Wall clock time and date at job start Tue Mar 31 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47082 * 2 1 4 4 C 1.52997 * 109.47533 * 120.00085 * 2 1 3 5 5 N 1.46503 * 109.47071 * 63.45083 * 4 2 1 6 6 C 1.46506 * 119.99487 * 264.63508 * 5 4 2 7 7 C 1.50705 * 109.46853 * 269.72137 * 6 5 4 8 8 H 1.08001 * 119.99929 * 0.02562 * 7 6 5 9 9 C 1.37866 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.31511 * 120.00397 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00039 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47166 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47439 * 120.00101 * 11 9 7 14 14 H 1.48504 * 109.47180 * 240.00471 * 11 9 7 15 15 C 1.34773 * 120.00405 * 84.34987 * 5 4 2 16 16 O 1.21279 * 119.99878 * 175.53987 * 15 5 4 17 17 C 1.50693 * 120.00144 * 355.54810 * 15 5 4 18 18 C 1.52997 * 109.47300 * 184.80342 * 17 15 5 19 19 H 1.08994 * 109.48409 * 55.02262 * 18 17 15 20 20 C 1.53094 * 109.48095 * 175.05509 * 18 17 15 21 21 C 1.53182 * 109.16292 * 177.58891 * 20 18 17 22 22 C 1.53173 * 109.03989 * 303.02116 * 21 20 18 23 23 C 1.53095 * 109.16178 * 56.97586 * 22 21 20 24 24 O 1.42898 * 109.41686 * 302.39632 * 23 22 21 25 25 H 1.09005 * 109.47243 * 180.81399 * 1 2 3 26 26 H 1.09008 * 109.46923 * 300.80575 * 1 2 3 27 27 H 1.08994 * 109.47597 * 60.80580 * 1 2 3 28 28 H 1.09003 * 109.46802 * 240.00390 * 2 1 3 29 29 H 1.09003 * 109.47614 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47259 * 300.00618 * 3 2 1 31 31 H 1.09003 * 109.46983 * 60.00501 * 3 2 1 32 32 H 1.08995 * 109.47602 * 303.44908 * 4 2 1 33 33 H 1.09008 * 109.47020 * 183.44484 * 4 2 1 34 34 H 1.09000 * 109.47171 * 29.72114 * 6 5 4 35 35 H 1.08995 * 109.46974 * 149.72161 * 6 5 4 36 36 H 0.97009 * 120.00436 * 179.97438 * 10 9 7 37 37 H 1.09003 * 109.46987 * 304.80271 * 17 15 5 38 38 H 1.09003 * 109.47415 * 64.80126 * 17 15 5 39 39 H 1.08999 * 109.52651 * 297.49974 * 20 18 17 40 40 H 1.09004 * 109.51930 * 57.68820 * 20 18 17 41 41 H 1.09005 * 109.54297 * 183.14943 * 21 20 18 42 42 H 1.09006 * 109.54015 * 62.88824 * 21 20 18 43 43 H 1.09000 * 109.52272 * 297.07738 * 22 21 20 44 44 H 1.09001 * 109.57656 * 176.91271 * 22 21 20 45 45 H 1.09001 * 109.48409 * 182.40465 * 23 22 21 46 46 H 1.09005 * 109.48652 * 62.38091 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6208 -2.1244 1.2083 6 6 0.3998 -2.5444 1.9004 7 6 0.7376 -2.9549 3.3106 8 1 1.7595 -2.9071 3.6568 9 6 -0.2580 -3.3902 4.1591 10 7 -1.5025 -3.4478 3.7378 11 14 0.1607 -3.8996 5.9068 12 1 1.6204 -3.7439 6.1315 13 1 -0.5813 -3.0405 6.8642 14 1 -0.2239 -5.3189 6.1144 15 6 2.3552 -3.0277 0.5293 16 8 2.0539 -4.2020 0.5621 17 6 3.5509 -2.5787 -0.2704 18 6 4.1310 -3.7711 -1.0336 19 1 3.3500 -4.2291 -1.6405 20 6 5.2678 -3.2926 -1.9406 21 6 5.8827 -4.4997 -2.6555 22 6 6.3606 -5.5104 -1.6085 23 6 5.1816 -5.9032 -0.7143 24 8 4.6371 -4.7313 -0.1042 25 1 -0.3634 -1.0276 0.0146 26 1 -0.3633 0.5263 0.8827 27 1 -0.3634 0.5012 -0.8970 28 1 1.8932 -0.5138 -0.8901 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6272 -0.2444 2.1381 33 1 3.1284 -0.6680 1.2805 34 1 -0.3084 -1.7161 1.9228 35 1 -0.0448 -3.3884 1.3730 36 1 -2.2030 -3.7545 4.3347 37 1 3.2459 -1.8078 -0.9781 38 1 4.3075 -2.1752 0.4026 39 1 4.8752 -2.5932 -2.6787 40 1 6.0304 -2.7983 -1.3387 41 1 6.7289 -4.1733 -3.2602 42 1 5.1332 -4.9649 -3.2959 43 1 7.1453 -5.0610 -0.9999 44 1 6.7501 -6.3974 -2.1082 45 1 5.5251 -6.5898 0.0595 46 1 4.4143 -6.3892 -1.3170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094817102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:55 Heat of formation + Delta-G solvation = -109.117672 kcal Electronic energy + Delta-G solvation = -23805.421575 eV Core-core repulsion = 20501.137100 eV Total energy + Delta-G solvation = -3304.284475 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.67501 -38.54829 -36.21241 -33.57720 -33.47730 -32.59681 -32.11829 -28.74589 -27.12476 -26.82248 -25.34237 -24.33272 -23.12596 -21.72836 -20.23039 -20.13186 -18.20060 -16.52156 -16.21552 -16.12116 -15.85042 -15.39449 -14.51231 -14.49334 -14.47847 -14.31318 -13.94892 -13.41324 -13.30899 -12.83137 -12.57332 -12.34478 -12.16468 -12.03075 -12.01424 -11.68528 -11.51168 -11.22916 -11.17382 -11.08740 -10.88568 -10.86713 -10.70732 -10.63331 -10.37072 -10.28340 -10.13840 -10.03190 -9.48097 -9.21195 -8.68410 -8.35254 -7.49837 -5.96293 -3.99615 3.34973 3.42477 3.47225 3.59447 3.99057 4.05737 4.52015 4.73775 4.77193 4.82691 4.94874 5.07924 5.18643 5.24810 5.27857 5.33499 5.37907 5.48732 5.51730 5.60559 5.69084 5.76918 5.77706 5.80593 5.85103 5.90308 5.92875 5.94828 6.05180 6.12177 6.13322 6.20165 6.23893 6.31477 6.32441 6.59187 6.70787 7.18671 7.51873 7.55004 7.69317 8.01511 8.34520 8.57351 9.01618 9.27508 9.65395 11.11616 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.005553 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.296923 B = 5041.503620 C = 6658.793701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.247 3.753 7 C -0.519 4.519 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.506 3.494 16 O -0.527 6.527 17 C -0.137 4.137 18 C 0.108 3.892 19 H 0.062 0.938 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.157 4.157 23 C 0.062 3.938 24 O -0.359 6.359 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.038 0.962 36 H 0.261 0.739 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.756 5.535 -12.868 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.201 4.201 4 C -0.007 4.007 5 N -0.331 5.331 6 C 0.128 3.872 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.723 3.277 12 H -0.198 1.198 13 H -0.211 1.211 14 H -0.210 1.210 15 C 0.292 3.708 16 O -0.404 6.404 17 C -0.177 4.177 18 C 0.050 3.950 19 H 0.080 0.920 20 C -0.189 4.189 21 C -0.158 4.158 22 C -0.195 4.195 23 C -0.015 4.015 24 O -0.278 6.278 25 H 0.085 0.915 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.108 0.892 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.382 4.875 -12.564 18.301 hybrid contribution 0.208 -0.242 0.742 0.807 sum 12.590 4.633 -11.822 17.881 Atomic orbital electron populations 1.21861 0.94675 1.02898 1.00896 1.21641 0.97068 0.95833 0.99043 1.21781 1.00560 0.96038 1.01744 1.21495 0.98626 0.82800 0.97794 1.48194 1.27270 1.06728 1.50948 1.19294 0.80441 0.96074 0.91430 1.21518 0.94229 1.43463 0.96638 0.92497 1.24914 0.94904 0.95599 0.98740 1.69942 0.99948 1.47753 1.36056 0.86481 0.78444 0.78279 0.84450 1.19825 1.21096 1.20962 1.20159 0.83965 0.86257 0.80420 1.90680 1.69701 1.16819 1.63160 1.21860 0.97824 0.97886 1.00135 1.21746 0.93874 0.89247 0.90152 0.92036 1.22251 0.99162 0.98171 0.99308 1.21567 1.00481 0.96142 0.97659 1.22223 0.99361 0.99581 0.98292 1.22483 0.93991 0.88174 0.96843 1.88061 1.78696 1.28850 1.32153 0.91540 0.92550 0.93672 0.91589 0.92899 0.92919 0.92483 0.89949 0.91992 0.94663 0.94353 0.92940 0.88453 0.88879 0.91009 0.91088 0.91764 0.91871 0.91266 0.91281 0.89220 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.29 37.16 0.31 -1.87 16 2 C -0.12 -1.56 3.00 -90.62 -0.27 -1.83 16 3 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 4 C 0.12 1.92 4.61 -4.04 -0.02 1.90 16 5 N -0.60 -12.77 2.16 -175.06 -0.38 -13.15 16 6 C 0.25 6.49 4.14 -5.19 -0.02 6.47 16 7 C -0.52 -15.10 9.39 -34.44 -0.32 -15.42 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.74 5.46 -17.83 -0.10 1.65 16 10 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 11 Si 0.90 22.49 29.54 -169.99 -5.02 17.47 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 15 C 0.51 10.81 7.52 -10.99 -0.08 10.72 16 16 O -0.53 -13.78 14.99 -10.66 -0.16 -13.94 16 17 C -0.14 -2.11 4.02 -27.89 -0.11 -2.22 16 18 C 0.11 1.62 2.20 -26.68 -0.06 1.56 16 19 H 0.06 0.99 8.03 -51.93 -0.42 0.58 16 20 C -0.15 -1.65 5.42 -26.59 -0.14 -1.79 16 21 C -0.12 -1.19 6.03 -26.55 -0.16 -1.35 16 22 C -0.16 -1.63 6.14 -26.59 -0.16 -1.80 16 23 C 0.06 0.85 6.84 37.21 0.25 1.10 16 24 O -0.36 -6.28 9.53 -51.45 -0.49 -6.77 16 25 H 0.07 1.19 6.26 -51.93 -0.33 0.86 16 26 H 0.06 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.85 6.26 -51.93 -0.32 0.52 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.43 8.03 -51.93 -0.42 1.01 16 33 H 0.06 0.88 6.85 -51.92 -0.36 0.52 16 34 H 0.04 0.93 6.63 -51.93 -0.34 0.58 16 35 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.10 1.21 6.14 -51.93 -0.32 0.89 16 38 H 0.09 1.34 7.55 -51.93 -0.39 0.95 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.26 15.07 5.40 5.40 Total: -1.00 -34.04 358.26 -8.79 -42.83 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -8.32 Total: -1.43 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.55 Total: -4.06 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.36 Total: -39.50 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.65 Total: -20.71 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -8.79 -42.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094817102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.287 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds