91765 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.37 7.84 37.16 0.29 -1.08 16 2 C -0.07 -0.64 0.60 -154.39 -0.09 -0.73 16 3 C 0.09 0.62 5.92 37.16 0.22 0.84 16 4 O -0.57 -4.08 12.29 -35.23 -0.43 -4.51 16 5 C -0.10 -0.79 4.58 -26.69 -0.12 -0.91 16 6 C -0.14 -1.02 5.74 -26.61 -0.15 -1.18 16 7 C 0.11 0.85 6.34 -3.71 -0.02 0.83 16 8 N -0.62 -6.80 2.41 -172.76 -0.42 -7.22 16 9 C 0.52 7.51 7.70 -10.99 -0.08 7.43 16 10 O -0.54 -9.94 15.40 5.55 0.09 -9.85 16 11 C -0.14 -1.90 4.05 -27.88 -0.11 -2.01 16 12 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 13 C -0.11 -2.29 5.15 -26.73 -0.14 -2.43 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.77 13.29 55.43 0.74 -27.03 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.12 1.21 5.11 -3.71 -0.02 1.19 16 24 H 0.06 0.63 7.69 -51.93 -0.40 0.23 16 25 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.38 1.09 9.12 45.56 0.42 1.51 16 30 H 0.07 0.61 7.64 -51.93 -0.40 0.22 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.61 6.33 -51.93 -0.33 0.28 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.68 5.93 -51.93 -0.31 0.37 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.09 1.08 7.69 -51.93 -0.40 0.68 16 37 H 0.09 1.08 7.94 -51.93 -0.41 0.66 16 38 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 39 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.12 7.01 -51.93 -0.36 0.75 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -34.74 358.47 -8.09 -42.83 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.54 Total: -3.08 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -0.90 Total: -13.57 kcal Atomic # 7 Polarization: -34.57 SS G_CDS: 0.32 Total: -34.25 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.35 Total: -14.37 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.74 -8.09 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326823403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.066 kcal (2) G-P(sol) polarization free energy of solvation -34.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds