Wall clock time and date at job start Tue Mar 31 2020 06:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46866 * 2 1 4 4 C 1.53004 * 109.47318 * 301.26227 * 3 2 1 5 5 C 1.53000 * 109.47098 * 294.79220 * 4 3 2 6 6 C 1.52995 * 109.47273 * 61.26448 * 3 2 1 7 7 N 1.46900 * 109.47277 * 64.99872 * 6 3 2 8 8 C 1.46889 * 110.99956 * 66.05048 * 7 6 3 9 9 C 1.50710 * 109.47127 * 199.69005 * 8 7 6 10 10 H 1.07997 * 119.99517 * 5.03313 * 9 8 7 11 11 C 1.37871 * 120.00010 * 185.03362 * 9 8 7 12 12 N 1.31513 * 120.00037 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99762 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47340 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.46823 * 120.00522 * 13 11 9 16 16 H 1.48499 * 109.46934 * 239.99994 * 13 11 9 17 17 C 1.46901 * 110.99830 * 190.00247 * 7 6 3 18 18 C 1.53001 * 109.47150 * 75.42190 * 17 7 6 19 19 H 1.09006 * 115.56441 * 31.48209 * 18 17 7 20 20 C 1.52999 * 117.49893 * 245.78995 * 18 17 7 21 21 C 1.53003 * 117.49860 * 177.16531 * 18 17 7 22 22 H 1.08999 * 117.51812 * 0.02562 * 21 18 17 23 23 C 1.50703 * 117.49807 * 214.97978 * 21 18 17 24 24 O 1.20816 * 120.00136 * 359.97438 * 23 21 18 25 25 O 1.34232 * 119.99556 * 179.97438 * 23 21 18 26 26 H 1.09001 * 109.47007 * 301.49238 * 1 2 3 27 27 H 1.08993 * 109.47753 * 61.49593 * 1 2 3 28 28 H 1.08996 * 109.46821 * 181.50100 * 1 2 3 29 29 H 1.08998 * 109.47041 * 240.00602 * 2 1 3 30 30 H 1.08994 * 109.47706 * 120.00314 * 2 1 3 31 31 H 1.09004 * 109.47457 * 181.26457 * 3 2 1 32 32 H 1.08995 * 109.47201 * 54.79304 * 4 3 2 33 33 H 1.08998 * 109.46935 * 174.79643 * 4 3 2 34 34 H 1.08999 * 109.47154 * 306.15541 * 5 4 3 35 35 H 1.09001 * 109.46947 * 66.15533 * 5 4 3 36 36 H 1.08994 * 109.47046 * 186.15244 * 5 4 3 37 37 H 1.09007 * 109.46958 * 304.99663 * 6 3 2 38 38 H 1.09003 * 109.47282 * 185.00315 * 6 3 2 39 39 H 1.09007 * 109.47393 * 319.68334 * 8 7 6 40 40 H 1.08996 * 109.47624 * 79.68848 * 8 7 6 41 41 H 0.97003 * 119.99765 * 179.97438 * 12 11 9 42 42 H 1.09000 * 109.47559 * 315.42535 * 17 7 6 43 43 H 1.09004 * 109.47061 * 195.41874 * 17 7 6 44 44 H 1.09000 * 117.49737 * 145.02504 * 20 18 17 45 45 H 1.09000 * 117.51810 * 359.97438 * 20 18 17 46 46 H 0.96698 * 116.99543 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5041 2.1729 -1.2331 5 6 2.0922 1.5405 -2.4960 6 6 1.5561 2.1545 1.2648 7 7 2.1665 1.5265 2.4442 8 6 3.6202 1.7367 2.4594 9 6 4.2658 0.7173 3.3623 10 1 3.6683 -0.0634 3.8093 11 6 5.6192 0.7814 3.6176 12 7 6.3466 1.7324 3.0736 13 14 6.4192 -0.4818 4.7373 14 1 5.3907 -1.4386 5.2187 15 1 7.4660 -1.2183 3.9843 16 1 7.0372 0.2071 5.8986 17 6 1.5501 2.0213 3.6824 18 6 0.1728 1.3788 3.8586 19 1 0.0696 0.3701 3.4583 20 6 -1.0494 2.2963 3.7854 21 6 -0.6071 1.7171 5.1307 22 1 -0.1394 2.3977 5.8421 23 6 -1.4591 0.6304 5.7343 24 8 -1.5076 -0.4587 5.2134 25 8 -2.1640 0.8724 6.8507 26 1 -0.3633 0.5368 0.8763 27 1 -0.3634 0.4904 -0.9030 28 1 -0.3633 -1.0273 0.0269 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.1297 1.4427 -0.0227 32 1 0.4174 2.0931 -1.2590 33 1 1.7903 3.2236 -1.1858 34 1 3.1794 1.5217 -2.4206 35 1 1.7176 0.5222 -2.6007 36 1 1.7984 2.1269 -3.3666 37 1 0.4709 2.0772 1.3327 38 1 1.8434 3.2051 1.2229 39 1 4.0137 1.6278 1.4487 40 1 3.8386 2.7389 2.8282 41 1 7.2988 1.7777 3.2535 42 1 1.4411 3.1044 3.6265 43 1 2.1828 1.7631 4.5316 44 1 -1.9566 1.8913 3.3370 45 1 -0.8726 3.3578 3.6121 46 1 -2.6960 0.1446 7.2004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573699376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:01 Heat of formation + Delta-G solvation = -85.160318 kcal Electronic energy + Delta-G solvation = -23430.784089 eV Core-core repulsion = 20127.538484 eV Total energy + Delta-G solvation = -3303.245606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.37338 -38.38278 -37.03022 -35.92330 -34.73566 -32.40030 -30.79598 -28.31349 -27.69822 -25.52304 -24.65146 -23.56865 -22.67540 -21.41012 -20.42720 -19.74453 -18.26443 -18.06929 -16.91786 -16.37020 -15.60681 -15.28215 -14.85770 -14.74180 -14.47384 -14.10901 -13.74372 -13.61908 -12.76221 -12.64993 -12.54073 -12.45921 -12.13414 -11.83099 -11.73059 -11.60480 -11.51703 -11.40626 -11.00223 -10.99043 -10.80600 -10.66493 -10.56259 -10.53292 -10.29371 -10.05457 -9.92037 -9.88602 -9.62790 -9.44154 -9.15876 -8.38528 -7.21324 -5.99818 -4.00386 2.13608 2.97153 3.32399 3.40444 3.46254 3.85310 4.44383 4.65516 4.83193 4.99384 5.08291 5.26716 5.32398 5.34073 5.39122 5.52239 5.60276 5.63285 5.72851 5.81547 5.82678 5.92786 6.02221 6.07825 6.09896 6.13118 6.20023 6.25093 6.31004 6.38085 6.42663 6.45693 6.49178 6.67541 6.69953 6.77108 6.95098 7.09485 7.28763 7.38823 7.87779 7.91849 8.16811 8.22093 8.58450 9.09564 9.64177 11.10411 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.006740 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.700552 B = 4153.593488 C = 6559.388910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.085 4.085 4 C -0.121 4.121 5 C -0.150 4.150 6 C 0.060 3.940 7 N -0.529 5.529 8 C 0.190 3.810 9 C -0.501 4.501 10 H 0.064 0.936 11 C 0.055 3.945 12 N -0.900 5.900 13 Si 0.893 3.107 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.286 1.286 17 C 0.091 3.909 18 C -0.089 4.089 19 H 0.127 0.873 20 C -0.153 4.153 21 C -0.175 4.175 22 H 0.133 0.867 23 C 0.510 3.490 24 O -0.512 6.512 25 O -0.517 6.517 26 H 0.057 0.943 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.045 0.955 37 H 0.065 0.935 38 H 0.017 0.983 39 H 0.034 0.966 40 H -0.006 1.006 41 H 0.259 0.741 42 H 0.026 0.974 43 H 0.090 0.910 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.947 1.955 -1.802 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.104 4.104 4 C -0.159 4.159 5 C -0.207 4.207 6 C -0.068 4.068 7 N -0.252 5.252 8 C 0.065 3.935 9 C -0.540 4.540 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.540 5.540 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.211 1.211 16 H -0.212 1.212 17 C -0.038 4.038 18 C -0.107 4.107 19 H 0.144 0.856 20 C -0.190 4.190 21 C -0.195 4.195 22 H 0.151 0.849 23 C 0.353 3.647 24 O -0.400 6.400 25 O -0.328 6.328 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.035 0.965 39 H 0.051 0.949 40 H 0.011 0.989 41 H 0.069 0.931 42 H 0.044 0.956 43 H 0.108 0.892 44 H 0.115 0.885 45 H 0.124 0.876 46 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -14.609 1.537 -2.142 14.845 hybrid contribution 0.348 -0.189 1.040 1.113 sum -14.261 1.348 -1.102 14.367 Atomic orbital electron populations 1.21846 0.97136 1.00587 1.01104 1.21377 0.94821 0.96363 1.02045 1.21232 1.01184 0.95172 0.92809 1.21601 1.00285 0.99167 0.94799 1.21772 1.01211 1.00617 0.97098 1.22145 0.98609 0.94768 0.91307 1.61960 1.07088 1.56868 0.99332 1.19811 0.80403 0.95564 0.97743 1.21237 0.92650 1.12367 1.27724 0.91771 1.24973 0.97421 0.95833 0.96388 1.69967 1.06572 1.32832 1.44647 0.86519 0.79381 0.81566 0.80454 1.19636 1.21110 1.21230 1.21564 0.91867 0.94733 0.95638 1.22729 0.92650 1.01373 0.93979 0.85554 1.23204 1.00328 1.00453 0.95040 1.21788 1.04061 1.00674 0.92958 0.84881 1.22476 0.76930 0.87957 0.77385 1.90724 1.62352 1.25595 1.61327 1.84528 1.58547 1.47704 1.42044 0.92387 0.93596 0.93843 0.93368 0.90113 0.90329 0.92121 0.92743 0.92703 0.92709 0.93595 0.91707 0.96515 0.94851 0.98852 0.93101 0.95624 0.89164 0.88519 0.87551 0.73464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.22 37.16 0.34 -1.70 16 2 C -0.11 -1.71 5.34 -26.73 -0.14 -1.86 16 3 C -0.09 -1.39 2.11 -90.62 -0.19 -1.58 16 4 C -0.12 -1.62 5.16 -26.73 -0.14 -1.76 16 5 C -0.15 -1.85 9.52 37.16 0.35 -1.50 16 6 C 0.06 1.02 3.98 -3.83 -0.02 1.00 16 7 N -0.53 -10.54 3.79 -236.07 -0.89 -11.43 16 8 C 0.19 4.69 4.59 -4.98 -0.02 4.67 16 9 C -0.50 -13.68 8.51 -34.44 -0.29 -13.98 16 10 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -26.37 13.29 55.43 0.74 -25.63 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 C 0.09 1.62 5.08 -3.82 -0.02 1.60 16 18 C -0.09 -1.34 4.69 -90.62 -0.43 -1.77 16 19 H 0.13 2.19 7.67 -51.93 -0.40 1.79 16 20 C -0.15 -1.82 9.86 -26.73 -0.26 -2.08 16 21 C -0.18 -2.29 6.02 -91.77 -0.55 -2.84 16 22 H 0.13 1.58 8.14 -51.93 -0.42 1.15 16 23 C 0.51 6.95 8.11 36.01 0.29 7.25 16 24 O -0.51 -8.60 17.02 -18.74 -0.32 -8.92 16 25 O -0.52 -5.43 13.42 -39.26 -0.53 -5.96 16 26 H 0.06 0.81 6.28 -51.93 -0.33 0.49 16 27 H 0.05 0.56 6.37 -51.93 -0.33 0.23 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.72 6.77 -51.93 -0.35 0.37 16 30 H 0.08 1.51 7.72 -51.93 -0.40 1.11 16 31 H 0.08 1.51 6.08 -51.93 -0.32 1.20 16 32 H 0.06 0.75 6.16 -51.93 -0.32 0.43 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.66 6.91 -51.93 -0.36 0.30 16 36 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.99 5.45 -51.92 -0.28 0.70 16 38 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 39 H 0.03 0.88 5.82 -51.93 -0.30 0.58 16 40 H -0.01 -0.17 8.00 -51.93 -0.42 -0.59 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 43 H 0.09 1.82 7.30 -51.93 -0.38 1.44 16 44 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.11 1.12 8.04 -51.93 -0.42 0.70 16 46 H 0.41 2.46 9.10 45.56 0.41 2.88 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -30.85 364.53 -8.79 -39.64 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.09 Total: 3.31 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.17 Total: -13.11 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.16 Total: -37.06 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.85 Total: -14.88 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.85 -8.79 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573699376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.520 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds