Wall clock time and date at job start Tue Mar 31 2020 05:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00065 * 2 1 4 4 H 1.48505 * 109.46605 * 269.99275 * 3 2 1 5 5 H 1.48495 * 109.47441 * 29.99204 * 3 2 1 6 6 H 1.48499 * 109.47390 * 149.99560 * 3 2 1 7 7 C 1.38812 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00592 * 201.42865 * 7 2 1 9 9 N 1.36942 * 119.99682 * 21.43240 * 7 2 1 10 10 C 1.46502 * 119.99968 * 217.57684 * 9 7 2 11 11 C 1.52999 * 109.46963 * 275.31033 * 10 9 7 12 12 C 1.50696 * 109.47140 * 180.02562 * 11 10 9 13 13 O 1.20834 * 119.99745 * 359.97438 * 12 11 10 14 14 O 1.34228 * 120.00472 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99924 * 37.57812 * 9 7 2 16 16 C 1.52995 * 109.47693 * 89.99996 * 15 9 7 17 17 C 1.52997 * 109.47806 * 179.97438 * 16 15 9 18 18 C 1.54062 * 108.87542 * 297.97698 * 17 16 15 19 19 C 1.54067 * 112.81795 * 197.50646 * 18 17 16 20 20 C 1.50480 * 112.49395 * 318.28036 * 19 18 17 21 21 C 1.54238 * 108.51615 * 94.15326 * 20 19 18 22 22 C 1.45535 * 112.40729 * 280.00732 * 21 20 19 23 23 C 1.50477 * 108.87896 * 175.00055 * 17 16 15 24 24 H 0.97000 * 120.00235 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47250 * 35.30758 * 10 9 7 26 26 H 1.08997 * 109.47161 * 155.30885 * 10 9 7 27 27 H 1.09002 * 109.46913 * 299.99931 * 11 10 9 28 28 H 1.08997 * 109.47302 * 59.99939 * 11 10 9 29 29 H 0.96701 * 117.00708 * 179.97438 * 14 12 11 30 30 H 1.09004 * 109.47703 * 329.99586 * 15 9 7 31 31 H 1.09007 * 109.47055 * 210.00019 * 15 9 7 32 32 H 1.09007 * 109.46964 * 59.99594 * 16 15 9 33 33 H 1.09007 * 109.46889 * 300.00125 * 16 15 9 34 34 H 1.09002 * 108.85156 * 56.44125 * 17 16 15 35 35 H 1.08998 * 108.81609 * 318.36368 * 18 17 16 36 36 H 1.09000 * 108.81838 * 76.75380 * 18 17 16 37 37 H 1.08995 * 108.87749 * 197.50718 * 19 18 17 38 38 H 1.08994 * 108.88171 * 79.05637 * 19 18 17 39 39 H 1.09000 * 109.62783 * 334.44367 * 20 19 18 40 40 H 1.08998 * 109.62671 * 213.85876 * 20 19 18 41 41 H 1.09001 * 108.89425 * 40.76538 * 21 20 19 42 42 H 1.09007 * 108.89082 * 159.34957 * 21 20 19 43 43 H 1.09007 * 108.89555 * 182.68862 * 22 21 20 44 44 H 1.08997 * 108.89794 * 301.28230 * 22 21 20 45 45 H 1.08996 * 109.62725 * 95.21352 * 23 17 16 46 46 H 1.09007 * 109.78505 * 334.73185 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4002 5 1 1.4476 2.6527 0.6998 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0342 -1.2344 0.3422 9 7 1.3965 -2.3472 -0.4323 10 6 1.6641 -3.6209 0.2404 11 6 2.9329 -4.2479 -0.3409 12 6 3.2079 -5.5583 0.3506 13 8 2.4653 -5.9503 1.2195 14 8 4.2775 -6.2901 0.0013 15 6 0.4725 -2.2986 -1.5680 16 6 1.2479 -2.5283 -2.8668 17 6 0.2827 -2.4782 -4.0528 18 6 -0.7488 -3.6128 -3.9043 19 6 -1.4854 -3.9267 -5.2206 20 6 -1.8669 -2.6833 -5.9775 21 6 -0.7584 -2.3759 -7.0050 22 6 0.3881 -1.7124 -6.4023 23 6 1.0735 -2.5823 -5.3288 24 1 -0.4850 0.8400 -0.0004 25 1 1.8011 -3.4464 1.3076 26 1 0.8223 -4.2963 0.0877 27 1 2.7960 -4.4223 -1.4081 28 1 3.7747 -3.5725 -0.1882 29 1 4.4127 -7.1232 0.4733 30 1 -0.0113 -1.3224 -1.6015 31 1 -0.2841 -3.0752 -1.4544 32 1 1.7315 -3.5046 -2.8334 33 1 2.0044 -1.7518 -2.9804 34 1 -0.2418 -1.5227 -4.0400 35 1 -0.2353 -4.5127 -3.5657 36 1 -1.4834 -3.3240 -3.1526 37 1 -2.3890 -4.4921 -4.9929 38 1 -0.8384 -4.5379 -5.8497 39 1 -1.9652 -1.8482 -5.2840 40 1 -2.8119 -2.8457 -6.4959 41 1 -0.4277 -3.3107 -7.4577 42 1 -1.1678 -1.7325 -7.7839 43 1 1.1122 -1.4799 -7.1833 44 1 0.0557 -0.7822 -5.9416 45 1 1.0990 -3.6204 -5.6601 46 1 2.0902 -2.2259 -5.1629 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601072753.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:40 Heat of formation + Delta-G solvation = -111.040113 kcal Electronic energy + Delta-G solvation = -23528.166826 eV Core-core repulsion = 20223.798989 eV Total energy + Delta-G solvation = -3304.367838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85575 -38.94933 -36.30969 -35.70108 -33.45674 -32.07353 -32.04744 -29.94770 -27.90947 -25.02445 -24.71164 -23.99203 -22.13134 -20.74578 -20.31575 -19.89380 -18.57382 -17.76553 -16.69609 -16.05201 -15.60750 -15.43917 -14.85827 -14.61285 -14.47123 -13.80387 -13.62133 -13.49532 -13.06866 -12.83125 -12.59968 -12.34931 -12.29543 -12.01195 -11.70421 -11.49502 -11.24815 -11.15130 -10.85905 -10.75174 -10.63008 -10.56592 -10.42674 -10.24086 -10.22405 -10.15764 -10.01505 -9.97936 -9.74072 -9.45512 -9.38837 -8.47724 -6.59955 -5.79844 -3.39515 2.58482 3.35131 3.41313 3.43508 3.46951 4.47538 4.77575 4.86237 5.04957 5.25045 5.34893 5.38475 5.44699 5.51710 5.56982 5.61510 5.65947 5.70911 5.73222 5.88830 6.02629 6.10291 6.12471 6.20274 6.26770 6.29294 6.32779 6.38735 6.39858 6.52112 6.53833 6.59564 6.63517 6.68723 6.72579 6.76445 6.94645 6.97945 7.07367 7.28470 7.75045 7.81777 8.22406 8.50980 9.18606 9.79537 10.37586 11.20062 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.009966 B = 0.006158 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.822183 B = 4545.782944 C = 6533.570268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.017 3.983 3 Si 0.895 3.105 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.265 4.265 8 H 0.060 0.940 9 N -0.581 5.581 10 C 0.160 3.840 11 C -0.134 4.134 12 C 0.478 3.522 13 O -0.522 6.522 14 O -0.526 6.526 15 C 0.145 3.855 16 C -0.131 4.131 17 C -0.083 4.083 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.120 4.120 23 C -0.109 4.109 24 H 0.255 0.745 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.096 0.904 28 H 0.101 0.899 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.196 -7.764 -10.811 13.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.184 4.184 3 Si 0.725 3.275 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.202 1.202 7 C -0.395 4.395 8 H 0.078 0.922 9 N -0.300 5.300 10 C 0.032 3.968 11 C -0.174 4.174 12 C 0.321 3.679 13 O -0.410 6.410 14 O -0.337 6.337 15 C 0.019 3.981 16 C -0.170 4.170 17 C -0.102 4.102 18 C -0.147 4.147 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.157 4.157 23 C -0.147 4.147 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.114 0.886 28 H 0.119 0.881 29 H 0.257 0.743 30 H 0.111 0.889 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.771 -7.330 -10.741 13.026 hybrid contribution 0.648 0.273 0.238 0.742 sum 1.419 -7.057 -10.503 12.733 Atomic orbital electron populations 1.70013 1.05560 1.25734 1.51207 1.25162 0.94971 0.98680 0.99614 0.86414 0.79512 0.83766 0.77817 1.21242 1.21757 1.20248 1.18996 0.94169 0.85604 1.40735 0.92205 1.43815 1.51874 1.02452 1.31843 1.20624 0.91861 0.88311 0.96026 1.22441 1.04649 0.89040 1.01313 1.24229 0.76662 0.86385 0.80612 1.90679 1.47642 1.71409 1.31317 1.84630 1.47657 1.36894 1.64566 1.21053 0.90746 1.02408 0.83871 1.22397 0.98466 1.00162 0.96009 1.20916 0.95993 0.98660 0.94667 1.21974 0.97873 0.98462 0.96376 1.21345 0.99525 0.97400 0.97170 1.21345 0.97372 0.98934 0.97926 1.20465 0.96164 1.00462 0.97970 1.20501 0.97210 0.99523 0.98513 1.21415 0.98863 0.99414 0.94992 0.93535 0.92833 0.93747 0.88572 0.88088 0.74344 0.88898 0.95731 0.94091 0.92357 0.91613 0.92655 0.91977 0.92957 0.92668 0.91275 0.92632 0.92640 0.93009 0.92993 0.92099 0.92388 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.83 11.47 55.49 0.64 -24.19 16 2 C 0.02 0.45 4.95 -17.43 -0.09 0.36 16 3 Si 0.90 21.10 29.60 -169.99 -5.03 16.07 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.27 -6.97 9.45 -15.06 -0.14 -7.11 16 8 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 9 N -0.58 -13.82 2.43 -173.24 -0.42 -14.24 16 10 C 0.16 3.37 5.01 -4.04 -0.02 3.35 16 11 C -0.13 -2.33 6.11 -27.89 -0.17 -2.50 16 12 C 0.48 7.82 8.33 36.00 0.30 8.12 16 13 O -0.52 -10.01 16.74 -18.76 -0.31 -10.32 16 14 O -0.53 -6.81 13.42 -39.25 -0.53 -7.34 16 15 C 0.14 3.21 5.05 -4.05 -0.02 3.19 16 16 C -0.13 -2.41 4.74 -26.73 -0.13 -2.54 16 17 C -0.08 -1.29 1.71 -91.33 -0.16 -1.45 16 18 C -0.11 -1.57 4.42 -25.62 -0.11 -1.68 16 19 C -0.12 -1.41 5.31 -27.43 -0.15 -1.56 16 20 C -0.12 -1.37 5.61 -27.34 -0.15 -1.53 16 21 C -0.11 -1.24 5.26 -29.60 -0.16 -1.40 16 22 C -0.12 -1.46 5.26 -29.60 -0.16 -1.61 16 23 C -0.11 -1.47 5.13 -27.34 -0.14 -1.61 16 24 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 25 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 26 H 0.04 0.93 7.79 -51.93 -0.40 0.53 16 27 H 0.10 1.58 6.64 -51.93 -0.34 1.24 16 28 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 29 H 0.40 3.30 9.10 45.56 0.41 3.72 16 30 H 0.09 2.37 5.52 -51.93 -0.29 2.08 16 31 H 0.02 0.53 6.54 -51.92 -0.34 0.19 16 32 H 0.04 0.72 6.57 -51.92 -0.34 0.38 16 33 H 0.06 1.18 7.96 -51.92 -0.41 0.76 16 34 H 0.07 1.11 6.62 -51.93 -0.34 0.77 16 35 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.06 0.97 7.36 -51.93 -0.38 0.58 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.64 6.63 -51.93 -0.34 0.29 16 39 H 0.07 0.89 6.97 -51.93 -0.36 0.53 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.58 7.47 -51.93 -0.39 0.19 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.80 7.46 -51.93 -0.39 0.41 16 45 H 0.06 0.74 6.98 -51.93 -0.36 0.38 16 46 H 0.06 0.86 7.60 -51.92 -0.39 0.47 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -29.41 351.48 -8.82 -38.23 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.17 Total: 4.47 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.29 Total: -7.97 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.21 Total: -38.44 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.84 Total: -17.66 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.41 -8.82 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601072753.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.811 kcal (2) G-P(sol) polarization free energy of solvation -29.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds