Wall clock time and date at job start Tue Mar 31 2020 05:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 117.00036 * 2 1 4 4 O 1.20826 * 120.00221 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00064 * 179.97438 * 3 2 1 6 6 C 1.53003 * 109.46971 * 59.99575 * 5 3 2 7 7 C 1.53003 * 109.46835 * 299.99927 * 5 3 2 8 8 C 1.52996 * 109.47278 * 179.97438 * 5 3 2 9 9 H 1.09002 * 109.50628 * 180.02562 * 8 5 3 10 10 C 1.53122 * 109.50172 * 300.19537 * 8 5 3 11 11 C 1.53116 * 109.15965 * 177.59496 * 10 8 5 12 12 C 1.53037 * 109.27900 * 302.34449 * 11 10 8 13 13 N 1.46847 * 109.52174 * 59.18324 * 12 11 10 14 14 C 1.46896 * 110.99671 * 174.16070 * 13 12 11 15 15 C 1.52996 * 109.47256 * 294.20438 * 14 13 12 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.46846 * 111.19486 * 298.25332 * 13 12 11 25 25 H 1.08996 * 109.47072 * 300.00450 * 1 2 3 26 26 H 1.08997 * 109.46936 * 60.00267 * 1 2 3 27 27 H 1.08998 * 109.47281 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46672 * 179.97438 * 6 5 3 29 29 H 1.08990 * 109.47469 * 300.00044 * 6 5 3 30 30 H 1.09003 * 109.46656 * 60.00596 * 6 5 3 31 31 H 1.08999 * 109.47324 * 299.99843 * 7 5 3 32 32 H 1.08997 * 109.47116 * 60.00382 * 7 5 3 33 33 H 1.09004 * 109.46485 * 179.97438 * 7 5 3 34 34 H 1.09001 * 109.52458 * 297.50297 * 10 8 5 35 35 H 1.09001 * 109.52036 * 57.62669 * 10 8 5 36 36 H 1.08995 * 109.50693 * 62.28848 * 11 10 8 37 37 H 1.09006 * 109.50625 * 182.40526 * 11 10 8 38 38 H 1.08997 * 109.46248 * 299.16200 * 12 11 10 39 39 H 1.09002 * 109.46029 * 179.19753 * 12 11 10 40 40 H 1.09004 * 109.46774 * 174.20637 * 14 13 12 41 41 H 1.09000 * 109.47723 * 54.21025 * 14 13 12 42 42 H 1.09004 * 109.47066 * 60.00378 * 15 14 13 43 43 H 1.08994 * 109.47405 * 300.00209 * 15 14 13 44 44 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 45 45 H 1.09005 * 109.46090 * 181.75679 * 24 13 12 46 46 H 1.09002 * 109.46540 * 301.72862 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2749 0.0006 6 6 4.1139 0.5810 -1.2483 7 6 4.1128 0.5816 1.2502 8 6 4.0002 2.7421 -0.0002 9 1 5.0887 2.7997 -0.0002 10 6 3.4495 3.4373 -1.2484 11 6 3.8372 4.9181 -1.2111 12 6 3.2945 5.5503 0.0725 13 7 3.8513 4.8507 1.2375 14 6 3.4618 5.5172 2.4873 15 6 4.1047 6.9042 2.5474 16 6 3.7056 7.5876 3.8300 17 1 3.0586 7.0830 4.5322 18 6 4.1716 8.8548 4.1098 19 7 4.9599 9.4692 3.2549 20 14 3.6832 9.6988 5.7030 21 1 2.7965 8.8018 6.4868 22 1 4.9018 10.0049 6.4948 23 1 2.9636 10.9606 5.3944 24 6 3.4528 3.4374 1.2484 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 5.2024 0.6384 -1.2480 29 1 3.8049 -0.4642 -1.2482 30 1 3.7245 1.0750 -2.1385 31 1 3.7228 1.0759 2.1400 32 1 3.8038 -0.4637 1.2503 33 1 5.2014 0.6383 1.2504 34 1 3.8708 2.9727 -2.1399 35 1 2.3636 3.3444 -1.2679 36 1 4.9230 5.0106 -1.2315 37 1 3.4117 5.4276 -2.0758 38 1 2.2076 5.4698 0.0857 39 1 3.5811 6.6014 0.1089 40 1 3.7997 4.9230 3.3364 41 1 2.3770 5.6176 2.5229 42 1 3.7668 7.4984 1.6984 43 1 5.1894 6.8038 2.5120 44 1 5.2874 10.3608 3.4516 45 1 3.8544 2.9537 2.1389 46 1 2.3651 3.3667 1.2561 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093281088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:56 Heat of formation + Delta-G solvation = -98.413784 kcal Electronic energy + Delta-G solvation = -23854.731076 eV Core-core repulsion = 20550.910757 eV Total energy + Delta-G solvation = -3303.820319 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.23926 -38.77685 -36.61221 -35.84750 -33.50916 -32.24315 -29.97051 -28.89107 -27.90062 -27.64715 -24.83620 -24.06803 -22.83991 -22.41157 -20.48681 -19.70984 -19.29974 -17.36717 -16.52946 -16.42716 -16.23743 -15.27813 -14.63954 -14.40979 -14.20315 -14.10984 -13.98634 -13.54463 -13.46039 -13.36065 -12.63760 -12.52139 -12.42377 -12.27081 -12.13095 -12.07503 -11.93759 -11.56219 -11.20186 -11.07341 -10.96730 -10.90201 -10.86585 -10.52343 -10.41176 -10.15350 -9.95536 -9.80872 -9.64006 -9.20431 -9.02688 -8.27283 -7.49982 -5.94362 -3.96085 2.11381 2.57068 3.34416 3.41543 3.45975 4.25509 4.48259 4.56416 4.60392 4.73178 4.89880 4.97675 4.98757 5.19815 5.27446 5.29956 5.38712 5.41580 5.45328 5.55126 5.56894 5.65003 5.79787 5.84799 5.85924 5.94331 6.00759 6.11719 6.16255 6.19986 6.25566 6.28133 6.42932 6.52204 6.60304 6.68090 6.80259 7.07713 7.64725 7.68677 7.73867 7.90851 8.00640 8.17050 8.51065 9.11522 9.67067 11.17110 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025569 B = 0.003705 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.799555 B = 7556.560027 C = 7916.976018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.465 3.535 4 O -0.488 6.488 5 C -0.047 4.047 6 C -0.142 4.142 7 C -0.144 4.144 8 C -0.063 4.063 9 H 0.090 0.910 10 C -0.129 4.129 11 C -0.112 4.112 12 C 0.056 3.944 13 N -0.536 5.536 14 C 0.065 3.935 15 C 0.028 3.972 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.046 3.954 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.025 0.975 39 H 0.083 0.917 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.024 0.976 44 H 0.259 0.741 45 H 0.064 0.936 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.229 -21.324 -10.315 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.308 3.692 4 O -0.375 6.375 5 C -0.049 4.049 6 C -0.199 4.199 7 C -0.202 4.202 8 C -0.081 4.081 9 H 0.109 0.891 10 C -0.166 4.166 11 C -0.150 4.150 12 C -0.072 4.072 13 N -0.260 5.260 14 C -0.062 4.062 15 C -0.009 4.009 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.082 4.082 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.035 0.965 43 H 0.042 0.958 44 H 0.069 0.931 45 H 0.083 0.917 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.869 -20.841 -10.365 23.596 hybrid contribution -1.377 0.611 0.987 1.801 sum -5.246 -20.230 -9.379 22.908 Atomic orbital electron populations 1.23237 0.76745 1.03423 1.02576 1.86505 1.23060 1.33875 1.84216 1.23897 0.91994 0.81126 0.72178 1.90613 1.67104 1.35731 1.44032 1.20646 0.86495 0.98770 0.98948 1.21907 1.02026 1.00389 0.95548 1.21935 1.02198 1.00364 0.95659 1.21127 1.01086 0.89435 0.96482 0.89143 1.21944 1.02491 0.95953 0.96195 1.21530 1.01444 0.94860 0.97132 1.22067 0.96162 0.99152 0.89837 1.61987 1.59779 1.00846 1.03435 1.22279 0.97026 0.98048 0.88829 1.19099 0.96579 0.88695 0.96547 1.21258 1.29569 1.00468 1.04555 0.92830 1.24991 0.95170 0.97414 0.96773 1.69990 1.33912 1.13836 1.35544 0.86556 0.78283 0.79470 0.83797 1.19815 1.21012 1.21068 1.22388 0.99347 0.90107 0.96380 0.91922 0.92023 0.88317 0.90764 0.91488 0.91804 0.91589 0.91502 0.90618 0.92639 0.90193 0.91460 0.92205 0.95658 0.89866 0.92407 0.96477 0.96474 0.95750 0.93128 0.91730 0.93068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.84 10.37 -39.27 -0.41 -4.25 16 3 C 0.47 5.76 5.96 36.00 0.21 5.98 16 4 O -0.49 -7.45 11.09 -18.75 -0.21 -7.66 16 5 C -0.05 -0.50 0.53 -155.66 -0.08 -0.59 16 6 C -0.14 -1.18 8.06 37.16 0.30 -0.88 16 7 C -0.14 -1.36 8.05 37.16 0.30 -1.06 16 8 C -0.06 -0.82 1.68 -90.54 -0.15 -0.98 16 9 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 10 C -0.13 -1.73 4.59 -26.61 -0.12 -1.85 16 11 C -0.11 -1.69 6.09 -26.65 -0.16 -1.85 16 12 C 0.06 1.05 5.29 -3.83 -0.02 1.03 16 13 N -0.54 -10.52 4.66 -234.67 -1.09 -11.61 16 14 C 0.06 1.47 4.90 -3.83 -0.02 1.46 16 15 C 0.03 0.76 4.90 -27.88 -0.14 0.63 16 16 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.43 13.29 55.43 0.74 -26.69 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 21 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 C 0.05 0.75 4.08 -3.83 -0.02 0.74 16 25 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.50 8.11 -51.93 -0.42 0.08 16 30 H 0.06 0.54 6.49 -51.93 -0.34 0.21 16 31 H 0.07 0.69 6.45 -51.93 -0.34 0.36 16 32 H 0.07 0.55 8.11 -51.93 -0.42 0.12 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.05 0.63 6.58 -51.93 -0.34 0.29 16 35 H 0.08 1.20 5.46 -51.93 -0.28 0.92 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.08 1.72 6.21 -51.93 -0.32 1.40 16 40 H 0.06 1.29 7.99 -51.93 -0.41 0.87 16 41 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 42 H 0.02 0.49 6.43 -51.93 -0.33 0.15 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.06 1.02 6.36 -51.93 -0.33 0.69 16 46 H 0.05 0.93 5.50 -51.93 -0.29 0.64 16 LS Contribution 348.79 15.07 5.26 5.26 Total: -1.00 -32.50 348.79 -7.99 -40.49 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -8.02 Total: -2.70 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.76 Total: -9.95 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.36 Total: -38.30 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: -0.62 Total: -11.91 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.50 -7.99 -40.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093281088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.921 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds