Wall clock time and date at job start Tue Mar 31 2020 06:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47144 * 2 1 4 4 C 1.52998 * 109.46764 * 119.99730 * 2 1 3 5 5 C 1.53001 * 109.47598 * 299.99645 * 4 2 1 6 6 N 1.46895 * 109.47064 * 179.97438 * 5 4 2 7 7 C 1.46905 * 110.99705 * 189.99971 * 6 5 4 8 8 C 1.50700 * 109.46920 * 71.31042 * 7 6 5 9 9 H 1.07997 * 119.99783 * 355.26733 * 8 7 6 10 10 C 1.37874 * 120.00254 * 175.27176 * 8 7 6 11 11 N 1.31526 * 119.99648 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00371 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46878 * 60.00196 * 12 10 8 14 14 H 1.48501 * 109.46952 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46907 * 300.00049 * 12 10 8 16 16 C 1.46906 * 110.99853 * 66.05437 * 6 5 4 17 17 C 1.53000 * 109.46721 * 191.45302 * 16 6 5 18 18 C 1.53003 * 117.49652 * 243.12322 * 17 16 6 19 19 C 1.53001 * 59.99958 * 252.51710 * 18 17 16 20 20 C 1.53002 * 109.47099 * 239.99687 * 2 1 3 21 21 C 1.50705 * 109.46815 * 60.00079 * 20 2 1 22 22 O 1.20819 * 120.00069 * 0.02562 * 21 20 2 23 23 O 1.34229 * 119.99379 * 179.97438 * 21 20 2 24 24 H 1.08996 * 109.46917 * 300.00617 * 1 2 3 25 25 H 1.09000 * 109.46504 * 59.99851 * 1 2 3 26 26 H 1.08995 * 109.47073 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46840 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47078 * 299.99618 * 3 2 1 29 29 H 1.08995 * 109.47195 * 59.99874 * 3 2 1 30 30 H 1.09002 * 109.47040 * 179.97438 * 4 2 1 31 31 H 1.09005 * 109.47104 * 60.00222 * 4 2 1 32 32 H 1.09006 * 109.46655 * 60.00485 * 5 4 2 33 33 H 1.08993 * 109.46967 * 300.00467 * 5 4 2 34 34 H 1.08998 * 109.47274 * 191.30733 * 7 6 5 35 35 H 1.08998 * 109.47445 * 311.30809 * 7 6 5 36 36 H 0.96997 * 119.99393 * 179.97438 * 11 10 8 37 37 H 1.09004 * 109.46529 * 311.44560 * 16 6 5 38 38 H 1.09000 * 109.47247 * 71.45048 * 16 6 5 39 39 H 1.08996 * 115.55208 * 28.83525 * 17 16 6 40 40 H 1.09003 * 117.49440 * 0.02562 * 18 17 16 41 41 H 1.08997 * 117.50078 * 145.02034 * 18 17 16 42 42 H 1.09000 * 117.49386 * 252.50844 * 19 18 17 43 43 H 1.08997 * 117.49838 * 107.49442 * 19 18 17 44 44 H 1.08993 * 109.47233 * 180.02562 * 20 2 1 45 45 H 1.09003 * 109.46800 * 300.00642 * 20 2 1 46 46 H 0.96703 * 116.99640 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 0.0001 2.4985 6 7 2.0192 -0.6928 3.6979 7 6 1.3635 -0.1779 4.9075 8 6 -0.0735 -0.6311 4.9315 9 1 -0.4821 -1.1755 4.0930 10 6 -0.8667 -0.3508 6.0239 11 7 -0.3690 0.3118 7.0452 12 14 -2.6482 -0.9121 6.0533 13 1 -2.7029 -2.3917 5.9406 14 1 -3.2791 -0.4897 7.3296 15 1 -3.3784 -0.3014 4.9136 16 6 3.4805 -0.5890 3.8066 17 6 3.9806 -1.5473 4.8895 18 6 4.6642 -0.9350 6.1137 19 6 5.4940 -1.6831 5.0684 20 6 2.0401 -0.7213 -1.2492 21 6 1.5377 -0.0109 -2.4797 22 8 0.8435 0.9717 -2.3689 23 8 1.8624 -0.4693 -3.6988 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 3.1300 -0.7216 1.2491 31 1 1.6766 -1.7489 1.2493 32 1 0.4400 0.0001 2.4985 33 1 1.8934 1.0277 2.4985 34 1 1.8789 -0.5574 5.7897 35 1 1.4009 0.9115 4.9054 36 1 -0.9271 0.5093 7.8135 37 1 3.9354 -0.8511 2.8513 38 1 3.7536 0.4325 4.0711 39 1 3.3734 -2.4389 5.0451 40 1 4.7573 0.1505 6.1478 41 1 4.5067 -1.4237 7.0752 42 1 5.8824 -2.6640 5.3422 43 1 6.1334 -1.0898 4.4147 44 1 3.1300 -0.7217 -1.2490 45 1 1.6766 -1.7490 -1.2492 46 1 1.5163 0.0194 -4.4581 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573477145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:23 Heat of formation + Delta-G solvation = -77.737266 kcal Electronic energy + Delta-G solvation = -23260.494681 eV Core-core repulsion = 19957.570963 eV Total energy + Delta-G solvation = -3302.923718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.68631 -38.30750 -37.23808 -36.06889 -34.92440 -32.45825 -29.69680 -28.06534 -27.51779 -27.04899 -25.03617 -23.20576 -22.01090 -21.69309 -20.59552 -19.46582 -18.56162 -18.02473 -16.55687 -16.36955 -16.08637 -15.42774 -15.03050 -14.56990 -14.36408 -14.00585 -13.81981 -13.47244 -13.27141 -12.90558 -12.65301 -12.32034 -12.12528 -11.96371 -11.73010 -11.67738 -11.22723 -11.16841 -11.03885 -10.94806 -10.84999 -10.74273 -10.64747 -10.58657 -10.25846 -10.12186 -9.95858 -9.80951 -9.72731 -9.26679 -9.07715 -8.36055 -7.17014 -5.96659 -3.97241 2.10317 2.94163 3.36554 3.40511 3.43450 4.24125 4.46815 4.62559 4.79925 4.85130 5.06606 5.29772 5.34420 5.37164 5.38776 5.45044 5.47761 5.55714 5.70445 5.76609 5.92098 5.95302 6.02459 6.07422 6.09723 6.12460 6.18426 6.21111 6.28947 6.32038 6.36600 6.45854 6.47265 6.50273 6.68036 6.76774 6.81076 6.90419 7.38884 7.44371 7.80158 7.87031 8.19409 8.30556 8.62702 9.10156 9.66303 11.13986 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.004884 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.141537 B = 5731.296325 C = 7585.575525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.049 4.049 3 C -0.157 4.157 4 C -0.105 4.105 5 C 0.063 3.937 6 N -0.534 5.534 7 C 0.193 3.807 8 C -0.503 4.503 9 H 0.061 0.939 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.084 3.916 17 C -0.128 4.128 18 C -0.179 4.179 19 C -0.190 4.190 20 C -0.104 4.104 21 C 0.477 3.523 22 O -0.503 6.503 23 O -0.523 6.523 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.021 0.979 34 H 0.040 0.960 35 H -0.016 1.016 36 H 0.260 0.740 37 H 0.064 0.936 38 H 0.020 0.980 39 H 0.111 0.889 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.506 -1.956 -15.781 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.049 4.049 3 C -0.214 4.214 4 C -0.143 4.143 5 C -0.065 4.065 6 N -0.258 5.258 7 C 0.068 3.932 8 C -0.542 4.542 9 H 0.079 0.921 10 C -0.145 4.145 11 N -0.539 5.539 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.203 1.203 16 C -0.044 4.044 17 C -0.147 4.147 18 C -0.216 4.216 19 C -0.228 4.228 20 C -0.142 4.142 21 C 0.320 3.680 22 O -0.391 6.391 23 O -0.335 6.335 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.001 0.999 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.038 0.962 39 H 0.129 0.871 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.121 0.879 45 H 0.124 0.876 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 8.288 -2.320 -15.253 17.513 hybrid contribution -0.959 0.910 -0.173 1.333 sum 7.329 -1.409 -15.426 17.136 Atomic orbital electron populations 1.22170 0.93785 1.01892 1.03602 1.20376 0.96769 0.95564 0.92240 1.22169 0.99895 0.95715 1.03571 1.21684 0.99892 0.99894 0.92808 1.22070 1.01526 0.93978 0.88930 1.62122 1.02253 1.57040 1.04420 1.19732 0.94140 0.92644 0.86641 1.21136 0.95173 1.35105 1.02795 0.92083 1.24963 0.98521 0.95469 0.95580 1.69956 1.36339 1.40617 1.06971 0.86624 0.84946 0.79128 0.77081 1.20243 1.21449 1.20339 1.21631 0.90743 0.95442 0.96632 1.22260 0.92945 1.01816 0.97648 1.22957 1.04671 0.99580 0.94384 1.22932 0.94529 1.01597 1.03712 1.21554 1.02997 1.00776 0.88849 1.23715 0.77074 0.82642 0.84581 1.90631 1.35608 1.26195 1.86684 1.84570 1.72502 1.59306 1.17137 0.91491 0.90989 0.93102 0.93585 0.90816 0.91848 0.92417 0.91119 0.89569 0.96090 0.94211 0.99859 0.93013 0.91735 0.96166 0.87072 0.89328 0.89191 0.89404 0.89566 0.87886 0.87632 0.73564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 7.82 37.16 0.29 -1.92 16 2 C -0.05 -0.62 0.54 -154.50 -0.08 -0.70 16 3 C -0.16 -2.05 7.82 37.16 0.29 -1.76 16 4 C -0.10 -1.50 4.22 -26.73 -0.11 -1.61 16 5 C 0.06 1.17 4.09 -3.83 -0.02 1.15 16 6 N -0.53 -11.18 4.45 -236.06 -1.05 -12.23 16 7 C 0.19 4.99 4.60 -4.97 -0.02 4.97 16 8 C -0.50 -14.05 8.52 -34.44 -0.29 -14.34 16 9 H 0.06 1.68 7.37 -52.49 -0.39 1.30 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 12 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 C 0.08 1.50 5.11 -3.82 -0.02 1.48 16 17 C -0.13 -2.20 4.73 -90.62 -0.43 -2.63 16 18 C -0.18 -2.89 10.05 -26.73 -0.27 -3.16 16 19 C -0.19 -2.63 10.25 -26.73 -0.27 -2.91 16 20 C -0.10 -1.04 4.88 -27.88 -0.14 -1.17 16 21 C 0.48 5.05 7.74 36.01 0.28 5.33 16 22 O -0.50 -6.68 12.11 -18.74 -0.23 -6.91 16 23 O -0.52 -4.26 13.42 -39.25 -0.53 -4.79 16 24 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 25 H 0.07 1.03 5.52 -51.93 -0.29 0.74 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.01 5.52 -51.93 -0.29 0.72 16 29 H 0.06 0.92 6.43 -51.93 -0.33 0.58 16 30 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.78 5.25 -51.93 -0.27 1.51 16 33 H 0.02 0.39 6.41 -51.93 -0.33 0.06 16 34 H 0.04 1.10 6.87 -51.93 -0.36 0.74 16 35 H -0.02 -0.46 8.06 -51.93 -0.42 -0.88 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.06 1.01 6.04 -51.93 -0.31 0.70 16 38 H 0.02 0.38 7.84 -51.93 -0.41 -0.03 16 39 H 0.11 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.09 1.45 8.03 -51.93 -0.42 1.03 16 41 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 42 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.41 1.67 9.10 45.56 0.41 2.08 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -31.43 356.77 -8.60 -40.03 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.00 Total: 3.60 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -0.89 Total: -15.80 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: -0.31 Total: -38.27 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.75 Total: -11.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.43 -8.60 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573477145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.706 kcal (2) G-P(sol) polarization free energy of solvation -31.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds