Wall clock time and date at job start Tue Mar 31 2020 05:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46566 * 120.00030 * 2 1 3 5 5 H 1.07997 * 119.99748 * 122.50324 * 4 2 1 6 6 C 1.37871 * 120.00192 * 302.22823 * 4 2 1 7 7 N 1.31517 * 120.00150 * 353.49029 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 173.49569 * 6 4 2 9 9 H 1.48501 * 109.47425 * 94.98534 * 8 6 4 10 10 H 1.48506 * 109.46958 * 214.98758 * 8 6 4 11 11 H 1.48500 * 109.47040 * 334.98144 * 8 6 4 12 12 C 1.52996 * 109.47093 * 239.99780 * 2 1 3 13 13 N 1.46501 * 109.47120 * 60.00456 * 12 2 1 14 14 C 1.34781 * 120.00113 * 179.97438 * 13 12 2 15 15 O 1.21279 * 119.99480 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99932 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.53749 * 60.00586 * 16 14 13 18 18 C 1.53173 * 109.54469 * 299.82445 * 16 14 13 19 19 C 1.53101 * 109.15622 * 183.24011 * 18 16 14 20 20 O 1.42905 * 109.48819 * 57.47667 * 19 18 16 21 21 C 1.42906 * 114.09408 * 298.88843 * 20 19 18 22 22 C 1.52989 * 109.48333 * 301.17175 * 21 20 19 23 23 C 1.53009 * 109.47714 * 181.13549 * 21 20 19 24 24 C 1.53089 * 109.41659 * 61.15888 * 21 20 19 25 25 H 1.08996 * 109.46989 * 300.00417 * 1 2 3 26 26 H 1.09004 * 109.46815 * 60.00065 * 1 2 3 27 27 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 174.12099 * 3 2 1 29 29 H 1.08998 * 109.47427 * 294.12348 * 3 2 1 30 30 H 1.09006 * 109.47163 * 54.12680 * 3 2 1 31 31 H 0.97001 * 120.00578 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46808 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47484 * 300.00126 * 12 2 1 34 34 H 0.96995 * 119.99786 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.52336 * 303.05723 * 18 16 14 36 36 H 1.09005 * 109.52248 * 63.24993 * 18 16 14 37 37 H 1.08998 * 109.41000 * 297.49646 * 19 18 16 38 38 H 1.09002 * 109.49553 * 177.51109 * 19 18 16 39 39 H 1.09001 * 109.47448 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.47314 * 299.94836 * 22 21 20 41 41 H 1.09005 * 109.47120 * 59.94692 * 22 21 20 42 42 H 1.08994 * 109.47069 * 300.05985 * 23 21 20 43 43 H 1.08998 * 109.46704 * 60.06073 * 23 21 20 44 44 H 1.09004 * 109.46725 * 180.02562 * 23 21 20 45 45 H 1.08996 * 109.52855 * 182.48150 * 24 21 20 46 46 H 1.09000 * 109.52582 * 62.29045 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6860 -1.5644 1.1320 6 6 1.6616 -0.2668 2.4822 7 7 0.9768 0.8488 2.6084 8 14 2.1324 -1.2503 3.9990 9 1 3.3923 -0.7088 4.5688 10 1 1.0488 -1.1505 5.0096 11 1 2.3301 -2.6736 3.6243 12 6 2.0400 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8778 -0.4908 -3.6695 15 8 2.5750 -1.4770 -3.7807 16 6 1.3751 0.2193 -4.9000 17 1 1.7372 1.2474 -4.9010 18 6 -0.1567 0.2153 -4.9040 19 6 -0.6573 0.8666 -6.1960 20 8 -0.1248 0.1647 -7.3211 21 6 1.3023 0.1772 -7.3944 22 6 1.7972 1.6233 -7.4613 23 6 1.7554 -0.5759 -8.6469 24 6 1.8817 -0.5037 -6.1518 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1250 1.4442 0.1053 29 1 1.7652 1.9250 -0.9379 30 1 1.5934 1.9858 0.8328 31 1 0.7163 1.1612 3.4890 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2492 34 1 0.9939 0.7578 -2.3564 35 1 -0.5184 -0.8115 -4.8513 36 1 -0.5246 0.7768 -4.0452 37 1 -0.3304 1.9059 -6.2280 38 1 -1.7462 0.8271 -6.2250 39 1 2.8857 1.6327 -7.5168 40 1 1.3845 2.1080 -8.3462 41 1 1.4738 2.1597 -6.5692 42 1 1.4023 -1.6059 -8.5991 43 1 1.3428 -0.0910 -9.5316 44 1 2.8440 -0.5667 -8.7024 45 1 2.9702 -0.4562 -6.1844 46 1 1.5624 -1.5455 -6.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353714213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:13 Heat of formation + Delta-G solvation = -108.779468 kcal Electronic energy + Delta-G solvation = -23656.871207 eV Core-core repulsion = 20352.601399 eV Total energy + Delta-G solvation = -3304.269809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.53401 -38.81568 -36.38799 -33.81368 -33.76692 -33.06956 -30.79429 -28.46408 -27.51749 -26.04903 -25.76076 -25.25646 -23.85385 -22.57610 -20.03670 -19.26050 -18.79484 -17.14744 -16.29093 -16.04542 -15.74572 -15.14622 -15.04322 -14.67968 -14.42504 -14.35892 -13.65887 -13.28267 -13.09262 -12.93158 -12.72975 -12.43254 -12.29052 -12.21628 -12.01571 -11.87144 -11.48220 -11.37139 -11.22502 -11.18380 -10.89289 -10.81398 -10.69343 -10.41039 -10.27979 -10.22582 -9.78501 -9.65503 -9.46574 -9.12801 -8.81613 -8.45687 -8.31130 -6.04829 -4.13277 3.02862 3.26544 3.34262 3.38825 3.57736 3.73461 4.38793 4.49696 4.66123 4.69611 4.76731 4.85422 5.03803 5.21721 5.22460 5.27228 5.35108 5.45914 5.49467 5.54060 5.58039 5.68640 5.79524 5.86805 5.92640 6.05216 6.08532 6.22400 6.26327 6.31239 6.48681 6.76395 6.78717 6.90548 6.98729 7.02407 7.14104 7.32984 7.52766 7.67924 7.96887 8.03899 8.13214 8.36116 8.69937 8.87137 9.52159 10.97230 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.003467 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.057459 B = 8074.858173 C = 8338.503991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.508 4.508 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.509 3.491 15 O -0.551 6.551 16 C -0.111 4.111 17 H 0.095 0.905 18 C -0.147 4.147 19 C 0.061 3.939 20 O -0.374 6.374 21 C 0.110 3.890 22 C -0.181 4.181 23 C -0.136 4.136 24 C -0.119 4.119 25 H 0.082 0.918 26 H 0.007 0.993 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.004 0.996 30 H 0.084 0.916 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.235 3.555 -17.929 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.294 3.706 15 O -0.430 6.430 16 C -0.132 4.132 17 H 0.113 0.887 18 C -0.185 4.185 19 C -0.015 4.015 20 O -0.294 6.294 21 C 0.071 3.929 22 C -0.238 4.238 23 C -0.194 4.194 24 C -0.157 4.157 25 H 0.101 0.899 26 H 0.026 0.974 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.023 0.977 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.097 0.903 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.924 2.862 -17.965 18.293 hybrid contribution 0.148 0.072 1.313 1.323 sum -1.776 2.934 -16.653 17.002 Atomic orbital electron populations 1.21796 0.97809 0.99150 0.99926 1.18355 0.92713 0.92788 0.90642 1.21849 0.99391 0.98463 0.98898 1.20981 1.29808 1.13938 0.89923 0.92441 1.24871 0.94979 0.94749 0.98805 1.69837 1.38945 1.20339 1.23208 0.86582 0.78038 0.80712 0.82707 1.20814 1.21181 1.19825 1.21698 0.98106 0.95797 0.83513 1.46331 1.52484 1.31741 1.06055 1.20441 0.80625 0.84784 0.84769 1.90659 1.38700 1.26659 1.86982 1.21415 0.96729 1.00984 0.94106 0.88688 1.22195 0.93859 1.03309 0.99187 1.22565 0.98839 0.95137 0.84994 1.87960 1.19958 1.75620 1.45841 1.21533 0.81134 0.94782 0.95486 1.22473 1.02115 0.96651 1.02561 1.21738 1.01125 1.00676 0.95821 1.21979 1.01387 1.00495 0.91853 0.89927 0.97437 0.95386 0.95275 0.97739 0.89721 0.93037 0.92810 0.92764 0.76801 0.90386 0.90137 0.92724 0.88616 0.91349 0.91858 0.91818 0.91707 0.91919 0.91050 0.90326 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.05 37.16 0.30 -2.56 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.87 8.08 37.15 0.30 -2.57 16 4 C -0.51 -13.29 8.00 -34.44 -0.28 -13.57 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.12 -17.82 -0.09 1.68 16 7 N -0.88 -23.46 9.47 55.43 0.52 -22.93 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 12 C 0.13 2.79 4.50 -4.04 -0.02 2.77 16 13 N -0.72 -12.55 4.81 -60.29 -0.29 -12.84 16 14 C 0.51 8.69 7.16 -10.98 -0.08 8.61 16 15 O -0.55 -11.50 15.97 5.56 0.09 -11.41 16 16 C -0.11 -1.40 2.30 -91.59 -0.21 -1.61 16 17 H 0.10 1.05 6.62 -51.93 -0.34 0.71 16 18 C -0.15 -1.64 5.30 -26.59 -0.14 -1.78 16 19 C 0.06 0.60 6.51 37.21 0.24 0.84 16 20 O -0.37 -4.34 10.24 -35.23 -0.36 -4.70 16 21 C 0.11 1.14 1.11 -90.57 -0.10 1.04 16 22 C -0.18 -1.58 7.93 37.15 0.29 -1.29 16 23 C -0.14 -1.22 8.85 37.16 0.33 -0.90 16 24 C -0.12 -1.47 3.52 -26.59 -0.09 -1.56 16 25 H 0.08 2.03 6.15 -51.93 -0.32 1.71 16 26 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.00 0.07 6.72 -51.93 -0.35 -0.28 16 30 H 0.08 2.08 6.20 -51.93 -0.32 1.76 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.40 6.24 5.66 -40.82 -0.23 6.01 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.82 7.68 -51.93 -0.40 0.42 16 37 H 0.05 0.47 6.34 -51.93 -0.33 0.14 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 4.98 -51.93 -0.26 0.29 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.08 1.12 8.03 -51.93 -0.42 0.70 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -28.84 347.30 -7.39 -36.22 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.94 Total: 4.47 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: 0.38 Total: -9.70 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.23 Total: -35.77 kcal Atomic # 8 Polarization: -15.84 SS G_CDS: -0.27 Total: -16.12 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.84 -7.39 -36.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353714213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.556 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds