Wall clock time and date at job start Tue Mar 31 2020 05:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47299 * 2 1 4 4 C 1.53001 * 109.46832 * 240.00312 * 2 1 3 5 5 C 1.53003 * 109.47205 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.46875 * 59.99733 * 5 4 2 7 7 C 1.53001 * 109.47422 * 300.00134 * 6 5 4 8 8 N 1.46895 * 109.46891 * 300.00063 * 7 6 5 9 9 C 1.46894 * 111.00253 * 306.58876 * 8 7 6 10 10 C 1.53006 * 109.47549 * 173.79142 * 9 8 7 11 11 C 1.52994 * 109.47338 * 180.02562 * 10 9 8 12 12 C 1.50700 * 109.47010 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00009 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00103 * 179.97438 * 12 11 10 15 15 N 1.31523 * 119.99912 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00312 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46992 * 60.00153 * 16 14 12 18 18 H 1.48496 * 109.47280 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47406 * 300.00607 * 16 14 12 20 20 C 1.50702 * 109.47035 * 179.97438 * 7 6 5 21 21 O 1.20827 * 119.99823 * 265.49602 * 20 7 6 22 22 O 1.34232 * 119.99792 * 85.49849 * 20 7 6 23 23 C 1.52995 * 109.47142 * 120.00507 * 2 1 3 24 24 H 1.09006 * 109.46680 * 299.99809 * 1 2 3 25 25 H 1.08993 * 109.47080 * 59.99394 * 1 2 3 26 26 H 1.08992 * 109.47274 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47730 * 191.53550 * 3 2 1 28 28 H 1.09001 * 109.47479 * 311.53927 * 3 2 1 29 29 H 1.09000 * 109.47305 * 71.53636 * 3 2 1 30 30 H 1.09004 * 109.47212 * 299.99640 * 4 2 1 31 31 H 1.09000 * 109.47310 * 59.99638 * 4 2 1 32 32 H 1.08997 * 109.47196 * 179.97438 * 5 4 2 33 33 H 1.08997 * 109.46962 * 300.00211 * 5 4 2 34 34 H 1.09000 * 109.46967 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47280 * 60.00525 * 6 5 4 36 36 H 1.00897 * 110.99965 * 182.63411 * 8 7 6 37 37 H 1.08999 * 109.47312 * 293.79132 * 9 8 7 38 38 H 1.09003 * 109.47469 * 53.79193 * 9 8 7 39 39 H 1.08999 * 109.46806 * 300.00300 * 10 9 8 40 40 H 1.09002 * 109.46254 * 59.99881 * 10 9 8 41 41 H 1.09007 * 109.47242 * 300.00183 * 11 10 9 42 42 H 1.09001 * 109.47124 * 60.00039 * 11 10 9 43 43 H 0.96997 * 119.99972 * 179.97438 * 15 14 12 44 44 H 0.96695 * 116.99445 * 179.97438 * 22 20 7 45 45 H 1.08992 * 109.47506 * 59.99567 * 23 2 1 46 46 H 1.09006 * 109.47075 * 299.99442 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2491 6 6 4.0794 -1.4435 0.0002 7 6 3.5695 -0.7223 1.2495 8 7 4.0597 0.6625 1.2498 9 6 5.5197 0.7042 1.0927 10 6 5.9753 2.1571 0.9423 11 6 7.4957 2.2004 0.7781 12 6 7.9445 3.6315 0.6306 13 1 7.2178 4.4302 0.6524 14 6 9.2827 3.9212 0.4690 15 7 10.1676 2.9485 0.4430 16 14 9.8389 5.6950 0.2856 17 1 9.4490 6.4636 1.4949 18 1 11.3147 5.7370 0.1262 19 1 9.1950 6.2945 -0.9108 20 6 4.0709 -1.4335 2.4799 21 8 3.3809 -2.2655 3.0200 22 8 5.2839 -1.1427 2.9757 23 6 2.0400 -0.7213 1.2491 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1105 1.4494 -0.2055 28 1 1.5187 2.0122 -0.7692 29 1 1.8543 1.8935 0.9748 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.9333 -1.2360 -2.1388 33 1 3.9337 0.3057 -1.2488 34 1 5.1694 -1.4435 0.0006 35 1 3.7158 -2.4710 -0.0001 36 1 3.7721 1.1477 2.0864 37 1 5.9923 0.2642 1.9708 38 1 5.8059 0.1400 0.2050 39 1 5.5026 2.5970 0.0642 40 1 5.6890 2.7211 1.8301 41 1 7.9688 1.7602 1.6560 42 1 7.7815 1.6363 -0.1098 43 1 11.1091 3.1523 0.3290 44 1 5.5618 -1.6247 3.7666 45 1 1.6767 -1.7489 1.2491 46 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593895350.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:56 Heat of formation + Delta-G solvation = -126.434315 kcal Electronic energy + Delta-G solvation = -24156.879340 eV Core-core repulsion = 20851.843960 eV Total energy + Delta-G solvation = -3305.035381 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.23722 -40.06221 -37.53269 -36.80493 -35.42329 -33.76891 -32.95507 -30.70141 -28.15063 -27.41029 -27.27797 -25.41459 -24.20494 -22.81266 -21.79794 -21.03937 -19.43308 -18.92120 -18.42238 -18.02770 -16.86831 -16.49917 -16.45777 -15.95653 -15.44494 -15.35129 -15.11860 -14.70470 -14.41010 -14.23722 -13.83118 -13.69224 -13.49419 -13.27935 -13.05335 -12.79968 -12.74393 -12.65873 -12.54284 -12.37458 -12.24412 -12.10665 -12.05482 -11.72808 -11.63531 -11.44816 -11.30593 -11.11925 -10.99714 -10.91737 -10.81592 -10.49248 -9.13650 -8.15414 -6.25445 1.06225 1.42565 1.45070 1.52849 2.00675 2.44258 3.11316 3.17998 3.55629 3.64947 3.94979 4.11656 4.16205 4.31906 4.37962 4.41048 4.50539 4.61869 4.62998 4.78536 4.80259 4.91721 4.92556 5.01328 5.04504 5.09943 5.14794 5.23126 5.27295 5.29971 5.36186 5.36950 5.43581 5.48114 5.56482 5.59946 5.61679 5.64927 5.85264 5.91866 5.96734 6.15177 6.31621 6.34792 6.89950 6.92213 7.43487 8.96055 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.004205 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.129398 B = 6657.539434 C = 7355.368826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 C -0.149 4.149 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.108 4.108 7 C 0.136 3.864 8 N -0.638 5.638 9 C 0.050 3.950 10 C -0.086 4.086 11 C 0.028 3.972 12 C -0.540 4.540 13 H 0.059 0.941 14 C 0.000 4.000 15 N -0.934 5.934 16 Si 0.961 3.039 17 H -0.268 1.268 18 H -0.285 1.285 19 H -0.267 1.267 20 C 0.450 3.550 21 O -0.546 6.546 22 O -0.506 6.506 23 C -0.079 4.079 24 H 0.052 0.948 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.347 0.653 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.046 0.954 41 H -0.011 1.011 42 H -0.009 1.009 43 H 0.262 0.738 44 H 0.413 0.587 45 H 0.074 0.926 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.992 -8.748 -0.338 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.049 4.049 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.145 4.145 7 C 0.042 3.958 8 N -0.269 5.269 9 C -0.078 4.078 10 C -0.125 4.125 11 C -0.010 4.010 12 C -0.578 4.578 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.574 5.574 16 Si 0.785 3.215 17 H -0.193 1.193 18 H -0.210 1.210 19 H -0.192 1.192 20 C 0.292 3.708 21 O -0.435 6.435 22 O -0.319 6.319 23 C -0.117 4.117 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.166 0.834 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.007 0.993 42 H 0.009 0.991 43 H 0.071 0.929 44 H 0.275 0.725 45 H 0.092 0.908 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.242 -8.701 -1.209 20.247 hybrid contribution 1.302 0.027 1.630 2.086 sum -16.940 -8.675 0.421 19.037 Atomic orbital electron populations 1.21855 0.94015 1.01769 1.01959 1.20361 0.95114 0.96110 0.93344 1.22334 1.04639 0.93526 1.00073 1.21580 0.94690 1.00357 0.97509 1.21476 0.96306 1.01478 0.95607 1.21677 1.00934 0.98975 0.92965 1.21237 0.97072 0.88254 0.89215 1.61195 1.11916 1.10537 1.43258 1.22368 0.86668 0.97088 1.01715 1.21310 0.95496 0.95166 1.00481 1.18937 0.92338 0.95122 0.94598 1.21693 0.92722 0.94187 1.49183 0.92321 1.25933 0.97122 1.01627 0.95042 1.70092 1.02031 1.33807 1.51488 0.85570 0.76942 0.79830 0.79118 1.19307 1.21015 1.19214 1.25773 0.78618 0.80154 0.86276 1.90657 1.57942 1.33934 1.61000 1.84878 1.34477 1.64929 1.47620 1.21516 0.89341 1.01624 0.99199 0.92844 0.92053 0.92497 0.88176 0.94718 0.93942 0.91701 0.91186 0.91188 0.90889 0.91522 0.90647 0.83397 0.92481 0.91245 0.92775 0.93534 0.99294 0.99077 0.92927 0.72532 0.90767 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.45 71.98 0.61 -1.57 16 2 C -0.05 -0.90 0.77 -52.18 -0.04 -0.94 16 3 C -0.15 -3.11 7.06 71.98 0.51 -2.60 16 4 C -0.10 -1.83 4.73 30.60 0.14 -1.68 16 5 C -0.11 -2.28 5.50 30.60 0.17 -2.11 16 6 C -0.11 -2.38 4.17 30.59 0.13 -2.25 16 7 C 0.14 3.10 0.54 2.77 0.00 3.10 16 8 N -0.64 -15.58 1.60 -473.99 -0.76 -16.34 16 9 C 0.05 1.54 4.68 86.31 0.40 1.95 16 10 C -0.09 -3.37 5.46 30.59 0.17 -3.20 16 11 C 0.03 1.43 4.97 29.85 0.15 1.58 16 12 C -0.54 -30.47 9.11 25.60 0.23 -30.24 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 16 Si 0.96 44.12 29.54 68.60 2.03 46.14 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 C 0.45 11.46 7.10 71.24 0.51 11.97 16 21 O -0.55 -16.23 16.86 21.96 0.37 -15.86 16 22 O -0.51 -11.95 9.98 -51.43 -0.51 -12.46 16 23 C -0.08 -1.62 3.37 30.58 0.10 -1.51 16 24 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 2.43 3.69 -2.39 -0.01 2.42 16 28 H 0.03 0.70 8.10 -2.39 -0.02 0.68 16 29 H 0.04 0.89 7.95 -2.39 -0.02 0.87 16 30 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.07 1.75 5.67 -2.39 -0.01 1.74 16 34 H 0.07 1.64 6.19 -2.39 -0.01 1.62 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.35 8.20 8.66 -89.70 -0.78 7.42 16 37 H 0.06 1.88 5.13 -2.39 -0.01 1.86 16 38 H 0.07 2.23 5.69 -2.39 -0.01 2.22 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H -0.01 -0.64 8.14 -2.38 -0.02 -0.65 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 44 H 0.41 6.56 9.10 -74.06 -0.67 5.89 16 45 H 0.07 1.56 7.86 -2.39 -0.02 1.55 16 46 H 0.06 1.32 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -65.66 345.74 4.48 -61.18 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: -0.48 Total: 20.77 kcal Atomic # 6 Polarization: -30.59 SS G_CDS: 3.54 Total: -27.05 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -0.47 Total: -72.72 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.14 Total: -28.32 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.66 4.48 -61.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593895350.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.251 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds