Wall clock time and date at job start Tue Mar 31 2020 06:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47297 * 66.33004 * 3 2 1 5 5 C 1.53001 * 109.47298 * 185.33901 * 4 3 2 6 6 C 1.53005 * 109.47195 * 186.32979 * 3 2 1 7 7 N 1.46902 * 109.47051 * 55.87560 * 6 3 2 8 8 C 1.46903 * 110.99660 * 66.66484 * 7 6 3 9 9 C 1.50704 * 109.46763 * 188.95705 * 8 7 6 10 10 H 1.07997 * 120.00486 * 245.10815 * 9 8 7 11 11 C 1.37876 * 119.99906 * 65.11299 * 9 8 7 12 12 N 1.31516 * 119.99839 * 9.03360 * 11 9 8 13 13 Si 1.86795 * 120.00385 * 189.03469 * 11 9 8 14 14 H 1.48508 * 109.46828 * 59.99732 * 13 11 9 15 15 H 1.48495 * 109.47716 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47065 * 299.99999 * 13 11 9 17 17 C 1.46901 * 110.99929 * 190.62048 * 7 6 3 18 18 C 1.52992 * 109.46813 * 72.28969 * 17 7 6 19 19 C 1.50699 * 115.55337 * 62.11377 * 18 17 7 20 20 O 1.20829 * 120.00153 * 123.61171 * 19 18 17 21 21 O 1.34234 * 119.99435 * 303.60573 * 19 18 17 22 22 C 1.53003 * 117.49974 * 276.43575 * 18 17 7 23 23 C 1.53001 * 117.49587 * 207.77756 * 18 17 7 24 24 H 1.09003 * 109.47162 * 299.99941 * 1 2 3 25 25 H 1.08994 * 109.47433 * 60.00372 * 1 2 3 26 26 H 1.09002 * 109.47199 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47296 * 239.99536 * 2 1 3 28 28 H 1.09001 * 109.47003 * 120.00138 * 2 1 3 29 29 H 1.08995 * 109.47366 * 306.32816 * 3 2 1 30 30 H 1.09005 * 109.47375 * 305.34248 * 4 3 2 31 31 H 1.09000 * 109.47493 * 65.34168 * 4 3 2 32 32 H 1.09000 * 109.46859 * 53.71169 * 5 4 3 33 33 H 1.08998 * 109.46961 * 173.70844 * 5 4 3 34 34 H 1.08998 * 109.47320 * 293.71016 * 5 4 3 35 35 H 1.09000 * 109.47187 * 295.87717 * 6 3 2 36 36 H 1.08998 * 109.47157 * 175.87978 * 6 3 2 37 37 H 1.09004 * 109.46998 * 68.96337 * 8 7 6 38 38 H 1.08993 * 109.47310 * 308.95588 * 8 7 6 39 39 H 0.97006 * 120.00279 * 180.02562 * 12 11 9 40 40 H 1.09000 * 109.46722 * 192.28784 * 17 7 6 41 41 H 1.08995 * 109.47019 * 312.28396 * 17 7 6 42 42 H 0.96706 * 116.99381 * 184.94724 * 21 19 18 43 43 H 1.09000 * 117.49897 * 0.02562 * 22 18 17 44 44 H 1.08999 * 117.50158 * 145.02657 * 22 18 17 45 45 H 1.09005 * 117.50214 * 214.97633 * 23 18 17 46 46 H 1.09004 * 117.50122 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6640 2.1163 1.3211 5 6 2.0553 3.5945 1.2691 6 6 3.5617 1.4454 -0.1590 7 7 3.9281 0.7121 -1.3780 8 6 3.4627 1.4200 -2.5782 9 6 3.6578 0.5414 -3.7869 10 1 4.3538 0.8326 -4.5596 11 6 2.9476 -0.6343 -3.9064 12 7 1.9754 -0.9039 -3.0626 13 14 3.3661 -1.8443 -5.2665 14 1 4.7748 -2.2898 -5.1165 15 1 2.4636 -3.0202 -5.1781 16 1 3.1931 -1.1852 -6.5859 17 6 5.3768 0.4756 -1.4348 18 6 5.7604 -0.5892 -0.4054 19 6 5.1423 -1.9476 -0.6142 20 8 5.8480 -2.9225 -0.7216 21 8 3.8076 -2.0746 -0.6807 22 6 5.9853 -0.1294 1.0365 23 6 7.1778 -0.5387 0.1685 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.5871 1.9879 -0.8279 30 1 0.5890 2.0304 1.4798 31 1 2.1923 1.6293 2.1407 32 1 1.6156 4.0559 0.3848 33 1 1.6882 4.0992 2.1628 34 1 3.1408 3.6816 1.2227 35 1 4.0184 0.9639 0.7057 36 1 3.9173 2.4731 -0.2325 37 1 4.0341 2.3400 -2.7017 38 1 2.4051 1.6607 -2.4708 39 1 1.4759 -1.7313 -3.1464 40 1 5.6500 0.1317 -2.4324 41 1 5.9052 1.4028 -1.2128 42 1 3.4546 -2.9728 -0.7417 43 1 5.8595 0.9317 1.2518 44 1 5.6864 -0.8096 1.8341 45 1 7.6630 -1.4881 0.3955 46 1 7.8372 0.2528 -0.1877 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605012601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:53 Heat of formation + Delta-G solvation = -72.584322 kcal Electronic energy + Delta-G solvation = -25166.707306 eV Core-core repulsion = 21864.007036 eV Total energy + Delta-G solvation = -3302.700270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.87286 -37.86285 -36.48912 -35.17636 -34.33742 -32.10783 -30.98775 -28.00540 -27.46809 -25.22791 -23.67507 -23.02403 -22.25538 -21.73130 -20.74547 -19.12797 -18.66050 -17.15842 -16.34286 -15.81638 -15.14939 -14.72853 -14.50187 -14.10184 -14.02022 -13.79338 -13.45230 -13.25126 -12.87619 -12.76802 -12.28102 -12.05500 -11.72147 -11.53321 -11.41904 -11.27654 -11.15557 -10.96939 -10.89898 -10.73257 -10.66358 -10.62814 -10.42171 -10.06881 -9.93839 -9.78824 -9.50699 -9.49305 -9.32914 -9.15920 -9.00399 -8.22763 -6.73690 -5.88124 -3.94732 2.85872 3.36098 3.40155 3.46686 3.65992 4.05705 4.51362 4.82079 5.05833 5.27411 5.31434 5.41592 5.46674 5.59158 5.74739 5.75919 5.79491 5.88561 6.02586 6.09650 6.11457 6.21508 6.26113 6.27736 6.33108 6.37394 6.43665 6.48544 6.51280 6.57013 6.64959 6.77650 6.92713 6.99636 7.06939 7.14792 7.26976 7.40927 7.51430 7.86665 8.15628 8.36844 8.54643 8.73572 8.74718 9.12570 9.73040 11.16526 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012050 B = 0.009171 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.124164 B = 3052.489283 C = 4139.705597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C -0.070 4.070 4 C -0.122 4.122 5 C -0.150 4.150 6 C 0.057 3.943 7 N -0.491 5.491 8 C 0.192 3.808 9 C -0.540 4.540 10 H 0.046 0.954 11 C 0.099 3.901 12 N -0.835 5.835 13 Si 0.868 3.132 14 H -0.280 1.280 15 H -0.289 1.289 16 H -0.281 1.281 17 C 0.105 3.895 18 C -0.111 4.111 19 C 0.531 3.469 20 O -0.548 6.548 21 O -0.453 6.453 22 C -0.157 4.157 23 C -0.154 4.154 24 H 0.028 0.972 25 H 0.048 0.952 26 H 0.037 0.963 27 H 0.153 0.847 28 H 0.028 0.972 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.042 0.958 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.005 0.995 37 H -0.029 1.029 38 H 0.045 0.955 39 H 0.256 0.744 40 H 0.091 0.909 41 H 0.021 0.979 42 H 0.391 0.609 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.008 2.878 9.587 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.089 4.089 4 C -0.160 4.160 5 C -0.207 4.207 6 C -0.072 4.072 7 N -0.215 5.215 8 C 0.068 3.932 9 C -0.578 4.578 10 H 0.064 0.936 11 C -0.108 4.108 12 N -0.469 5.469 13 Si 0.697 3.303 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.207 1.207 17 C -0.024 4.024 18 C -0.113 4.113 19 C 0.375 3.625 20 O -0.440 6.440 21 O -0.258 6.258 22 C -0.194 4.194 23 C -0.191 4.191 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.171 0.829 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.023 0.977 37 H -0.011 1.011 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.039 0.961 42 H 0.247 0.753 43 H 0.122 0.878 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.919 2.469 9.624 10.119 hybrid contribution 0.379 -0.557 -0.768 1.022 sum 2.298 1.912 8.856 9.347 Atomic orbital electron populations 1.21726 0.98662 0.99735 0.99570 1.21812 0.92950 0.95929 1.05602 1.21057 0.95178 0.97524 0.95159 1.21684 1.00609 0.94922 0.98797 1.21803 1.01176 0.97095 1.00654 1.22231 0.95764 0.94293 0.94893 1.62313 1.09232 1.48201 1.01745 1.19722 0.95824 0.90168 0.87513 1.20839 1.25392 1.07066 1.04494 0.93593 1.24730 0.94086 0.97306 0.94660 1.69793 1.18455 1.23632 1.35051 0.87088 0.78466 0.81490 0.83300 1.20600 1.21429 1.20689 1.21320 0.91247 0.92511 0.97337 1.21034 0.98607 0.93528 0.98093 1.21933 0.80901 0.89210 0.70430 1.90631 1.63806 1.40917 1.48679 1.84890 1.21823 1.35982 1.83150 1.23074 1.01777 1.02212 0.92360 1.23093 0.90185 1.03545 1.02298 0.95330 0.93293 0.94377 0.82899 0.95333 0.91739 0.92432 0.92996 0.93005 0.93912 0.93026 0.92314 0.97673 1.01117 0.93672 0.93440 0.89122 0.96119 0.75330 0.87825 0.88844 0.88040 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.70 37.16 0.36 -2.08 16 2 C -0.13 -2.37 5.15 -26.73 -0.14 -2.50 16 3 C -0.07 -1.25 1.65 -90.62 -0.15 -1.40 16 4 C -0.12 -1.81 5.29 -26.73 -0.14 -1.95 16 5 C -0.15 -2.00 9.52 37.16 0.35 -1.65 16 6 C 0.06 1.02 3.88 -3.82 -0.01 1.00 16 7 N -0.49 -10.09 2.44 -236.07 -0.58 -10.66 16 8 C 0.19 4.53 4.65 -4.97 -0.02 4.51 16 9 C -0.54 -13.99 7.94 -34.44 -0.27 -14.26 16 10 H 0.05 1.22 7.83 -52.49 -0.41 0.81 16 11 C 0.10 2.55 5.37 -17.82 -0.10 2.45 16 12 N -0.83 -20.99 10.97 55.43 0.61 -20.39 16 13 Si 0.87 20.67 29.55 -169.99 -5.02 15.65 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.10 2.03 4.72 -3.83 -0.02 2.01 16 18 C -0.11 -1.92 1.98 -155.66 -0.31 -2.23 16 19 C 0.53 10.36 7.63 36.01 0.27 10.64 16 20 O -0.55 -11.74 17.25 -18.75 -0.32 -12.07 16 21 O -0.45 -8.57 11.55 -39.27 -0.45 -9.02 16 22 C -0.16 -2.20 8.21 -26.69 -0.22 -2.42 16 23 C -0.15 -2.19 9.75 -26.69 -0.26 -2.45 16 24 H 0.03 0.44 6.50 -51.93 -0.34 0.10 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.15 3.28 3.93 -51.93 -0.20 3.07 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.30 6.59 -51.93 -0.34 0.95 16 30 H 0.06 0.84 6.39 -51.93 -0.33 0.50 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.68 6.99 -51.93 -0.36 0.32 16 35 H 0.06 1.00 4.91 -51.93 -0.26 0.74 16 36 H 0.01 0.10 6.90 -51.93 -0.36 -0.26 16 37 H -0.03 -0.69 8.13 -51.93 -0.42 -1.11 16 38 H 0.05 1.15 6.18 -51.93 -0.32 0.82 16 39 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 40 H 0.09 2.01 6.84 -51.93 -0.36 1.65 16 41 H 0.02 0.37 8.01 -51.93 -0.42 -0.04 16 42 H 0.39 6.09 9.11 45.56 0.41 6.51 16 43 H 0.10 1.34 7.27 -51.93 -0.38 0.97 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.10 1.46 7.85 -51.93 -0.41 1.05 16 46 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -27.43 355.39 -8.07 -35.50 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.00 Total: 5.97 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: -0.65 Total: -10.33 kcal Atomic # 7 Polarization: -31.08 SS G_CDS: 0.03 Total: -31.05 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.78 Total: -21.09 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.43 -8.07 -35.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605012601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.088 kcal (2) G-P(sol) polarization free energy of solvation -27.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds