Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.53004 * 109.46663 * 240.00401 * 2 1 3 5 5 C 1.50697 * 109.47387 * 59.99813 * 4 2 1 6 6 H 1.08000 * 120.00144 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99821 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00108 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99834 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46679 * 90.00592 * 9 7 5 11 11 H 1.48496 * 109.47358 * 209.99839 * 9 7 5 12 12 H 1.48495 * 109.47285 * 330.00458 * 9 7 5 13 13 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 14 14 N 1.46905 * 109.47039 * 299.99787 * 13 2 1 15 15 C 1.46901 * 110.99870 * 180.02562 * 14 13 2 16 16 C 1.53004 * 109.46916 * 180.02562 * 15 14 13 17 17 C 1.50698 * 110.01893 * 58.60825 * 16 15 14 18 18 O 1.20824 * 119.99971 * 120.69932 * 17 16 15 19 19 O 1.34227 * 119.99732 * 300.69983 * 17 16 15 20 20 C 1.54266 * 110.03040 * 297.16551 * 16 15 14 21 21 C 1.54890 * 104.19372 * 217.10880 * 20 16 15 22 22 C 1.54890 * 102.75049 * 37.94266 * 21 20 16 23 23 C 1.53874 * 110.02791 * 180.02562 * 16 15 14 24 24 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 25 25 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 26 26 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 29 29 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 30 30 H 1.09001 * 109.46514 * 180.02562 * 4 2 1 31 31 H 1.08998 * 109.46924 * 299.99657 * 4 2 1 32 32 H 0.97004 * 119.99990 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.47393 * 180.02562 * 13 2 1 34 34 H 1.08998 * 109.47408 * 59.99713 * 13 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 14 13 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 15 14 13 37 37 H 1.08995 * 109.47111 * 59.99900 * 15 14 13 38 38 H 0.96706 * 117.00236 * 180.02562 * 19 17 16 39 39 H 1.08998 * 110.48332 * 335.78324 * 20 16 15 40 40 H 1.08995 * 110.48821 * 98.42734 * 20 16 15 41 41 H 1.09006 * 110.75373 * 279.62845 * 21 20 16 42 42 H 1.08997 * 110.75604 * 156.25639 * 21 20 16 43 43 H 1.09002 * 110.48632 * 203.38597 * 22 21 20 44 44 H 1.08999 * 110.48869 * 80.73548 * 22 21 20 45 45 H 1.09006 * 110.03145 * 238.56409 * 23 16 15 46 46 H 1.09001 * 110.03480 * 359.97438 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0108 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8710 -0.4815 -3.7320 8 7 2.6270 -1.5508 -3.8527 9 14 1.2476 0.3987 -5.2572 10 1 2.2252 1.4410 -5.6613 11 1 1.0834 -0.5804 -6.3615 12 1 -0.0609 1.0353 -4.9613 13 6 2.0400 -0.7213 1.2491 14 7 1.5504 -0.0288 2.4486 15 6 2.0219 -0.6946 3.6702 16 6 1.4923 0.0532 4.8955 17 6 -0.0140 0.0888 4.8669 18 8 -0.6470 -0.3964 5.7745 19 8 -0.6522 0.6596 3.8333 20 6 2.0555 1.4891 4.9224 21 6 2.3042 1.7715 6.4248 22 6 2.8210 0.4083 6.9480 23 6 1.9796 -0.6337 6.1834 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1299 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1299 -0.7216 -1.2491 31 1 1.6766 -1.7488 -1.2493 32 1 2.8613 -1.8822 -4.7338 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6587 -1.7223 3.6872 37 1 3.1117 -0.6941 3.6868 38 1 -1.6189 0.6586 3.8595 39 1 2.9903 1.5427 4.3643 40 1 1.3275 2.1920 4.5174 41 1 1.3762 2.0503 6.9242 42 1 3.0605 2.5460 6.5523 43 1 2.6514 0.3224 8.0213 44 1 3.8793 0.2874 6.7170 45 1 1.1265 -0.9408 6.7884 46 1 2.5929 -1.5000 5.9355 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603591402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -122.180516 kcal Electronic energy + Delta-G solvation = -23653.257021 eV Core-core repulsion = 20348.406099 eV Total energy + Delta-G solvation = -3304.850922 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.02308 -38.16924 -37.38700 -36.21893 -34.16779 -32.22517 -30.01633 -28.94652 -26.95041 -26.29235 -25.53315 -23.91721 -23.42611 -21.99771 -20.98040 -19.53741 -18.22418 -17.68102 -16.73241 -16.44577 -16.13811 -15.10382 -14.97294 -14.79683 -14.63764 -14.05792 -13.85122 -13.51303 -13.32053 -12.96191 -12.58292 -12.14282 -11.98304 -11.79932 -11.74467 -11.61297 -11.37679 -11.24765 -11.21602 -11.04427 -10.90278 -10.81618 -10.77013 -10.71532 -10.47331 -10.37453 -10.21659 -10.08564 -9.64900 -8.98440 -8.80596 -8.30062 -8.04535 -5.94656 -3.94586 2.05698 2.86511 3.34347 3.40904 3.43581 4.08754 4.33399 4.47406 4.52783 4.78612 4.98466 5.08888 5.21345 5.26743 5.36886 5.41255 5.45543 5.57903 5.64452 5.70380 5.72926 5.77039 5.84244 5.86829 6.02898 6.05629 6.08271 6.17287 6.27623 6.37924 6.39075 6.55344 6.71066 6.82241 6.86531 7.23950 7.24141 7.30089 7.42318 7.70731 7.73103 7.85749 7.91042 8.05969 8.50635 9.10926 9.68138 11.17054 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032426 B = 0.003505 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.292795 B = 7987.385719 C = 8180.609557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.057 4.057 3 C -0.115 4.115 4 C 0.033 3.967 5 C -0.506 4.506 6 H 0.059 0.941 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.275 1.275 13 C 0.069 3.931 14 N -0.685 5.685 15 C 0.070 3.930 16 C -0.052 4.052 17 C 0.490 3.510 18 O -0.520 6.520 19 O -0.502 6.502 20 C -0.096 4.096 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.044 0.956 30 H 0.015 0.985 31 H 0.012 0.988 32 H 0.258 0.742 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.350 0.650 36 H 0.028 0.972 37 H 0.088 0.912 38 H 0.407 0.593 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.774 4.441 20.255 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.057 4.057 3 C -0.173 4.173 4 C -0.004 4.004 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.200 1.200 13 C -0.060 4.060 14 N -0.323 5.323 15 C -0.060 4.060 16 C -0.054 4.054 17 C 0.333 3.667 18 O -0.408 6.408 19 O -0.313 6.313 20 C -0.133 4.133 21 C -0.170 4.170 22 C -0.159 4.159 23 C -0.157 4.157 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.039 0.961 35 H 0.175 0.825 36 H 0.046 0.954 37 H 0.106 0.894 38 H 0.266 0.734 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.107 0.893 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.975 4.652 20.352 20.900 hybrid contribution -1.513 -0.575 -1.003 1.904 sum -2.488 4.077 19.349 19.930 Atomic orbital electron populations 1.21778 0.96168 1.00232 1.00537 1.20605 0.94709 0.96154 0.94277 1.21590 0.99691 0.95780 1.00206 1.19127 0.96093 0.94956 0.90234 1.21244 1.30715 1.11842 0.90613 0.92282 1.25015 0.95446 0.95112 0.99041 1.69967 1.37390 1.23205 1.23245 0.86669 0.79235 0.79417 0.83121 1.20785 1.21434 1.19953 1.22111 0.99758 0.94596 0.89490 1.60679 1.18187 1.53021 1.00421 1.22035 1.01028 0.94302 0.88604 1.21290 0.86552 0.99731 0.97779 1.23475 0.91892 0.72951 0.78385 1.90664 1.68708 1.44015 1.37408 1.84558 1.27220 1.73574 1.45955 1.22326 1.02460 0.92423 0.96094 1.22620 1.01069 0.97374 0.95936 1.22328 0.99564 0.94407 0.99564 1.22315 1.00980 0.98383 0.94071 0.94475 0.91787 0.94345 0.94228 0.92813 0.93713 0.96698 0.97002 0.93196 0.91593 0.96116 0.82513 0.95387 0.89420 0.73432 0.89243 0.90436 0.91819 0.90992 0.91469 0.91212 0.89345 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 2 C -0.06 -1.13 0.60 -154.51 -0.09 -1.22 16 3 C -0.12 -2.21 8.06 37.16 0.30 -1.91 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.81 7.65 -34.44 -0.26 -14.07 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.27 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.07 1.18 4.65 -3.82 -0.02 1.16 16 14 N -0.68 -9.67 5.31 -113.78 -0.60 -10.28 16 15 C 0.07 0.84 4.28 -3.82 -0.02 0.82 16 16 C -0.05 -0.55 0.70 -154.54 -0.11 -0.66 16 17 C 0.49 5.80 6.80 36.00 0.24 6.05 16 18 O -0.52 -7.30 15.97 -18.75 -0.30 -7.60 16 19 O -0.50 -5.13 10.37 -39.25 -0.41 -5.53 16 20 C -0.10 -0.94 5.60 -25.07 -0.14 -1.08 16 21 C -0.13 -1.11 6.91 -24.74 -0.17 -1.28 16 22 C -0.12 -0.97 6.83 -25.10 -0.17 -1.14 16 23 C -0.12 -1.14 6.05 -25.64 -0.16 -1.30 16 24 H 0.04 0.59 6.57 -51.93 -0.34 0.25 16 25 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 26 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 1.10 6.62 -51.93 -0.34 0.76 16 29 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 30 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.35 4.92 3.67 -39.29 -0.14 4.78 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.99 8.12 -51.93 -0.42 0.56 16 38 H 0.41 2.51 9.10 45.56 0.41 2.93 16 39 H 0.09 0.91 7.84 -51.93 -0.41 0.50 16 40 H 0.08 0.82 7.64 -51.93 -0.40 0.42 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.09 0.97 6.40 -51.93 -0.33 0.63 16 46 H 0.08 0.66 7.67 -51.93 -0.40 0.26 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -31.22 352.70 -7.98 -39.20 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.19 Total: 3.05 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -0.51 Total: -14.59 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: 0.13 Total: -36.40 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: -0.71 Total: -13.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.22 -7.98 -39.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603591402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.976 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds