Wall clock time and date at job start Tue Mar 31 2020 06:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47106 * 60.00162 * 6 5 3 8 8 C 1.53002 * 109.47128 * 300.00123 * 7 6 5 9 9 C 1.52997 * 109.46978 * 59.99726 * 8 7 6 10 10 H 1.09000 * 109.47140 * 180.02562 * 9 8 7 11 11 O 1.42895 * 109.47267 * 60.00316 * 9 8 7 12 12 C 1.42902 * 114.00177 * 89.99757 * 11 9 8 13 13 C 1.50699 * 109.47118 * 180.02562 * 12 11 9 14 14 O 1.21279 * 120.00314 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99806 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00184 * 0.02562 * 15 13 12 17 17 C 1.46500 * 120.00034 * 180.02562 * 15 13 12 18 18 C 1.50702 * 109.47084 * 90.00091 * 17 15 13 19 19 H 1.07991 * 120.00147 * 0.02562 * 18 17 15 20 20 C 1.37880 * 120.00067 * 179.97438 * 18 17 15 21 21 N 1.31519 * 119.99588 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00296 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46548 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46742 * 120.00209 * 22 20 18 25 25 H 1.48495 * 109.47408 * 240.00642 * 22 20 18 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 28 28 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 29 29 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 30 30 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 31 31 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 33 33 H 1.09002 * 109.47103 * 300.00247 * 6 5 3 34 34 H 1.08996 * 109.47747 * 179.97438 * 6 5 3 35 35 H 1.08996 * 109.47407 * 180.02562 * 7 6 5 36 36 H 1.09002 * 109.47596 * 60.00070 * 7 6 5 37 37 H 1.09002 * 109.47097 * 299.99925 * 8 7 6 38 38 H 1.08998 * 109.47844 * 180.02562 * 8 7 6 39 39 H 1.08993 * 109.47199 * 300.00243 * 12 11 9 40 40 H 1.08997 * 109.47063 * 60.00040 * 12 11 9 41 41 H 1.09000 * 109.47004 * 89.99676 * 16 15 13 42 42 H 1.09002 * 109.47000 * 209.99656 * 16 15 13 43 43 H 1.09000 * 109.46787 * 329.99671 * 16 15 13 44 44 H 1.09000 * 109.47524 * 210.00152 * 17 15 13 45 45 H 1.09003 * 109.47391 * 330.00184 * 17 15 13 46 46 H 0.97003 * 119.99555 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1457 3.5688 -1.3077 7 6 3.6705 3.5701 -1.1823 8 6 4.0754 2.8862 0.1251 9 6 3.5649 1.4439 0.1254 10 1 3.8528 0.9568 1.0570 11 8 4.1342 0.7368 -0.9781 12 6 5.3740 0.0925 -0.6784 13 6 5.8809 -0.6178 -1.9070 14 8 5.2436 -0.5760 -2.9379 15 7 7.0431 -1.2986 -1.8603 16 6 7.8134 -1.3486 -0.6151 17 6 7.5362 -1.9887 -3.0548 18 6 8.4078 -1.0526 -3.8519 19 1 8.5778 -0.0448 -3.5033 20 6 8.9891 -1.4834 -5.0256 21 7 8.7825 -2.7110 -5.4498 22 14 10.0690 -0.3230 -6.0140 23 1 10.1412 0.9916 -5.3269 24 1 11.4340 -0.8959 -6.1306 25 1 9.4904 -0.1423 -7.3696 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0699 1.5874 -2.1492 32 1 0.5490 2.1252 -1.3971 33 1 1.7114 4.1081 -0.4659 34 1 1.8578 4.0559 -2.2393 35 1 4.0342 4.5977 -1.1821 36 1 4.1049 3.0308 -2.0241 37 1 3.6411 3.4255 0.9669 38 1 5.1616 2.8875 0.2148 39 1 6.1039 0.8380 -0.3630 40 1 5.2233 -0.6302 0.1235 41 1 7.4962 -2.2091 -0.0261 42 1 8.8745 -1.4386 -0.8477 43 1 7.6424 -0.4353 -0.0453 44 1 8.1177 -2.8610 -2.7565 45 1 6.6913 -2.3068 -3.6656 46 1 9.1912 -3.0139 -6.2757 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034675081.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:23 Heat of formation + Delta-G solvation = -108.122422 kcal Electronic energy + Delta-G solvation = -23494.701480 eV Core-core repulsion = 20190.460163 eV Total energy + Delta-G solvation = -3304.241317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.80298 -38.66569 -35.98239 -34.70250 -33.93993 -32.60258 -30.23987 -29.18132 -28.40290 -26.79015 -25.47941 -23.90927 -22.63790 -22.34166 -20.70635 -19.59963 -18.60725 -16.61528 -16.46412 -16.29225 -15.80452 -15.28313 -15.06243 -14.62765 -14.38973 -14.22640 -13.98882 -13.35440 -13.28251 -13.01785 -12.70310 -12.44777 -12.29546 -12.18823 -11.92563 -11.82909 -11.67448 -11.52186 -11.30076 -11.18690 -11.04996 -10.85629 -10.69343 -10.57894 -10.45915 -10.31648 -10.13943 -9.91276 -9.59626 -9.29095 -8.79495 -8.42327 -7.63225 -6.02888 -4.07476 3.31060 3.35888 3.39351 3.45312 3.46966 4.30897 4.47374 4.58363 4.68242 4.79671 5.04115 5.10644 5.16252 5.19902 5.28312 5.30551 5.33097 5.40166 5.41026 5.44114 5.52101 5.62569 5.66260 5.70104 5.71990 5.82999 5.90243 5.91482 5.95992 6.11418 6.18421 6.19600 6.21419 6.28209 6.36742 6.41563 6.59326 7.01019 7.33193 7.46183 7.56919 7.94013 8.24797 8.41529 8.92553 9.12735 9.57650 11.05268 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.020909 B = 0.003937 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.844668 B = 7110.315196 C = 7472.748576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.078 4.078 4 H 0.075 0.925 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.091 3.909 10 H 0.057 0.943 11 O -0.345 6.345 12 C 0.045 3.955 13 C 0.505 3.495 14 O -0.520 6.520 15 N -0.603 5.603 16 C 0.082 3.918 17 C 0.246 3.754 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.054 0.946 44 H 0.033 0.967 45 H 0.044 0.956 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 8.705 16.047 21.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.096 4.096 4 H 0.094 0.906 5 C -0.152 4.152 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.178 4.178 9 C 0.032 3.968 10 H 0.075 0.925 11 O -0.263 6.263 12 C -0.035 4.035 13 C 0.290 3.710 14 O -0.395 6.395 15 N -0.338 5.338 16 C -0.062 4.062 17 C 0.128 3.872 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.983 8.580 15.149 21.135 hybrid contribution 0.985 0.613 -0.167 1.171 sum -10.998 9.193 14.982 20.735 Atomic orbital electron populations 1.21812 0.96148 1.01395 1.01526 1.21532 0.95436 0.96126 1.02702 1.21241 0.92973 0.96654 0.98753 0.90629 1.21575 0.99971 0.95482 0.98140 1.21500 0.95864 0.96852 1.01122 1.21437 0.95904 0.99758 0.98364 1.22015 1.00926 0.96242 0.98583 1.22152 0.93553 0.91652 0.89420 0.92517 1.88080 1.35326 1.68195 1.34648 1.22362 0.87701 0.96496 0.96952 1.19939 0.81737 0.80230 0.89075 1.90690 1.56801 1.60080 1.31959 1.48110 1.20637 1.51833 1.13219 1.21653 0.98001 0.99991 0.86532 1.19298 0.95157 0.91827 0.80961 1.21477 1.29049 0.98910 1.07019 0.92416 1.24941 0.96740 0.95286 0.97170 1.69947 1.44434 1.16373 1.22645 0.86438 0.79888 0.80937 0.80137 1.19812 1.20975 1.20838 0.93235 0.92451 0.92971 0.90613 0.92564 0.90412 0.92229 0.92727 0.92210 0.92612 0.90597 0.91493 0.91931 0.91280 0.91383 0.93681 0.90576 0.92719 0.94888 0.93781 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.32 5.19 -26.73 -0.14 -1.46 16 3 C -0.08 -0.83 2.02 -90.62 -0.18 -1.02 16 4 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.11 -1.32 4.81 -26.74 -0.13 -1.45 16 6 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 7 C -0.12 -1.39 5.78 -26.73 -0.15 -1.55 16 8 C -0.14 -1.51 5.63 -26.73 -0.15 -1.66 16 9 C 0.09 1.07 2.35 -26.73 -0.06 1.00 16 10 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16 11 O -0.34 -5.51 7.59 -55.14 -0.42 -5.93 16 12 C 0.05 0.71 4.78 36.01 0.17 0.88 16 13 C 0.51 10.94 7.75 -10.99 -0.09 10.85 16 14 O -0.52 -13.86 16.08 -14.35 -0.23 -14.09 16 15 N -0.60 -13.02 2.86 -182.95 -0.52 -13.54 16 16 C 0.08 1.29 10.24 59.85 0.61 1.90 16 17 C 0.25 6.56 5.16 -5.19 -0.03 6.53 16 18 C -0.53 -15.14 9.39 -34.44 -0.32 -15.46 16 19 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.88 13.29 55.43 0.74 -26.15 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.54 6.57 -51.93 -0.34 0.20 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.08 1.04 7.83 -51.93 -0.41 0.63 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 32 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.68 7.87 -51.93 -0.41 0.27 16 39 H 0.07 0.95 7.13 -51.93 -0.37 0.58 16 40 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 1.22 8.07 -51.93 -0.42 0.80 16 43 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 44 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 45 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -33.61 361.38 -8.77 -42.38 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -8.40 Total: -2.98 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.36 Total: -2.23 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.21 Total: -39.69 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.65 Total: -20.02 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.61 -8.77 -42.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034675081.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.745 kcal (2) G-P(sol) polarization free energy of solvation -33.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds