Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47299 * 2 1 4 4 C 1.53001 * 109.46832 * 240.00312 * 2 1 3 5 5 C 1.53003 * 109.47205 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46875 * 59.99733 * 5 4 2 7 7 C 1.53001 * 109.47422 * 300.00134 * 6 5 4 8 8 N 1.46895 * 109.46891 * 300.00063 * 7 6 5 9 9 C 1.46894 * 111.00253 * 306.58876 * 8 7 6 10 10 C 1.53006 * 109.47549 * 173.79142 * 9 8 7 11 11 C 1.52994 * 109.47338 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47010 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99912 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00312 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46992 * 60.00153 * 16 14 12 18 18 H 1.48496 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47406 * 300.00607 * 16 14 12 20 20 C 1.50702 * 109.47035 * 179.97438 * 7 6 5 21 21 O 1.20827 * 119.99823 * 265.49602 * 20 7 6 22 22 O 1.34232 * 119.99792 * 85.49849 * 20 7 6 23 23 C 1.52995 * 109.47142 * 120.00507 * 2 1 3 24 24 H 1.09006 * 109.46680 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47080 * 59.99394 * 1 2 3 26 26 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47730 * 191.53550 * 3 2 1 28 28 H 1.09001 * 109.47479 * 311.53927 * 3 2 1 29 29 H 1.09000 * 109.47305 * 71.53636 * 3 2 1 30 30 H 1.09004 * 109.47212 * 299.99640 * 4 2 1 31 31 H 1.09000 * 109.47310 * 59.99638 * 4 2 1 32 32 H 1.08997 * 109.47196 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.46962 * 300.00211 * 5 4 2 34 34 H 1.09000 * 109.46967 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47280 * 60.00525 * 6 5 4 36 36 H 1.00897 * 110.99965 * 182.63411 * 8 7 6 37 37 H 1.08999 * 109.47312 * 293.79132 * 9 8 7 38 38 H 1.09003 * 109.47469 * 53.79193 * 9 8 7 39 39 H 1.08999 * 109.46806 * 300.00300 * 10 9 8 40 40 H 1.09002 * 109.46254 * 59.99881 * 10 9 8 41 41 H 1.09007 * 109.47242 * 300.00183 * 11 10 9 42 42 H 1.09001 * 109.47124 * 60.00039 * 11 10 9 43 43 H 0.96997 * 119.99972 * 179.97438 * 15 14 12 44 44 H 0.96695 * 116.99445 * 179.97438 * 22 20 7 45 45 H 1.08992 * 109.47506 * 59.99567 * 23 2 1 46 46 H 1.09006 * 109.47075 * 299.99442 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 7 4.0597 0.6625 1.2498 9 6 5.5197 0.7042 1.0927 10 6 5.9753 2.1571 0.9423 11 6 7.4957 2.2004 0.7781 12 6 7.9445 3.6315 0.6306 13 1 7.2178 4.4302 0.6524 14 6 9.2827 3.9212 0.4690 15 7 10.1676 2.9485 0.4430 16 14 9.8389 5.6950 0.2856 17 1 9.4490 6.4636 1.4949 18 1 11.3147 5.7370 0.1262 19 1 9.1950 6.2945 -0.9108 20 6 4.0709 -1.4335 2.4799 21 8 3.3809 -2.2655 3.0200 22 8 5.2839 -1.1427 2.9757 23 6 2.0400 -0.7213 1.2491 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1105 1.4494 -0.2055 28 1 1.5187 2.0122 -0.7692 29 1 1.8543 1.8935 0.9748 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.9333 -1.2360 -2.1388 33 1 3.9337 0.3057 -1.2488 34 1 5.1694 -1.4435 0.0006 35 1 3.7158 -2.4710 -0.0001 36 1 3.7721 1.1477 2.0864 37 1 5.9923 0.2642 1.9708 38 1 5.8059 0.1400 0.2050 39 1 5.5026 2.5970 0.0642 40 1 5.6890 2.7211 1.8301 41 1 7.9688 1.7602 1.6560 42 1 7.7815 1.6363 -0.1098 43 1 11.1091 3.1523 0.3290 44 1 5.5618 -1.6247 3.7666 45 1 1.6767 -1.7489 1.2491 46 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593895350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = -108.801360 kcal Electronic energy + Delta-G solvation = -24156.114718 eV Core-core repulsion = 20851.843960 eV Total energy + Delta-G solvation = -3304.270758 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.22777 -39.08983 -36.39519 -35.64144 -33.69670 -32.50957 -31.55832 -29.34181 -27.18603 -26.41456 -25.82128 -24.34160 -22.58603 -21.82932 -20.26158 -19.96592 -18.43315 -17.90884 -17.02872 -16.30699 -15.77583 -15.41757 -14.93313 -14.51898 -14.45983 -14.16587 -13.86598 -13.72120 -13.45367 -12.74801 -12.63949 -12.43257 -12.29898 -12.04385 -11.88785 -11.61981 -11.56680 -11.40275 -11.25006 -11.12391 -10.92353 -10.81730 -10.65380 -10.53837 -10.41536 -10.23284 -10.11887 -9.98605 -9.56959 -9.29992 -9.03699 -8.31480 -8.03878 -5.97204 -3.99039 2.11736 2.95224 3.34977 3.39341 3.41918 4.21311 4.48490 4.49772 4.55046 4.81860 4.97919 5.02335 5.22458 5.29459 5.37594 5.38699 5.48768 5.57115 5.66508 5.69101 5.73459 5.84289 5.91299 5.96654 6.02231 6.07438 6.11008 6.16079 6.25197 6.38102 6.43658 6.46430 6.48770 6.50995 6.75265 6.77199 7.06802 7.15171 7.21931 7.44921 7.71799 7.86140 7.87566 8.03854 8.46886 9.08224 9.64812 11.14110 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.004205 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.129398 B = 6657.539434 C = 7355.368826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.053 4.053 3 C -0.151 4.151 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.108 4.108 7 C 0.133 3.867 8 N -0.650 5.650 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.024 3.976 12 C -0.518 4.518 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.447 3.553 21 O -0.524 6.524 22 O -0.499 6.499 23 C -0.084 4.084 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.115 0.885 28 H 0.032 0.968 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.343 0.657 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.260 0.740 44 H 0.396 0.604 45 H 0.074 0.926 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.632 -9.273 -0.070 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.053 4.053 3 C -0.208 4.208 4 C -0.144 4.144 5 C -0.151 4.151 6 C -0.146 4.146 7 C 0.040 3.960 8 N -0.282 5.282 9 C -0.094 4.094 10 C -0.141 4.141 11 C -0.014 4.014 12 C -0.557 4.557 13 H 0.072 0.928 14 C -0.144 4.144 15 N -0.536 5.536 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.203 1.203 20 C 0.287 3.713 21 O -0.411 6.411 22 O -0.311 6.311 23 C -0.122 4.122 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.133 0.867 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.162 0.838 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.032 0.968 42 H 0.033 0.967 43 H 0.070 0.930 44 H 0.255 0.745 45 H 0.093 0.907 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.871 -9.229 -0.952 19.254 hybrid contribution 0.853 0.230 1.519 1.757 sum -16.018 -8.999 0.567 18.382 Atomic orbital electron populations 1.21887 0.95191 1.01179 1.01613 1.20383 0.94227 0.96986 0.93677 1.22402 1.05572 0.92697 1.00164 1.21590 0.95686 0.99725 0.97427 1.21507 0.95404 1.02514 0.95690 1.21670 1.01664 0.98420 0.92835 1.21163 0.96341 0.89122 0.89412 1.61254 1.14175 1.09737 1.42984 1.22716 0.84799 0.99927 1.01992 1.21584 0.99537 0.92495 1.00455 1.19037 0.88598 0.96789 0.96957 1.21226 0.92197 0.92835 1.49395 0.92791 1.25014 0.96939 0.96991 0.95493 1.69958 1.01683 1.31417 1.50560 0.86685 0.77407 0.85406 0.78652 1.20314 1.21364 1.20253 1.25611 0.78737 0.80602 0.86312 1.90665 1.57332 1.32853 1.60270 1.84939 1.34873 1.64648 1.46651 1.21532 0.90415 1.01525 0.98683 0.92893 0.92646 0.93197 0.86746 0.94915 0.93744 0.92654 0.91889 0.92016 0.89297 0.90310 0.91479 0.83848 0.91929 0.90951 0.92816 0.93767 0.96806 0.96700 0.93041 0.74478 0.90739 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.45 37.16 0.31 -0.96 16 2 C -0.05 -0.53 0.77 -154.51 -0.12 -0.65 16 3 C -0.15 -1.70 7.06 37.15 0.26 -1.43 16 4 C -0.11 -1.05 4.73 -26.73 -0.13 -1.18 16 5 C -0.11 -1.24 5.50 -26.73 -0.15 -1.38 16 6 C -0.11 -1.25 4.17 -26.73 -0.11 -1.36 16 7 C 0.13 1.59 0.54 -132.78 -0.07 1.52 16 8 N -0.65 -8.20 1.60 -101.17 -0.16 -8.36 16 9 C 0.03 0.51 4.68 -3.82 -0.02 0.50 16 10 C -0.10 -2.00 5.46 -26.73 -0.15 -2.14 16 11 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 12 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 13 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.45 5.89 7.10 36.01 0.26 6.15 16 21 O -0.52 -8.04 16.86 -18.75 -0.32 -8.36 16 22 O -0.50 -6.08 9.98 -39.26 -0.39 -6.47 16 23 C -0.08 -0.92 3.37 -26.76 -0.09 -1.02 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.11 1.45 3.69 -51.93 -0.19 1.26 16 28 H 0.03 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.04 0.50 7.95 -51.93 -0.41 0.08 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.10 5.67 -51.93 -0.29 0.81 16 34 H 0.08 0.98 6.19 -51.93 -0.32 0.66 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.34 4.24 8.66 -39.29 -0.34 3.90 16 37 H 0.06 1.03 5.13 -51.93 -0.27 0.76 16 38 H 0.07 1.16 5.69 -51.93 -0.30 0.86 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.40 3.31 9.10 45.56 0.41 3.73 16 45 H 0.07 0.86 7.86 -51.93 -0.41 0.45 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 345.74 15.07 5.21 5.21 Total: -1.00 -30.88 345.74 -7.64 -38.52 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.15 Total: 3.77 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: -0.55 Total: -14.81 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.57 Total: -34.43 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.71 Total: -14.83 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.88 -7.64 -38.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593895350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.280 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds