Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 120.00093 * 2 1 4 4 H 1.48498 * 109.47233 * 240.00430 * 3 2 1 5 5 H 1.48504 * 109.46762 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47302 * 119.99803 * 3 2 1 7 7 C 1.37876 * 120.00306 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00408 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99702 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47130 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47121 * 179.97438 * 10 9 7 12 12 N 1.46893 * 109.46941 * 179.97438 * 11 10 9 13 13 C 1.46854 * 111.00011 * 169.99932 * 12 11 10 14 14 C 1.53046 * 109.50834 * 174.13366 * 13 12 11 15 15 C 1.53077 * 109.25760 * 59.12839 * 14 13 12 16 16 C 1.53050 * 109.25253 * 302.35870 * 15 14 13 17 17 C 1.46843 * 111.00139 * 45.74230 * 12 11 10 18 18 C 1.53023 * 109.48688 * 182.41107 * 15 14 13 19 19 C 1.53187 * 109.15800 * 297.46495 * 18 15 14 20 20 H 1.09002 * 109.61927 * 63.01845 * 19 18 15 21 21 O 1.42894 * 109.54740 * 183.23967 * 19 18 15 22 22 C 1.53182 * 109.03627 * 303.10782 * 19 18 15 23 23 C 1.53096 * 109.18851 * 56.97606 * 22 19 18 24 24 O 1.42855 * 109.49947 * 62.31998 * 15 14 13 25 25 H 0.97001 * 119.99670 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47787 * 60.00083 * 9 7 2 27 27 H 1.09000 * 109.47010 * 299.99778 * 9 7 2 28 28 H 1.08995 * 109.46869 * 59.99794 * 10 9 7 29 29 H 1.09000 * 109.46975 * 299.99777 * 10 9 7 30 30 H 1.09000 * 109.47070 * 59.99785 * 11 10 9 31 31 H 1.09000 * 109.47061 * 299.99782 * 11 10 9 32 32 H 1.08995 * 109.46430 * 54.12065 * 13 12 11 33 33 H 1.08997 * 109.45777 * 294.13906 * 13 12 11 34 34 H 1.09008 * 109.50744 * 299.19985 * 14 13 12 35 35 H 1.09003 * 109.51179 * 179.06471 * 14 13 12 36 36 H 1.09001 * 109.50773 * 177.55225 * 16 15 14 37 37 H 1.09000 * 109.51099 * 297.68770 * 16 15 14 38 38 H 1.09000 * 109.45780 * 305.86754 * 17 12 11 39 39 H 1.08993 * 109.46729 * 65.83543 * 17 12 11 40 40 H 1.09003 * 109.52294 * 57.36731 * 18 15 14 41 41 H 1.09002 * 109.52417 * 177.55818 * 18 15 14 42 42 H 0.96699 * 114.00528 * 179.55075 * 21 19 18 43 43 H 1.09008 * 109.51506 * 297.06807 * 22 19 18 44 44 H 1.08994 * 109.56436 * 176.92104 * 22 19 18 45 45 H 1.09002 * 109.48511 * 182.39525 * 23 22 19 46 46 H 1.09002 * 109.47939 * 62.35313 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6621 -0.0015 11 6 1.4804 -4.9871 -0.0020 12 7 2.4350 -6.1036 -0.0024 13 6 1.7507 -7.3811 0.2352 14 6 2.7487 -8.5314 0.0832 15 6 3.8895 -8.3461 1.0869 16 6 4.5544 -6.9880 0.8501 17 6 3.5041 -5.8822 0.9796 18 6 4.9212 -9.4605 0.8987 19 6 4.2616 -10.8112 1.1940 20 1 3.4609 -10.9920 0.4768 21 8 5.2364 -11.8512 1.0942 22 6 3.6832 -10.7854 2.6121 23 6 2.6983 -9.6195 2.7327 24 8 3.3683 -8.3975 2.4160 25 1 -0.4850 0.8401 -0.0004 26 1 0.6248 -2.5563 -0.8919 27 1 0.6241 -2.5574 0.8880 28 1 2.8713 -3.6047 0.8890 29 1 2.8727 -3.6039 -0.8909 30 1 0.8541 -5.0447 -0.8922 31 1 0.8534 -5.0450 0.8877 32 1 0.9447 -7.5015 -0.4885 33 1 1.3376 -7.3896 1.2438 34 1 3.1518 -8.5322 -0.9297 35 1 2.2447 -9.4785 0.2758 36 1 5.3392 -6.8329 1.5906 37 1 4.9869 -6.9639 -0.1501 38 1 3.9710 -4.9145 0.7961 39 1 3.0829 -5.8973 1.9848 40 1 5.2855 -9.4498 -0.1286 41 1 5.7548 -9.3047 1.5835 42 1 4.8887 -12.7350 1.2760 43 1 4.4909 -10.6558 3.3326 44 1 3.1641 -11.7228 2.8117 45 1 2.3158 -9.5707 3.7523 46 1 1.8701 -9.7701 2.0403 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336332427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = -110.692799 kcal Electronic energy + Delta-G solvation = -23408.847287 eV Core-core repulsion = 20104.494510 eV Total energy + Delta-G solvation = -3304.352777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83748 -38.06421 -36.75828 -34.31220 -33.01379 -32.25647 -31.43089 -30.50221 -28.66976 -26.03783 -24.30270 -23.91825 -23.01079 -22.03849 -20.73155 -19.45932 -19.34380 -17.78995 -16.50309 -16.28922 -16.10023 -15.36588 -15.22597 -14.74168 -14.60890 -14.45870 -14.29766 -13.97923 -13.63205 -13.44560 -12.91118 -12.53004 -12.34827 -12.22258 -11.98114 -11.95363 -11.58287 -11.46135 -11.21321 -11.10734 -10.98622 -10.79455 -10.75250 -10.54320 -10.46612 -10.25328 -9.93239 -9.63137 -9.54341 -9.28278 -9.01030 -8.30474 -7.93957 -5.96100 -3.98133 3.36232 3.40155 3.42980 3.52669 3.75765 4.19987 4.34436 4.41945 4.50093 4.55515 4.67192 4.72875 4.89152 5.03467 5.05161 5.24278 5.31871 5.39606 5.43439 5.44593 5.53614 5.54613 5.57558 5.70252 5.77091 5.79150 5.85912 5.89091 5.94631 6.04291 6.08727 6.24048 6.32159 6.36163 6.76065 6.83517 7.09136 7.14775 7.23979 7.46631 7.47789 7.71883 7.87556 8.04409 8.47662 9.08876 9.65613 11.15369 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.041892 B = 0.002931 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.219868 B = 9550.985932 C = 9731.587350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.112 4.112 11 C 0.057 3.943 12 N -0.539 5.539 13 C 0.059 3.941 14 C -0.142 4.142 15 C 0.122 3.878 16 C -0.099 4.099 17 C 0.051 3.949 18 C -0.134 4.134 19 C 0.102 3.898 20 H 0.059 0.941 21 O -0.566 6.566 22 C -0.188 4.188 23 C 0.060 3.940 24 O -0.365 6.365 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.039 0.961 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.376 0.624 43 H 0.079 0.921 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -24.773 3.391 25.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.070 4.070 12 N -0.264 5.264 13 C -0.069 4.069 14 C -0.180 4.180 15 C 0.082 3.918 16 C -0.137 4.137 17 C -0.076 4.076 18 C -0.172 4.172 19 C 0.044 3.956 20 H 0.076 0.924 21 O -0.372 6.372 22 C -0.226 4.226 23 C -0.017 4.017 24 O -0.284 6.284 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.032 0.968 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.223 0.777 43 H 0.098 0.902 44 H 0.091 0.909 45 H 0.113 0.887 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.930 -24.008 2.911 25.157 hybrid contribution -0.467 0.147 0.836 0.969 sum 6.463 -23.860 3.747 25.003 Atomic orbital electron populations 1.69959 1.06060 1.26631 1.50998 1.25026 0.94842 0.99227 0.95406 0.86663 0.79580 0.83168 0.78618 1.20223 1.21333 1.20269 1.21221 0.92995 0.91086 1.50395 0.92749 1.19063 0.94014 0.91342 0.97090 1.21794 0.99340 0.93096 1.00731 1.22257 0.94029 0.90559 1.00129 1.62062 1.12848 1.01991 1.49463 1.21946 0.95722 0.89536 0.99713 1.22241 0.97132 0.98204 1.00394 1.21495 0.92275 0.95357 0.82630 1.21611 0.97861 0.91612 1.02591 1.22137 0.92656 0.98837 0.94015 1.22154 0.99276 0.92208 1.03542 1.21891 0.90465 0.88288 0.94981 0.92353 1.86537 1.38819 1.18270 1.93554 1.22955 1.00956 0.99884 0.98803 1.22507 0.93831 0.83945 1.01464 1.88025 1.74095 1.36065 1.30212 0.93005 0.96601 0.96840 0.93105 0.92573 0.91191 0.95406 0.91069 0.94679 0.89961 0.91518 0.90852 0.89707 0.89269 0.94235 0.90091 0.90323 0.77669 0.90241 0.90885 0.88728 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.11 -2.36 4.40 -26.73 -0.12 -2.48 16 11 C 0.06 1.03 5.27 -3.83 -0.02 1.01 16 12 N -0.54 -8.32 4.80 -234.66 -1.13 -9.45 16 13 C 0.06 0.77 5.29 -3.83 -0.02 0.75 16 14 C -0.14 -1.51 4.20 -26.67 -0.11 -1.62 16 15 C 0.12 1.34 0.69 -90.54 -0.06 1.27 16 16 C -0.10 -1.20 5.11 -26.67 -0.14 -1.33 16 17 C 0.05 0.76 4.72 -3.82 -0.02 0.74 16 18 C -0.13 -1.32 4.58 -26.62 -0.12 -1.44 16 19 C 0.10 0.86 3.25 -26.54 -0.09 0.77 16 20 H 0.06 0.45 6.69 -51.93 -0.35 0.10 16 21 O -0.57 -4.87 13.33 -35.23 -0.47 -5.34 16 22 C -0.19 -1.42 5.76 -26.59 -0.15 -1.57 16 23 C 0.06 0.53 6.52 37.21 0.24 0.77 16 24 O -0.36 -4.36 9.09 -35.23 -0.32 -4.68 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 1.05 6.21 -51.93 -0.32 0.73 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.03 0.48 7.76 -51.93 -0.40 0.08 16 34 H 0.08 0.88 8.14 -51.92 -0.42 0.45 16 35 H 0.07 0.60 4.99 -51.93 -0.26 0.34 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.41 5.81 -51.93 -0.30 1.11 16 39 H 0.04 0.63 7.76 -51.93 -0.40 0.23 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.38 1.58 9.08 45.56 0.41 2.00 16 43 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.45 6.30 -51.93 -0.33 0.12 16 LS Contribution 345.26 15.07 5.20 5.20 Total: -1.00 -32.12 345.26 -9.56 -41.68 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -7.41 Total: -1.31 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -1.15 Total: -16.42 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: -0.39 Total: -36.10 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.79 Total: -10.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.12 -9.56 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336332427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.014 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds