Wall clock time and date at job start Tue Mar 31 2020 05:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47560 * 2 1 4 4 C 1.53001 * 109.46918 * 120.00457 * 2 1 3 5 5 C 1.52994 * 109.47378 * 59.99431 * 4 2 1 6 6 C 1.52999 * 109.47085 * 60.00170 * 5 4 2 7 7 C 1.52991 * 109.47168 * 299.99909 * 6 5 4 8 8 H 1.09001 * 109.47392 * 299.99785 * 7 6 5 9 9 C 1.52999 * 109.47168 * 179.97438 * 7 6 5 10 10 N 1.46495 * 109.47220 * 63.21322 * 9 7 6 11 11 C 1.36939 * 120.00177 * 267.48495 * 10 9 7 12 12 H 1.07998 * 119.99998 * 140.78699 * 11 10 9 13 13 C 1.38807 * 119.99820 * 320.78602 * 11 10 9 14 14 N 1.31621 * 120.00118 * 158.69520 * 13 11 10 15 15 Si 1.86801 * 120.00207 * 338.69285 * 13 11 10 16 16 H 1.48506 * 109.47198 * 95.32587 * 15 13 11 17 17 H 1.48500 * 109.47243 * 215.32609 * 15 13 11 18 18 H 1.48504 * 109.46984 * 335.32967 * 15 13 11 19 19 C 1.46508 * 119.99997 * 87.48341 * 10 9 7 20 20 C 1.52994 * 109.47328 * 270.00262 * 19 10 9 21 21 C 1.50694 * 109.47140 * 180.02562 * 20 19 10 22 22 O 1.20824 * 120.00081 * 359.97438 * 21 20 19 23 23 O 1.34236 * 119.99777 * 180.02562 * 21 20 19 24 24 C 1.52999 * 109.47348 * 60.00190 * 7 6 5 25 25 H 1.09001 * 109.46660 * 300.00172 * 1 2 3 26 26 H 1.08999 * 109.46840 * 59.99965 * 1 2 3 27 27 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47523 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47073 * 299.99893 * 3 2 1 30 30 H 1.09001 * 109.46966 * 59.99755 * 3 2 1 31 31 H 1.09001 * 109.46729 * 299.99706 * 4 2 1 32 32 H 1.09002 * 109.46826 * 179.97438 * 4 2 1 33 33 H 1.09002 * 109.47523 * 300.00040 * 5 4 2 34 34 H 1.08999 * 109.47073 * 180.02562 * 5 4 2 35 35 H 1.09004 * 109.47051 * 179.97438 * 6 5 4 36 36 H 1.09004 * 109.47226 * 60.00332 * 6 5 4 37 37 H 1.09001 * 109.47346 * 303.21061 * 9 7 6 38 38 H 1.09004 * 109.47141 * 183.21266 * 9 7 6 39 39 H 0.96993 * 120.00474 * 179.97438 * 14 13 11 40 40 H 1.08998 * 109.46876 * 30.00151 * 19 10 9 41 41 H 1.09000 * 109.46762 * 150.00126 * 19 10 9 42 42 H 1.09008 * 109.46857 * 300.00245 * 20 19 10 43 43 H 1.09002 * 109.47291 * 59.99416 * 20 19 10 44 44 H 0.96699 * 116.99678 * 179.97438 * 23 21 20 45 45 H 1.09001 * 109.47205 * 59.99481 * 24 7 6 46 46 H 1.09000 * 109.47746 * 180.02562 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0398 -2.8850 0.0000 7 6 1.5299 -2.1638 -1.2492 8 1 0.4399 -2.1638 -1.2493 9 6 2.0404 -2.8847 -2.4984 10 7 1.4903 -4.2419 -2.5381 11 6 2.1931 -5.2818 -1.9905 12 1 1.6742 -6.0563 -1.4452 13 6 3.5722 -5.3405 -2.1362 14 7 4.2925 -6.0578 -1.3001 15 14 4.4061 -4.4014 -3.5190 16 1 4.8780 -3.0880 -3.0113 17 1 5.5646 -5.1836 -4.0203 18 1 3.4386 -4.1859 -4.6248 19 6 0.1883 -4.4866 -3.1637 20 6 -0.9163 -4.3448 -2.1146 21 6 -2.2554 -4.5971 -2.7580 22 8 -2.3198 -4.8626 -3.9349 23 8 -3.3769 -4.5259 -2.0236 24 6 2.0400 -0.7214 -1.2493 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9562 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6766 -0.2075 2.1392 32 1 3.1300 -0.7218 1.2490 33 1 0.4399 -2.1638 1.2492 34 1 1.8928 -2.6775 2.1394 35 1 1.6768 -3.9128 0.0002 36 1 3.1299 -2.8852 0.0000 37 1 3.1289 -2.9345 -2.4699 38 1 1.7248 -2.3386 -3.3875 39 1 5.2561 -6.0991 -1.4021 40 1 0.0267 -3.7619 -3.9616 41 1 0.1682 -5.4944 -3.5785 42 1 -0.7546 -5.0695 -1.3166 43 1 -0.8961 -3.3370 -1.6997 44 1 -4.2122 -4.6952 -2.4804 45 1 3.1300 -0.7214 -1.2492 46 1 1.6764 -0.2073 -2.1390 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593884294.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:11 Heat of formation + Delta-G solvation = -103.891933 kcal Electronic energy + Delta-G solvation = -24401.103382 eV Core-core repulsion = 21097.045513 eV Total energy + Delta-G solvation = -3304.057869 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95513 -39.33233 -36.45184 -35.78528 -32.79081 -32.08828 -31.29254 -29.76010 -27.19859 -25.93281 -25.46552 -24.88396 -21.90300 -21.35892 -20.11238 -19.84812 -18.09236 -17.80757 -16.75142 -16.16456 -15.74442 -15.25699 -14.68653 -14.46815 -14.11196 -13.86795 -13.72036 -13.35876 -13.13835 -12.77466 -12.54894 -12.38463 -12.22127 -11.98553 -11.79972 -11.63748 -11.42678 -11.30177 -11.08866 -10.99019 -10.84175 -10.68165 -10.60755 -10.51578 -10.26337 -10.17070 -10.02927 -9.65257 -9.51261 -9.36900 -9.27536 -8.51232 -6.85053 -6.01417 -3.45458 2.51200 3.30629 3.36617 3.47614 3.53517 4.51828 4.84636 4.94382 5.03045 5.13543 5.28419 5.44074 5.50497 5.61907 5.63193 5.68217 5.74901 5.80985 5.85087 5.90833 5.92258 5.98852 6.02249 6.08097 6.14249 6.21300 6.25734 6.27742 6.36545 6.41448 6.47720 6.51798 6.54743 6.67804 6.68154 6.79284 6.81826 6.88039 6.96800 7.22114 7.43578 8.04355 8.15097 8.35597 8.96204 9.68861 10.08983 11.13406 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.010065 B = 0.008484 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2781.138629 B = 3299.488686 C = 5157.715938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.121 4.121 6 C -0.099 4.099 7 C -0.102 4.102 8 H 0.063 0.937 9 C 0.137 3.863 10 N -0.599 5.599 11 C -0.268 4.268 12 H 0.079 0.921 13 C 0.044 3.956 14 N -0.896 5.896 15 Si 0.874 3.126 16 H -0.286 1.286 17 H -0.303 1.303 18 H -0.269 1.269 19 C 0.161 3.839 20 C -0.135 4.135 21 C 0.479 3.521 22 O -0.523 6.523 23 O -0.525 6.525 24 C -0.105 4.105 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.105 0.895 43 H 0.098 0.902 44 H 0.400 0.600 45 H 0.057 0.943 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.979 11.064 2.993 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.143 4.143 5 C -0.159 4.159 6 C -0.137 4.137 7 C -0.122 4.122 8 H 0.081 0.919 9 C 0.011 3.989 10 N -0.320 5.320 11 C -0.396 4.396 12 H 0.096 0.904 13 C -0.157 4.157 14 N -0.537 5.537 15 Si 0.704 3.296 16 H -0.214 1.214 17 H -0.231 1.231 18 H -0.194 1.194 19 C 0.034 3.966 20 C -0.175 4.175 21 C 0.322 3.678 22 O -0.411 6.411 23 O -0.336 6.336 24 C -0.143 4.143 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.258 0.742 45 H 0.076 0.924 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.415 10.969 2.901 14.126 hybrid contribution 0.054 0.461 -0.942 1.050 sum -8.361 11.430 1.960 14.296 Atomic orbital electron populations 1.21945 0.95070 1.02165 1.00672 1.20503 0.95414 0.94402 0.96004 1.21868 1.00813 0.96015 1.01033 1.21574 1.00328 0.96146 0.96221 1.21637 1.00198 0.94902 0.99138 1.21425 1.00448 1.00338 0.91473 1.21801 0.99711 0.92963 0.97726 0.91864 1.21313 0.97942 0.85328 0.94267 1.44106 1.18004 1.03141 1.66740 1.18636 0.89407 1.03319 1.28282 0.90393 1.25421 0.96688 0.96666 0.96930 1.69850 1.05918 1.42754 1.35134 0.86982 0.78831 0.78644 0.85148 1.21389 1.23091 1.19364 1.20648 0.83960 1.00890 0.91125 1.22410 0.87400 1.04800 1.02900 1.24148 0.86571 0.71841 0.85249 1.90681 1.87679 1.44932 1.17841 1.84625 1.17995 1.83751 1.47216 1.21656 1.00425 0.96174 0.96081 0.93449 0.93292 0.91694 0.92939 0.93058 0.93185 0.93092 0.92394 0.92544 0.92852 0.89378 0.92782 0.92520 0.94648 0.92739 0.93723 0.91721 0.87641 0.88385 0.74225 0.92408 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 7.78 37.16 0.29 -1.41 16 2 C -0.06 -0.82 0.77 -154.51 -0.12 -0.93 16 3 C -0.14 -1.58 8.47 37.15 0.31 -1.27 16 4 C -0.11 -1.42 4.73 -26.73 -0.13 -1.55 16 5 C -0.12 -1.83 5.65 -26.73 -0.15 -1.98 16 6 C -0.10 -1.83 4.73 -26.74 -0.13 -1.96 16 7 C -0.10 -1.73 2.11 -90.63 -0.19 -1.92 16 8 H 0.06 1.02 4.29 -51.93 -0.22 0.80 16 9 C 0.14 2.77 3.95 -4.04 -0.02 2.75 16 10 N -0.60 -13.04 1.85 -173.24 -0.32 -13.36 16 11 C -0.27 -6.87 8.00 -15.06 -0.12 -6.99 16 12 H 0.08 2.17 8.06 -52.49 -0.42 1.74 16 13 C 0.04 1.20 5.29 -17.43 -0.09 1.11 16 14 N -0.90 -26.01 13.97 55.49 0.78 -25.23 16 15 Si 0.87 21.68 25.06 -169.99 -4.26 17.42 16 16 H -0.29 -6.92 6.69 56.52 0.38 -6.54 16 17 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.16 3.10 5.00 -4.04 -0.02 3.08 16 20 C -0.13 -2.17 6.10 -27.89 -0.17 -2.34 16 21 C 0.48 7.34 8.33 36.00 0.30 7.64 16 22 O -0.52 -9.45 16.74 -18.75 -0.31 -9.76 16 23 O -0.52 -6.39 13.42 -39.27 -0.53 -6.92 16 24 C -0.11 -1.58 4.01 -26.73 -0.11 -1.69 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.83 4.81 -51.93 -0.25 0.58 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.87 6.46 -51.93 -0.34 1.54 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.29 3.54 -51.93 -0.18 1.10 16 38 H 0.04 0.67 7.93 -51.93 -0.41 0.26 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.04 0.84 7.87 -51.93 -0.41 0.43 16 41 H 0.06 1.34 8.00 -51.93 -0.42 0.92 16 42 H 0.11 1.75 8.14 -51.92 -0.42 1.33 16 43 H 0.10 1.47 6.02 -51.93 -0.31 1.16 16 44 H 0.40 3.06 9.10 45.56 0.41 3.47 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 345.39 15.07 5.20 5.20 Total: -1.00 -29.40 345.39 -6.89 -36.29 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -7.11 Total: 3.82 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.34 Total: -7.46 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.45 Total: -38.59 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.84 Total: -16.69 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.26 Total: 17.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.40 -6.89 -36.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593884294.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.600 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds