Wall clock time and date at job start Tue Mar 31 2020 05:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47064 * 2 1 4 4 C 1.52994 * 109.47310 * 120.00084 * 2 1 3 5 5 N 1.46502 * 109.46742 * 65.00306 * 4 2 1 6 6 C 1.46497 * 119.99802 * 269.99908 * 5 4 2 7 7 C 1.50703 * 109.47294 * 270.00087 * 6 5 4 8 8 H 1.07997 * 119.99896 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00398 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99894 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00160 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47460 * 59.99574 * 11 9 7 13 13 H 1.48504 * 109.47263 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47079 * 299.99356 * 11 9 7 15 15 C 1.34777 * 119.99954 * 90.00079 * 5 4 2 16 16 O 1.21282 * 119.99754 * 179.97438 * 15 5 4 17 17 C 1.50690 * 120.00351 * 0.02562 * 15 5 4 18 18 C 1.53000 * 109.47514 * 179.97438 * 17 15 5 19 19 H 1.09000 * 109.48930 * 304.97142 * 18 17 15 20 20 C 1.53090 * 109.48304 * 184.93947 * 18 17 15 21 21 C 1.53176 * 109.16668 * 182.40914 * 20 18 17 22 22 C 1.53181 * 109.03564 * 56.97896 * 21 20 18 23 23 C 1.53096 * 109.16280 * 303.02405 * 22 21 20 24 24 O 1.42902 * 109.47734 * 65.00001 * 18 17 15 25 25 H 1.09004 * 109.47302 * 59.99815 * 1 2 3 26 26 H 1.09005 * 109.47078 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47246 * 299.99587 * 1 2 3 28 28 H 1.09007 * 109.47363 * 240.00737 * 2 1 3 29 29 H 1.08997 * 109.46875 * 179.97438 * 3 2 1 30 30 H 1.08997 * 109.47548 * 300.00418 * 3 2 1 31 31 H 1.09007 * 109.46429 * 60.00165 * 3 2 1 32 32 H 1.08997 * 109.47086 * 305.00394 * 4 2 1 33 33 H 1.08998 * 109.47342 * 185.00080 * 4 2 1 34 34 H 1.08994 * 109.47452 * 30.00238 * 6 5 4 35 35 H 1.09004 * 109.47105 * 150.00530 * 6 5 4 36 36 H 0.96998 * 120.00517 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47550 * 59.99417 * 17 15 5 38 38 H 1.09004 * 109.46856 * 299.99907 * 17 15 5 39 39 H 1.09005 * 109.52564 * 302.31806 * 20 18 17 40 40 H 1.09001 * 109.51975 * 62.50094 * 20 18 17 41 41 H 1.09005 * 109.54225 * 297.11519 * 21 20 18 42 42 H 1.08991 * 109.54673 * 176.84737 * 21 20 18 43 43 H 1.08998 * 109.52547 * 183.11606 * 22 21 20 44 44 H 1.09004 * 109.52249 * 62.92485 * 22 21 20 45 45 H 1.08996 * 109.47593 * 177.59033 * 23 22 21 46 46 H 1.09001 * 109.48107 * 297.61277 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1904 6 6 0.3746 -2.5660 1.7610 7 6 0.5717 -2.9410 3.2073 8 1 1.5509 -2.8647 3.6563 9 6 -0.4980 -3.3824 3.9570 10 7 -1.6904 -3.4757 3.4101 11 14 -0.2538 -3.8465 5.7498 12 1 0.2498 -2.6692 6.5018 13 1 -1.5492 -4.2857 6.3283 14 1 0.7318 -4.9532 5.8448 15 6 2.4716 -3.0330 0.6113 16 8 2.1509 -4.2016 0.5631 17 6 3.7863 -2.5876 0.0248 18 6 4.5173 -3.7955 -0.5646 19 1 4.6216 -4.5658 0.1995 20 6 5.9044 -3.3662 -1.0496 21 6 6.6061 -4.5665 -1.6924 22 6 5.7334 -5.1049 -2.8303 23 6 4.3528 -5.4671 -2.2765 24 8 3.7688 -4.3147 -1.6657 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5137 -0.8901 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9565 -0.8899 31 1 1.6766 1.9563 0.8901 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6443 1.2951 34 1 -0.3484 -1.7533 1.6917 35 1 0.0043 -3.4298 1.2089 36 1 -2.4430 -3.7859 3.9375 37 1 4.3992 -2.1383 0.8062 38 1 3.6039 -1.8541 -0.7606 39 1 5.8024 -2.5675 -1.7843 40 1 6.4923 -3.0109 -0.2032 41 1 6.7528 -5.3463 -0.9450 42 1 7.5718 -4.2544 -2.0899 43 1 6.1989 -5.9931 -3.2575 44 1 5.6278 -4.3413 -3.6010 45 1 3.7137 -5.8106 -3.0899 46 1 4.4550 -6.2594 -1.5350 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817101.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:51 Heat of formation + Delta-G solvation = -109.402780 kcal Electronic energy + Delta-G solvation = -23788.937892 eV Core-core repulsion = 20484.641054 eV Total energy + Delta-G solvation = -3304.296838 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67235 -38.54631 -36.20916 -33.56229 -33.46749 -32.62916 -32.12648 -28.77906 -27.14728 -26.76343 -25.33053 -24.34050 -23.12487 -21.72204 -20.23796 -20.08811 -18.16042 -16.52466 -16.24431 -16.18030 -15.85664 -15.36534 -14.55253 -14.49625 -14.43730 -14.34893 -13.96573 -13.38195 -13.28094 -12.80420 -12.61378 -12.31949 -12.17757 -12.08294 -11.99804 -11.54143 -11.47057 -11.28450 -11.17109 -11.07279 -10.92810 -10.85693 -10.70759 -10.62092 -10.37971 -10.21709 -10.14944 -10.04916 -9.52113 -9.22427 -8.69471 -8.35838 -7.49357 -5.97672 -4.01803 3.34752 3.39174 3.41796 3.60388 3.98044 4.03821 4.49364 4.73552 4.77079 4.82626 4.95537 5.13809 5.21976 5.24786 5.30713 5.34096 5.36224 5.46684 5.51801 5.65600 5.68913 5.76282 5.79783 5.80739 5.88303 5.90525 5.92562 5.95313 6.05891 6.12020 6.15767 6.24052 6.25682 6.31513 6.37893 6.64716 6.77084 7.21087 7.49822 7.56110 7.68250 7.99877 8.32970 8.57544 8.98638 9.26884 9.62966 11.10077 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.005194 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.112344 B = 5389.348067 C = 6611.708675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.599 5.599 6 C 0.244 3.756 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.507 3.493 16 O -0.531 6.531 17 C -0.136 4.136 18 C 0.108 3.892 19 H 0.064 0.936 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.156 4.156 23 C 0.062 3.938 24 O -0.363 6.363 25 H 0.044 0.956 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.039 0.961 35 H 0.040 0.960 36 H 0.263 0.737 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.089 0.911 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.327 5.406 -10.527 18.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.008 4.008 5 N -0.330 5.330 6 C 0.125 3.875 7 C -0.563 4.563 8 H 0.073 0.927 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.293 3.707 16 O -0.408 6.408 17 C -0.176 4.176 18 C 0.049 3.951 19 H 0.082 0.918 20 C -0.189 4.189 21 C -0.159 4.159 22 C -0.194 4.194 23 C -0.015 4.015 24 O -0.281 6.281 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.107 0.893 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.756 4.804 -10.553 17.990 hybrid contribution 0.357 -0.280 1.122 1.210 sum 14.112 4.523 -9.431 17.566 Atomic orbital electron populations 1.21918 0.94672 1.03092 1.00822 1.21595 0.97102 0.95687 0.99043 1.21781 1.00457 0.96139 1.01698 1.21504 0.98831 0.82622 0.97803 1.48187 1.21911 1.06187 1.56763 1.19345 0.78877 0.96279 0.93046 1.21436 0.94917 1.44252 0.95703 0.92705 1.24916 0.95096 0.95530 0.98539 1.69922 0.99792 1.47126 1.36609 0.86601 0.77299 0.78899 0.84846 1.20332 1.21231 1.20292 1.20149 0.85520 0.86225 0.78757 1.90671 1.74926 1.17466 1.57704 1.21795 0.96330 0.98392 1.01049 1.21762 0.89251 0.95206 0.88845 0.91757 1.22245 0.96817 0.98567 1.01238 1.21569 0.98416 0.97963 0.97948 1.22220 0.97025 1.01559 0.98609 1.22481 0.93412 0.88488 0.97088 1.88012 1.48494 1.44784 1.46833 0.93728 0.91232 0.92604 0.91512 0.92985 0.92916 0.92559 0.90142 0.91894 0.94323 0.94171 0.92774 0.88444 0.88946 0.91128 0.90959 0.91822 0.91757 0.91275 0.91286 0.89265 0.93297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 8.18 37.16 0.30 -2.04 16 2 C -0.11 -1.63 3.12 -90.62 -0.28 -1.91 16 3 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 4 C 0.12 1.92 4.70 -4.04 -0.02 1.90 16 5 N -0.60 -12.80 2.28 -175.07 -0.40 -13.20 16 6 C 0.24 6.42 4.23 -5.19 -0.02 6.40 16 7 C -0.52 -15.03 9.39 -34.44 -0.32 -15.35 16 8 H 0.05 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 11 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 C 0.51 10.86 7.55 -10.99 -0.08 10.77 16 16 O -0.53 -13.86 15.00 -8.84 -0.13 -14.00 16 17 C -0.14 -2.09 3.96 -27.89 -0.11 -2.20 16 18 C 0.11 1.62 2.19 -26.68 -0.06 1.56 16 19 H 0.06 1.08 7.96 -51.93 -0.41 0.66 16 20 C -0.15 -1.66 5.42 -26.59 -0.14 -1.80 16 21 C -0.12 -1.20 6.03 -26.55 -0.16 -1.36 16 22 C -0.16 -1.59 6.14 -26.59 -0.16 -1.75 16 23 C 0.06 0.82 6.84 37.21 0.25 1.08 16 24 O -0.36 -6.12 9.64 -49.63 -0.48 -6.60 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.32 5.89 -51.93 -0.31 1.01 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.96 7.30 -51.93 -0.38 0.59 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 1.39 8.07 -51.93 -0.42 0.97 16 33 H 0.06 0.86 6.44 -51.93 -0.33 0.53 16 34 H 0.04 1.02 5.98 -51.93 -0.31 0.71 16 35 H 0.04 1.22 7.42 -51.93 -0.39 0.83 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.10 1.26 7.40 -51.93 -0.38 0.87 16 38 H 0.09 1.28 7.26 -51.93 -0.38 0.90 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 359.17 15.07 5.41 5.41 Total: -1.00 -33.60 359.17 -8.80 -42.39 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -8.35 Total: -0.67 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.56 Total: -4.28 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.34 Total: -39.36 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.61 Total: -20.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.60 -8.80 -42.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817101.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.009 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds