Wall clock time and date at job start Tue Mar 31 2020 06:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47069 * 2 1 4 4 H 1.09005 * 109.46804 * 304.99605 * 3 2 1 5 5 C 1.52993 * 109.47112 * 64.99835 * 3 2 1 6 6 C 1.52999 * 109.47114 * 180.02562 * 5 3 2 7 7 C 1.53004 * 109.47068 * 300.00037 * 6 5 3 8 8 C 1.53005 * 109.47033 * 59.99720 * 7 6 5 9 9 C 1.52996 * 109.47117 * 300.00262 * 8 7 6 10 10 H 1.08997 * 109.47052 * 299.99515 * 9 8 7 11 11 O 1.42902 * 109.46960 * 179.97438 * 9 8 7 12 12 C 1.42898 * 114.00186 * 89.99675 * 11 9 8 13 13 C 1.50703 * 109.47171 * 180.02562 * 12 11 9 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46505 * 119.99832 * 359.97438 * 15 13 12 17 17 C 1.46496 * 120.00271 * 180.02562 * 15 13 12 18 18 C 1.50699 * 109.47398 * 89.99557 * 17 15 13 19 19 H 1.08003 * 120.00015 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00048 * 180.02562 * 18 17 15 21 21 N 1.31522 * 119.99916 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00086 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47340 * 89.99836 * 22 20 18 24 24 H 1.48500 * 109.47003 * 210.00191 * 22 20 18 25 25 H 1.48498 * 109.47056 * 329.99743 * 22 20 18 26 26 H 1.09000 * 109.47064 * 60.00082 * 1 2 3 27 27 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46757 * 299.99891 * 1 2 3 29 29 H 1.09004 * 109.47398 * 240.00266 * 2 1 3 30 30 H 1.09001 * 109.47445 * 119.99537 * 2 1 3 31 31 H 1.08998 * 109.47525 * 300.00216 * 5 3 2 32 32 H 1.09007 * 109.46969 * 60.00320 * 5 3 2 33 33 H 1.08995 * 109.47430 * 59.99613 * 6 5 3 34 34 H 1.09000 * 109.47352 * 180.02562 * 6 5 3 35 35 H 1.08998 * 109.47139 * 179.97438 * 7 6 5 36 36 H 1.09007 * 109.47298 * 300.00048 * 7 6 5 37 37 H 1.09005 * 109.47087 * 179.97438 * 8 7 6 38 38 H 1.09006 * 109.46672 * 60.00563 * 8 7 6 39 39 H 1.09002 * 109.47259 * 300.00293 * 12 11 9 40 40 H 1.09001 * 109.47074 * 60.00315 * 12 11 9 41 41 H 1.08999 * 109.47333 * 89.99805 * 16 15 13 42 42 H 1.08997 * 109.47024 * 210.00620 * 16 15 13 43 43 H 1.09000 * 109.46875 * 330.00379 * 16 15 13 44 44 H 1.09000 * 109.47082 * 209.99555 * 17 15 13 45 45 H 1.09004 * 109.46754 * 329.99821 * 17 15 13 46 46 H 0.96999 * 119.99664 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 2.1447 3.5693 1.3070 7 6 3.6695 3.5717 1.1810 8 6 4.0743 2.8875 -0.1263 9 6 3.5648 1.4449 -0.1260 10 1 3.9998 0.9062 0.7157 11 8 3.9424 0.8062 -1.3473 12 6 5.2119 0.1524 -1.2931 13 6 5.5074 -0.4826 -2.6274 14 8 4.7091 -0.3854 -3.5353 15 7 6.6582 -1.1595 -2.8116 16 6 7.6222 -1.2775 -1.7147 17 6 6.9457 -1.7764 -4.1089 18 6 7.6794 -0.7914 -4.9820 19 1 7.9091 0.1954 -4.6078 20 6 8.0576 -1.1498 -6.2585 21 7 8.6975 -0.2900 -7.0206 22 14 7.6597 -2.8563 -6.9059 23 1 6.3327 -2.8361 -7.5720 24 1 8.6983 -3.2692 -7.8838 25 1 7.6321 -3.8202 -5.7766 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 0.5490 2.1253 1.3969 32 1 2.0700 1.5876 2.1491 33 1 1.7098 4.1080 0.4652 34 1 1.8567 4.0565 2.2385 35 1 4.0324 4.5995 1.1804 36 1 4.1046 3.0329 2.0228 37 1 5.1607 2.8896 -0.2163 38 1 3.6394 3.4264 -0.9682 39 1 5.9868 0.8824 -1.0589 40 1 5.1919 -0.6166 -0.5208 41 1 7.4020 -2.1720 -1.1321 42 1 8.6302 -1.3487 -2.1231 43 1 7.5514 -0.3993 -1.0729 44 1 7.5639 -2.6618 -3.9611 45 1 6.0105 -2.0624 -4.5903 46 1 8.9632 -0.5421 -7.9188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034675082.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:27 Heat of formation + Delta-G solvation = -105.347518 kcal Electronic energy + Delta-G solvation = -23191.797053 eV Core-core repulsion = 19887.676065 eV Total energy + Delta-G solvation = -3304.120988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.79865 -38.81737 -36.37793 -34.83714 -34.06116 -32.54071 -30.31070 -29.38828 -28.72798 -26.93494 -25.66628 -24.02848 -22.49085 -22.00127 -20.80027 -20.09765 -18.55695 -17.06860 -16.95846 -16.15895 -15.69481 -15.54426 -14.99041 -14.84270 -14.39817 -14.30361 -13.87418 -13.57428 -13.40561 -13.14951 -12.97407 -12.67156 -12.37381 -12.29393 -12.07629 -11.96910 -11.70959 -11.62111 -11.48219 -11.25324 -11.17179 -10.95198 -10.89393 -10.58256 -10.51454 -10.38686 -10.25521 -10.13521 -9.52944 -9.34811 -8.92219 -8.57314 -7.70788 -6.07181 -4.06064 3.24910 3.31290 3.35592 3.37727 3.39988 4.17995 4.41206 4.47499 4.53995 4.74696 4.89166 4.98654 5.07178 5.12240 5.14599 5.22161 5.26020 5.28195 5.31313 5.33467 5.39428 5.52296 5.56354 5.59436 5.62630 5.77852 5.82215 5.85167 5.87382 5.95771 5.98845 6.03047 6.12810 6.16299 6.17558 6.29622 6.37585 6.67580 6.94071 7.22551 7.38551 7.62187 8.22702 8.48363 8.94416 9.00363 9.52880 11.06255 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.024998 B = 0.003577 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.837317 B = 7825.594277 C = 8252.813492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.082 4.082 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.123 4.123 7 C -0.116 4.116 8 C -0.144 4.144 9 C 0.094 3.906 10 H 0.058 0.942 11 O -0.352 6.352 12 C 0.048 3.952 13 C 0.507 3.493 14 O -0.519 6.519 15 N -0.599 5.599 16 C 0.082 3.918 17 C 0.217 3.783 18 C -0.530 4.530 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.266 1.266 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.046 0.954 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.031 0.969 45 H 0.037 0.963 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.907 3.031 21.236 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.098 0.902 5 C -0.150 4.150 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.182 4.182 9 C 0.035 3.965 10 H 0.076 0.924 11 O -0.270 6.270 12 C -0.032 4.032 13 C 0.292 3.708 14 O -0.394 6.394 15 N -0.333 5.333 16 C -0.062 4.062 17 C 0.097 3.903 18 C -0.568 4.568 19 H 0.092 0.908 20 C -0.130 4.130 21 N -0.536 5.536 22 Si 0.704 3.296 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.191 1.191 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.369 3.097 20.385 23.545 hybrid contribution 0.307 -0.733 -0.207 0.821 sum -11.061 2.364 20.178 23.132 Atomic orbital electron populations 1.21802 0.96050 1.01417 1.01580 1.21533 0.95651 0.96049 1.02560 1.21229 0.93521 0.96902 0.98414 0.90227 1.21620 1.00964 0.95454 0.96942 1.21581 0.95779 0.96867 1.01774 1.21493 0.95956 1.00563 0.97329 1.22070 1.01266 0.96410 0.98460 1.22145 0.95097 0.92368 0.86848 0.92423 1.88066 1.34461 1.70691 1.33748 1.22328 0.87369 0.96700 0.96853 1.19970 0.82233 0.79677 0.88873 1.90693 1.47011 1.58310 1.43379 1.47784 1.17680 1.53686 1.14156 1.21687 0.94677 1.00120 0.89723 1.19669 0.96884 0.93659 0.80106 1.21339 1.36229 1.00903 0.98360 0.90765 1.24863 0.94520 0.97258 0.96403 1.69903 1.39544 1.35029 1.09124 0.86835 0.78634 0.84819 0.79316 1.19849 1.21061 1.19058 0.92682 0.92972 0.92903 0.90605 0.92559 0.91259 0.92000 0.91761 0.92031 0.91763 0.92070 0.91705 0.90837 0.90954 0.91193 0.93539 0.90323 0.92365 0.95084 0.94490 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.67 37.16 0.36 -1.05 16 2 C -0.12 -1.31 5.33 -26.73 -0.14 -1.45 16 3 C -0.08 -0.88 1.93 -90.62 -0.17 -1.06 16 4 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 5 C -0.11 -0.92 4.96 -26.73 -0.13 -1.06 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 8 C -0.14 -1.59 5.54 -26.73 -0.15 -1.73 16 9 C 0.09 1.12 2.04 -26.73 -0.05 1.06 16 10 H 0.06 0.61 7.79 -51.93 -0.40 0.20 16 11 O -0.35 -5.78 8.76 -55.14 -0.48 -6.27 16 12 C 0.05 0.74 4.78 36.01 0.17 0.92 16 13 C 0.51 10.86 7.75 -10.98 -0.09 10.78 16 14 O -0.52 -13.70 16.08 -14.35 -0.23 -13.94 16 15 N -0.60 -12.58 2.86 -182.95 -0.52 -13.10 16 16 C 0.08 1.24 10.24 59.85 0.61 1.85 16 17 C 0.22 5.42 4.23 -5.20 -0.02 5.39 16 18 C -0.53 -15.50 9.94 -34.44 -0.34 -15.84 16 19 H 0.07 2.38 8.06 -52.48 -0.42 1.95 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -28.02 13.96 55.43 0.77 -27.25 16 22 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 29 H 0.08 1.03 7.54 -51.93 -0.39 0.64 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.52 6.56 -51.93 -0.34 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.00 7.13 -51.93 -0.37 0.63 16 40 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 43 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16 44 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 45 H 0.04 0.99 6.85 -51.93 -0.36 0.63 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 359.52 15.07 5.42 5.42 Total: -1.00 -35.00 359.52 -8.48 -43.48 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.39 Total: -3.09 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -0.37 Total: -2.42 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.25 Total: -40.35 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.71 Total: -20.20 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.00 -8.48 -43.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034675082.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.865 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds