Wall clock time and date at job start Tue Mar 31 2020 06:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47120 * 2 1 4 4 C 1.53000 * 109.46802 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47081 * 185.24125 * 4 3 2 6 6 H 1.09001 * 109.46820 * 54.54790 * 5 4 3 7 7 C 1.50693 * 109.47298 * 174.54607 * 5 4 3 8 8 O 1.21292 * 120.00013 * 35.55769 * 7 5 4 9 9 N 1.34768 * 120.00295 * 215.55404 * 7 5 4 10 10 C 1.47069 * 136.05875 * 355.19144 * 9 7 5 11 11 C 1.53228 * 88.08703 * 207.20431 * 10 9 7 12 12 O 1.42901 * 114.19783 * 87.72635 * 11 10 9 13 13 C 1.50701 * 114.33045 * 220.46787 * 11 10 9 14 14 H 1.08005 * 119.99720 * 93.75456 * 13 11 10 15 15 C 1.37877 * 120.00349 * 273.76585 * 13 11 10 16 16 N 1.31516 * 119.99453 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 120.00279 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47058 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47127 * 119.99467 * 17 15 13 20 20 H 1.48500 * 109.47156 * 239.99465 * 17 15 13 21 21 C 1.47068 * 136.06152 * 175.56735 * 9 7 5 22 22 C 1.53001 * 109.46925 * 294.54958 * 5 4 3 23 23 C 1.52997 * 109.46672 * 179.27029 * 22 5 4 24 24 C 1.52999 * 109.47146 * 299.26806 * 22 5 4 25 25 H 1.09000 * 109.46939 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46561 * 299.99982 * 1 2 3 27 27 H 1.09004 * 109.47208 * 59.99866 * 1 2 3 28 28 H 1.08999 * 109.46561 * 240.00018 * 2 1 3 29 29 H 1.08996 * 109.47326 * 120.00474 * 2 1 3 30 30 H 1.08998 * 109.46870 * 60.00468 * 3 2 1 31 31 H 1.08998 * 109.47184 * 299.99680 * 3 2 1 32 32 H 1.08998 * 109.47012 * 65.24499 * 4 3 2 33 33 H 1.08999 * 109.47724 * 305.24040 * 4 3 2 34 34 H 1.08997 * 113.46666 * 321.94212 * 10 9 7 35 35 H 1.09006 * 113.46494 * 92.37391 * 10 9 7 36 36 H 0.96702 * 113.99921 * 86.30832 * 12 11 10 37 37 H 0.96997 * 119.99659 * 180.02562 * 16 15 13 38 38 H 1.09009 * 113.46756 * 267.62357 * 21 9 7 39 39 H 1.08994 * 113.46943 * 37.99774 * 21 9 7 40 40 H 1.08994 * 109.47133 * 59.27262 * 22 5 4 41 41 H 1.09001 * 109.47467 * 65.79752 * 23 22 5 42 42 H 1.09009 * 109.46802 * 185.79820 * 23 22 5 43 43 H 1.08996 * 109.47342 * 305.79452 * 23 22 5 44 44 H 1.08998 * 109.47224 * 64.69384 * 24 22 5 45 45 H 1.08999 * 109.46865 * 184.69314 * 24 22 5 46 46 H 1.09002 * 109.47212 * 304.69340 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0801 2.8789 0.1324 6 1 3.6388 3.3416 1.0153 7 6 5.5809 2.8687 0.2677 8 8 6.2387 2.0478 -0.3360 9 7 6.1923 3.7718 1.0595 10 6 5.7759 4.9366 1.8550 11 6 7.1848 5.5073 1.6621 12 8 7.3440 6.2856 0.4742 13 6 7.7604 6.1678 2.8883 14 1 8.3848 5.6017 3.5637 15 6 7.4897 7.4945 3.1482 16 7 6.7296 8.1838 2.3256 17 14 8.2026 8.3129 4.6685 18 1 9.0169 7.3281 5.4250 19 1 9.0595 9.4548 4.2601 20 1 7.0976 8.8062 5.5293 21 6 7.5705 4.0302 1.5031 22 6 3.6856 3.6764 -1.1123 23 6 4.1798 5.1175 -0.9724 24 6 4.3198 3.0375 -2.3495 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 3.9337 1.0119 -0.9324 33 1 3.9331 0.8496 0.8402 34 1 4.9985 5.5328 1.3774 35 1 5.5442 4.6935 2.8920 36 1 7.1003 7.2156 0.5777 37 1 6.5394 9.1172 2.5081 38 1 7.8217 3.5433 2.4455 39 1 8.3160 3.8563 0.7273 40 1 2.6007 3.6729 -1.2173 41 1 5.2697 5.1294 -0.9709 42 1 3.8111 5.7109 -1.8093 43 1 3.8105 5.5392 -0.0376 44 1 3.9049 2.0404 -2.4966 45 1 4.1080 3.6519 -3.2246 46 1 5.3983 2.9652 -2.2086 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331392140.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:33 Heat of formation + Delta-G solvation = -82.591943 kcal Electronic energy + Delta-G solvation = -23904.177780 eV Core-core repulsion = 20601.043548 eV Total energy + Delta-G solvation = -3303.134233 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02120 -38.12283 -36.23106 -34.60227 -33.96764 -32.18263 -30.83175 -28.99616 -26.93462 -26.65532 -25.12887 -24.97692 -22.44823 -21.60451 -20.54687 -19.29024 -17.81803 -17.29025 -16.34451 -15.78076 -15.40503 -15.24787 -14.91338 -14.24367 -13.99777 -13.76941 -13.66312 -13.48291 -12.97963 -12.73110 -12.52617 -12.45166 -12.22695 -11.96280 -11.65410 -11.55121 -11.46921 -11.34673 -11.16891 -11.09490 -10.95988 -10.82796 -10.76542 -10.57630 -10.45241 -10.28812 -10.21580 -10.10803 -9.48742 -9.01022 -8.75605 -8.33788 -7.76566 -6.40438 -4.50387 3.12668 3.22387 3.25729 3.28727 3.63340 4.17926 4.72813 4.79154 4.83620 4.92403 5.05331 5.13457 5.16968 5.38385 5.42132 5.54351 5.61975 5.68149 5.71306 5.77484 5.81817 5.89162 5.95938 5.96490 6.00949 6.04713 6.13068 6.22121 6.23457 6.28573 6.31181 6.38952 6.45753 6.48606 6.54482 6.65158 6.69478 6.77345 6.83719 7.14022 7.63116 7.81961 8.52564 8.61087 8.87294 9.21119 9.50327 10.65969 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.004098 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.607562 B = 6830.313849 C = 7021.937435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.103 4.103 5 C -0.096 4.096 6 H 0.082 0.918 7 C 0.544 3.456 8 O -0.564 6.564 9 N -0.633 5.633 10 C 0.068 3.932 11 C 0.241 3.759 12 O -0.570 6.570 13 C -0.533 4.533 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.104 3.896 22 C -0.080 4.080 23 C -0.156 4.156 24 C -0.152 4.152 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.393 0.607 37 H 0.273 0.727 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.295 -7.918 -2.988 13.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.141 4.141 5 C -0.117 4.117 6 H 0.101 0.899 7 C 0.334 3.666 8 O -0.444 6.444 9 N -0.366 5.366 10 C -0.055 4.055 11 C 0.199 3.801 12 O -0.383 6.383 13 C -0.571 4.571 14 H 0.090 0.910 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.735 3.265 18 H -0.195 1.195 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.018 4.018 22 C -0.099 4.099 23 C -0.213 4.213 24 C -0.209 4.209 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.934 -8.874 -3.706 13.826 hybrid contribution -0.002 1.082 1.180 1.601 sum -9.937 -7.792 -2.525 12.877 Atomic orbital electron populations 1.21778 0.96106 1.01307 1.01745 1.21529 0.95546 0.97151 1.02012 1.21662 0.95304 0.96554 1.02154 1.21480 0.94721 0.94655 1.03210 1.21333 0.92668 0.97759 0.99958 0.89945 1.19951 0.89301 0.78958 0.78378 1.90606 1.67137 1.39358 1.47296 1.49749 1.11968 1.29433 1.45404 1.24237 1.03326 0.84056 0.93930 1.19457 0.89078 0.86673 0.84860 1.86045 1.89769 1.27641 1.34843 1.21490 1.32005 0.96250 1.07349 0.91009 1.25066 0.93733 0.97005 0.97229 1.69272 1.37115 1.10078 1.37359 0.86280 0.78978 0.79322 0.81953 1.19455 1.20642 1.20691 1.23303 0.84121 0.96248 0.98179 1.21022 1.00011 0.95153 0.93685 1.22051 1.03237 0.94659 1.01362 1.21957 1.02576 0.99802 0.96537 0.93029 0.92808 0.92827 0.92072 0.92131 0.92050 0.91693 0.90520 0.92116 0.91185 0.90546 0.75070 0.91688 0.89971 0.91754 0.90732 0.90940 0.93009 0.92375 0.92736 0.93222 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.20 5.93 -26.73 -0.16 -1.36 16 3 C -0.12 -1.29 4.85 -26.73 -0.13 -1.42 16 4 C -0.10 -1.40 4.06 -26.73 -0.11 -1.51 16 5 C -0.10 -1.50 1.92 -91.77 -0.18 -1.68 16 6 H 0.08 1.26 7.84 -51.93 -0.41 0.85 16 7 C 0.54 10.85 5.42 -10.99 -0.06 10.79 16 8 O -0.56 -12.71 15.66 5.55 0.09 -12.63 16 9 N -0.63 -13.20 3.25 -185.41 -0.60 -13.80 16 10 C 0.07 1.42 7.24 -8.66 -0.06 1.36 16 11 C 0.24 5.69 1.57 -91.40 -0.14 5.55 16 12 O -0.57 -14.40 13.54 -35.23 -0.48 -14.88 16 13 C -0.53 -13.19 8.69 -34.44 -0.30 -13.49 16 14 H 0.07 1.74 7.81 -52.48 -0.41 1.33 16 15 C 0.07 1.76 5.39 -17.82 -0.10 1.67 16 16 N -0.90 -22.32 11.01 55.43 0.61 -21.71 16 17 Si 0.91 19.22 29.54 -169.99 -5.02 14.20 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 21 C 0.10 2.28 8.04 -8.52 -0.07 2.21 16 22 C -0.08 -1.16 2.52 -90.62 -0.23 -1.39 16 23 C -0.16 -2.54 7.83 37.16 0.29 -2.25 16 24 C -0.15 -2.26 8.43 37.16 0.31 -1.94 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.67 6.82 -51.93 -0.35 0.32 16 32 H 0.08 1.11 6.17 -51.93 -0.32 0.79 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 1.46 5.66 -51.93 -0.29 1.17 16 35 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 36 H 0.39 10.07 6.32 45.56 0.29 10.36 16 37 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 38 H 0.08 1.66 8.10 -51.92 -0.42 1.24 16 39 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.07 0.93 6.66 -51.93 -0.35 0.58 16 41 H 0.07 1.43 7.08 -51.93 -0.37 1.06 16 42 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 43 H 0.06 0.95 6.48 -51.93 -0.34 0.61 16 44 H 0.05 0.74 6.58 -51.93 -0.34 0.40 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 1.25 6.13 -51.93 -0.32 0.93 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -26.75 355.63 -8.01 -34.77 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -7.41 Total: 13.05 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.56 Total: -4.37 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: 0.01 Total: -35.51 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.39 Total: -27.50 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.75 -8.01 -34.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331392140.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.827 kcal (2) G-P(sol) polarization free energy of solvation -26.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds