Wall clock time and date at job start Tue Mar 31 2020 05:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47159 * 2 1 4 4 C 1.50703 * 109.46566 * 120.00030 * 2 1 3 5 5 H 1.07997 * 119.99748 * 122.50324 * 4 2 1 6 6 C 1.37871 * 120.00192 * 302.22823 * 4 2 1 7 7 N 1.31517 * 120.00150 * 353.49029 * 6 4 2 8 8 Si 1.86800 * 120.00100 * 173.49569 * 6 4 2 9 9 H 1.48501 * 109.47425 * 94.98534 * 8 6 4 10 10 H 1.48506 * 109.46958 * 214.98758 * 8 6 4 11 11 H 1.48500 * 109.47040 * 334.98144 * 8 6 4 12 12 C 1.52996 * 109.47093 * 239.99780 * 2 1 3 13 13 N 1.46501 * 109.47120 * 60.00456 * 12 2 1 14 14 C 1.34781 * 120.00113 * 179.97438 * 13 12 2 15 15 O 1.21279 * 119.99480 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99932 * 179.97438 * 14 13 12 17 17 H 1.08999 * 109.53749 * 60.00586 * 16 14 13 18 18 C 1.53173 * 109.54469 * 299.82445 * 16 14 13 19 19 C 1.53101 * 109.15622 * 183.24011 * 18 16 14 20 20 O 1.42905 * 109.48819 * 57.47667 * 19 18 16 21 21 C 1.42906 * 114.09408 * 298.88843 * 20 19 18 22 22 C 1.52989 * 109.48333 * 301.17175 * 21 20 19 23 23 C 1.53009 * 109.47714 * 181.13549 * 21 20 19 24 24 C 1.53089 * 109.41659 * 61.15888 * 21 20 19 25 25 H 1.08996 * 109.46989 * 300.00417 * 1 2 3 26 26 H 1.09004 * 109.46815 * 60.00065 * 1 2 3 27 27 H 1.08996 * 109.47474 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46973 * 174.12099 * 3 2 1 29 29 H 1.08998 * 109.47427 * 294.12348 * 3 2 1 30 30 H 1.09006 * 109.47163 * 54.12680 * 3 2 1 31 31 H 0.97001 * 120.00578 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.46808 * 180.02562 * 12 2 1 33 33 H 1.09002 * 109.47484 * 300.00126 * 12 2 1 34 34 H 0.96995 * 119.99786 * 359.97438 * 13 12 2 35 35 H 1.08996 * 109.52336 * 303.05723 * 18 16 14 36 36 H 1.09005 * 109.52248 * 63.24993 * 18 16 14 37 37 H 1.08998 * 109.41000 * 297.49646 * 19 18 16 38 38 H 1.09002 * 109.49553 * 177.51109 * 19 18 16 39 39 H 1.09001 * 109.47448 * 179.97438 * 22 21 20 40 40 H 1.09003 * 109.47314 * 299.94836 * 22 21 20 41 41 H 1.09005 * 109.47120 * 59.94692 * 22 21 20 42 42 H 1.08994 * 109.47069 * 300.05985 * 23 21 20 43 43 H 1.08998 * 109.46704 * 60.06073 * 23 21 20 44 44 H 1.09004 * 109.46725 * 180.02562 * 23 21 20 45 45 H 1.08996 * 109.52855 * 182.48150 * 24 21 20 46 46 H 1.09000 * 109.52582 * 62.29045 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6860 -1.5644 1.1320 6 6 1.6616 -0.2668 2.4822 7 7 0.9768 0.8488 2.6084 8 14 2.1324 -1.2503 3.9990 9 1 3.3923 -0.7088 4.5688 10 1 1.0488 -1.1505 5.0096 11 1 2.3301 -2.6736 3.6243 12 6 2.0400 -0.7213 -1.2492 13 7 1.5518 -0.0306 -2.4454 14 6 1.8778 -0.4908 -3.6695 15 8 2.5750 -1.4770 -3.7807 16 6 1.3751 0.2193 -4.9000 17 1 1.7372 1.2474 -4.9010 18 6 -0.1567 0.2153 -4.9040 19 6 -0.6573 0.8666 -6.1960 20 8 -0.1248 0.1647 -7.3211 21 6 1.3023 0.1772 -7.3944 22 6 1.7972 1.6233 -7.4613 23 6 1.7554 -0.5759 -8.6469 24 6 1.8817 -0.5037 -6.1518 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1250 1.4442 0.1053 29 1 1.7652 1.9250 -0.9379 30 1 1.5934 1.9858 0.8328 31 1 0.7163 1.1612 3.4890 32 1 3.1300 -0.7217 -1.2489 33 1 1.6767 -1.7490 -1.2492 34 1 0.9939 0.7578 -2.3564 35 1 -0.5184 -0.8115 -4.8513 36 1 -0.5246 0.7768 -4.0452 37 1 -0.3304 1.9059 -6.2280 38 1 -1.7462 0.8271 -6.2250 39 1 2.8857 1.6327 -7.5168 40 1 1.3845 2.1080 -8.3462 41 1 1.4738 2.1597 -6.5692 42 1 1.4023 -1.6059 -8.5991 43 1 1.3428 -0.0910 -9.5316 44 1 2.8440 -0.5667 -8.7024 45 1 2.9702 -0.4562 -6.1844 46 1 1.5624 -1.5455 -6.1249 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353714213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:12 Heat of formation + Delta-G solvation = -125.875923 kcal Electronic energy + Delta-G solvation = -23657.612565 eV Core-core repulsion = 20352.601399 eV Total energy + Delta-G solvation = -3305.011167 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.59972 -40.07422 -38.12714 -35.14923 -34.69612 -34.37907 -32.60179 -29.31236 -28.21179 -27.63938 -27.57768 -27.09460 -25.07385 -23.53603 -21.35681 -20.61993 -20.13599 -18.48786 -17.72273 -17.19744 -16.94711 -16.61575 -16.53699 -15.98550 -15.57884 -15.44369 -14.88822 -14.76359 -14.54834 -14.17083 -13.99662 -13.88499 -13.36636 -13.21437 -13.08163 -12.94468 -12.83627 -12.70781 -12.62074 -12.59598 -12.31344 -12.25082 -12.14684 -12.05705 -11.73527 -11.49670 -11.26941 -11.17700 -10.84542 -10.72082 -10.39341 -10.30038 -9.94731 -8.04722 -6.18719 1.40485 1.44246 1.52958 1.65754 2.28505 2.48307 2.86567 3.19316 3.57320 3.67386 3.76873 3.87867 4.07808 4.21658 4.31998 4.38414 4.46311 4.49621 4.50868 4.66599 4.71162 4.72615 4.82737 4.86222 4.91709 4.97990 5.02360 5.04029 5.08773 5.09465 5.13660 5.15548 5.17747 5.34301 5.35285 5.43181 5.58563 5.65427 5.67350 6.13086 6.19896 6.37086 6.41706 6.65927 6.84856 7.30913 7.48516 8.94812 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.037928 B = 0.003467 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.057459 B = 8074.858173 C = 8338.503991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.533 4.533 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.280 1.280 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.708 5.708 14 C 0.507 3.493 15 O -0.593 6.593 16 C -0.101 4.101 17 H 0.122 0.878 18 C -0.145 4.145 19 C 0.061 3.939 20 O -0.391 6.391 21 C 0.110 3.890 22 C -0.178 4.178 23 C -0.137 4.137 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.040 0.960 27 H 0.017 0.983 28 H 0.015 0.985 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.260 0.740 32 H 0.036 0.964 33 H 0.035 0.965 34 H 0.409 0.591 35 H 0.058 0.942 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.111 0.889 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.874 5.145 -19.212 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.571 4.571 5 H 0.060 0.940 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.206 1.206 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.359 5.359 14 C 0.294 3.706 15 O -0.474 6.474 16 C -0.122 4.122 17 H 0.139 0.861 18 C -0.183 4.183 19 C -0.016 4.016 20 O -0.311 6.311 21 C 0.071 3.929 22 C -0.235 4.235 23 C -0.195 4.195 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.246 0.754 35 H 0.077 0.923 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.101 0.899 45 H 0.093 0.907 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.582 4.476 -19.258 19.939 hybrid contribution 0.361 -0.459 1.697 1.794 sum -2.221 4.017 -17.561 18.151 Atomic orbital electron populations 1.21637 0.96973 0.98645 1.00410 1.18355 0.93308 0.93069 0.90196 1.21679 0.98243 0.97831 0.99769 1.21270 1.30089 1.14027 0.91725 0.93958 1.25422 0.95148 0.95544 1.00819 1.69928 1.39153 1.20822 1.23624 0.85789 0.77838 0.79328 0.80115 1.20577 1.20644 1.20177 1.21243 0.96896 0.95020 0.84515 1.46145 1.52627 1.31898 1.05254 1.21270 0.79495 0.84219 0.85593 1.90643 1.40535 1.28663 1.87560 1.21438 0.97876 1.01496 0.91433 0.86074 1.22218 0.92368 1.02759 1.00963 1.22711 0.99737 0.95692 0.83419 1.87954 1.20480 1.76158 1.46482 1.21593 0.80713 0.95923 0.94660 1.22457 1.02675 0.95139 1.03279 1.21773 1.01945 1.00028 0.95712 1.21967 1.01232 0.99360 0.93019 0.92159 0.94098 0.96346 0.96573 0.94363 0.91838 0.92996 0.94576 0.94668 0.75364 0.92273 0.88653 0.90720 0.87089 0.90582 0.90860 0.91342 0.92771 0.90870 0.89905 0.90749 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.05 71.98 0.58 -4.59 16 2 C 0.05 2.35 0.50 -52.93 -0.03 2.33 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 4 C -0.53 -28.25 8.00 25.60 0.20 -28.05 16 5 H 0.04 2.31 7.75 -2.91 -0.02 2.29 16 6 C 0.03 1.62 5.12 84.65 0.43 2.05 16 7 N -0.90 -47.45 9.47 21.45 0.20 -47.25 16 8 Si 0.94 42.57 29.54 68.60 2.03 44.60 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.15 6.29 4.50 86.38 0.39 6.67 16 13 N -0.71 -23.92 4.81 -463.06 -2.23 -26.15 16 14 C 0.51 16.92 7.16 87.66 0.63 17.54 16 15 O -0.59 -25.07 15.97 -3.03 -0.05 -25.12 16 16 C -0.10 -2.37 2.30 -11.42 -0.03 -2.39 16 17 H 0.12 2.25 6.62 -2.39 -0.02 2.24 16 18 C -0.14 -2.89 5.30 30.69 0.16 -2.73 16 19 C 0.06 0.99 6.51 72.02 0.47 1.46 16 20 O -0.39 -8.18 10.24 -148.98 -1.53 -9.71 16 21 C 0.11 2.06 1.11 -10.76 -0.01 2.05 16 22 C -0.18 -2.54 7.93 71.98 0.57 -1.97 16 23 C -0.14 -2.25 8.85 71.99 0.64 -1.62 16 24 C -0.12 -2.79 3.52 30.68 0.11 -2.68 16 25 H 0.06 2.91 6.15 -2.39 -0.01 2.90 16 26 H 0.04 1.45 6.86 -2.38 -0.02 1.44 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.04 1.37 6.72 -2.39 -0.02 1.35 16 30 H 0.06 3.07 6.20 -2.38 -0.01 3.06 16 31 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.41 11.73 5.66 -92.71 -0.52 11.20 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.62 7.68 -2.38 -0.02 1.60 16 37 H 0.07 0.95 6.34 -2.39 -0.02 0.94 16 38 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 0.92 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.90 4.98 -2.38 -0.01 0.89 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.54 8.03 -2.39 -0.02 1.53 16 Total: -1.00 -62.72 347.30 3.55 -59.17 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.43 Total: 20.92 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 4.70 Total: -16.46 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -2.03 Total: -73.40 kcal Atomic # 8 Polarization: -33.25 SS G_CDS: -1.57 Total: -34.82 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -62.72 3.55 -59.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353714213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.710 kcal (2) G-P(sol) polarization free energy of solvation -62.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds