Wall clock time and date at job start Tue Mar 31 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.46496 * 119.99619 * 89.99960 * 5 4 2 7 7 C 1.50707 * 109.47188 * 90.00204 * 6 5 4 8 8 H 1.07994 * 119.99863 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99908 * 179.97438 * 7 6 5 10 10 N 1.31513 * 120.00198 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99704 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47008 * 90.00219 * 11 9 7 13 13 H 1.48502 * 109.46830 * 209.99994 * 11 9 7 14 14 H 1.48493 * 109.46948 * 329.99952 * 11 9 7 15 15 C 1.34774 * 120.00261 * 270.00136 * 5 4 2 16 16 O 1.21270 * 120.00172 * 180.02562 * 15 5 4 17 17 C 1.50706 * 119.99638 * 359.97438 * 15 5 4 18 18 C 1.53002 * 109.46771 * 180.02562 * 17 15 5 19 19 C 1.53002 * 109.46815 * 179.97438 * 18 17 15 20 20 H 1.08997 * 109.82489 * 305.56193 * 19 18 17 21 21 C 1.54383 * 109.82638 * 184.58561 * 19 18 17 22 22 C 1.55312 * 102.24930 * 219.13056 * 21 19 18 23 23 C 1.54940 * 100.94196 * 34.13657 * 22 21 19 24 24 O 1.43241 * 109.83014 * 66.45333 * 19 18 17 25 25 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 26 26 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 27 27 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 29 29 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 30 30 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 31 31 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 33 33 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 34 34 H 1.09006 * 109.47349 * 209.99918 * 6 5 4 35 35 H 1.09003 * 109.47665 * 330.00083 * 6 5 4 36 36 H 0.97004 * 120.00297 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.46731 * 300.00166 * 17 15 5 38 38 H 1.08993 * 109.47109 * 60.00140 * 17 15 5 39 39 H 1.08996 * 109.47121 * 299.99656 * 18 17 15 40 40 H 1.08996 * 109.46958 * 60.00229 * 18 17 15 41 41 H 1.09001 * 110.85066 * 337.31908 * 21 19 18 42 42 H 1.09000 * 110.84622 * 100.94293 * 21 19 18 43 43 H 1.09003 * 111.12227 * 276.21574 * 22 21 19 44 44 H 1.09001 * 111.16136 * 152.07136 * 22 21 19 45 45 H 1.09005 * 110.30680 * 204.64381 * 23 22 21 46 46 H 1.08995 * 110.31324 * 82.46918 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.3343 0.2339 1.7611 7 6 4.6222 -0.0769 3.2074 8 1 4.2232 -0.9744 3.6566 9 6 5.3949 0.7844 3.9570 10 7 5.8811 1.8770 3.4099 11 14 5.7511 0.3994 5.7500 12 1 6.9960 -0.4045 5.8457 13 1 5.9213 1.6673 6.5041 14 1 4.6191 -0.3705 6.3252 15 6 4.0758 -1.8987 0.6113 16 8 5.2844 -1.9860 0.5631 17 6 3.2175 -2.9898 0.0247 18 6 4.1128 -4.0815 -0.5648 19 6 3.2414 -5.1895 -1.1598 20 1 2.5421 -5.5540 -0.4074 21 6 4.1333 -6.3488 -1.6538 22 6 3.4271 -6.7695 -2.9715 23 6 2.9055 -5.4004 -3.4757 24 8 2.5202 -4.6862 -2.2904 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6054 -1.7199 1.2950 33 1 1.7517 -0.1584 2.1369 34 1 5.2722 0.2952 1.2090 35 1 3.8091 1.1865 1.6918 36 1 6.4244 2.4832 3.9374 37 1 2.5896 -3.4178 0.8062 38 1 2.5868 -2.5733 -0.7606 39 1 4.7409 -3.6537 -1.3462 40 1 4.7431 -4.4979 0.2209 41 1 5.1474 -6.0011 -1.8510 42 1 4.1360 -7.1691 -0.9360 43 1 2.6032 -7.4553 -2.7739 44 1 4.1359 -7.2037 -3.6765 45 1 2.0445 -5.5410 -4.1292 46 1 3.6962 -4.8642 -4.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010152.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:35 Heat of formation + Delta-G solvation = -109.440838 kcal Electronic energy + Delta-G solvation = -23367.158986 eV Core-core repulsion = 20062.860498 eV Total energy + Delta-G solvation = -3304.298488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72117 -38.94751 -36.29036 -33.65858 -33.10073 -32.25452 -32.13695 -28.98905 -27.40748 -26.74939 -25.39763 -24.29717 -22.40589 -21.67741 -20.66877 -20.09226 -18.12174 -17.05502 -16.52649 -16.34963 -15.73779 -15.47770 -14.89566 -14.45353 -14.34258 -14.06568 -13.82924 -13.50206 -13.28472 -12.97138 -12.52128 -12.29026 -12.02318 -11.95405 -11.90829 -11.73228 -11.48687 -11.37346 -11.27525 -10.99093 -10.95948 -10.88615 -10.77034 -10.70464 -10.59061 -10.30355 -10.18222 -10.06101 -9.54082 -9.52000 -8.74675 -8.37263 -7.52256 -5.99079 -4.03152 3.33687 3.39438 3.41514 3.57878 3.74351 4.04734 4.35171 4.48572 4.65051 4.72550 5.00990 5.07600 5.15608 5.19988 5.24991 5.34407 5.36127 5.42857 5.51766 5.53839 5.57318 5.65845 5.71552 5.77101 5.83939 5.91415 5.95960 5.98685 6.01377 6.17836 6.25269 6.27244 6.34680 6.39620 6.47432 6.66451 6.77026 6.99259 7.19746 7.52510 7.66222 7.98300 8.31403 8.55412 8.97163 9.22472 9.61693 11.08733 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016256 B = 0.004450 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.070212 B = 6291.301676 C = 7497.310913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.117 3.883 5 N -0.596 5.596 6 C 0.242 3.758 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.060 3.940 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.275 1.275 15 C 0.504 3.496 16 O -0.547 6.547 17 C -0.136 4.136 18 C -0.111 4.111 19 C 0.080 3.920 20 H 0.079 0.921 21 C -0.152 4.152 22 C -0.157 4.157 23 C 0.050 3.950 24 O -0.377 6.377 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.434 -12.694 -11.585 20.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.205 4.205 4 C -0.008 4.008 5 N -0.327 5.327 6 C 0.123 3.877 7 C -0.563 4.563 8 H 0.074 0.926 9 C -0.141 4.141 10 N -0.535 5.535 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.200 1.200 15 C 0.291 3.709 16 O -0.425 6.425 17 C -0.176 4.176 18 C -0.149 4.149 19 C 0.022 3.978 20 H 0.097 0.903 21 C -0.190 4.190 22 C -0.195 4.195 23 C -0.027 4.027 24 O -0.296 6.296 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.819 -12.378 -11.534 19.562 hybrid contribution 0.341 -0.264 1.065 1.149 sum -9.479 -12.643 -10.469 18.955 Atomic orbital electron populations 1.21770 0.95268 1.01372 1.01627 1.21580 0.95221 0.97526 0.99033 1.21925 1.02616 0.95131 1.00848 1.21518 0.81444 1.00023 0.97786 1.48203 1.06015 1.22121 1.56366 1.19371 0.90602 0.84624 0.93141 1.21472 1.31817 1.07315 0.95668 0.92610 1.24922 0.95589 0.95011 0.98594 1.69933 1.34941 1.12034 1.36564 0.86533 0.78756 0.77606 0.84721 1.20630 1.21197 1.19977 1.20433 0.88673 0.83140 0.78693 1.90643 1.14843 1.78224 1.58835 1.21654 0.99014 0.95855 1.01079 1.21709 0.97321 0.94942 1.00954 1.22848 0.93098 0.93078 0.88759 0.90279 1.23188 1.00189 0.98353 0.97225 1.23262 1.00721 0.98023 0.97481 1.23345 0.99701 0.90987 0.88662 1.88443 1.64611 1.60563 1.16021 0.92607 0.92925 0.92878 0.91469 0.93714 0.92598 0.91322 0.91693 0.90179 0.94217 0.94256 0.92822 0.89946 0.89105 0.90900 0.90307 0.90098 0.90060 0.90557 0.90131 0.90038 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.19 37.15 0.34 -1.31 16 2 C -0.11 -1.66 3.12 -90.62 -0.28 -1.95 16 3 C -0.15 -2.36 8.18 37.16 0.30 -2.06 16 4 C 0.12 1.97 4.70 -4.04 -0.02 1.95 16 5 N -0.60 -12.84 2.28 -175.05 -0.40 -13.24 16 6 C 0.24 6.38 4.23 -5.19 -0.02 6.36 16 7 C -0.52 -15.08 9.39 -34.44 -0.32 -15.40 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 11 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 15 C 0.50 10.78 7.67 -10.98 -0.08 10.69 16 16 O -0.55 -14.10 15.56 5.57 0.09 -14.01 16 17 C -0.14 -2.15 4.16 -27.88 -0.12 -2.26 16 18 C -0.11 -1.61 4.07 -26.73 -0.11 -1.72 16 19 C 0.08 0.92 3.52 -26.01 -0.09 0.83 16 20 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.15 -1.41 6.54 -24.78 -0.16 -1.58 16 22 C -0.16 -1.24 7.16 -24.48 -0.18 -1.41 16 23 C 0.05 0.47 7.78 38.18 0.30 0.77 16 24 O -0.38 -4.75 10.64 -35.23 -0.37 -5.12 16 25 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.00 7.30 -51.92 -0.38 0.62 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.89 8.14 -51.92 -0.42 0.47 16 31 H 0.07 1.30 5.89 -51.93 -0.31 1.00 16 32 H 0.06 0.94 6.44 -51.93 -0.33 0.61 16 33 H 0.08 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.04 1.20 7.42 -51.93 -0.39 0.81 16 35 H 0.04 1.04 5.98 -51.93 -0.31 0.73 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.08 1.16 7.40 -51.93 -0.38 0.78 16 38 H 0.09 1.36 7.00 -51.93 -0.36 0.99 16 39 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 40 H 0.08 1.19 8.10 -51.93 -0.42 0.77 16 41 H 0.08 0.78 7.85 -51.93 -0.41 0.37 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -33.22 363.05 -8.37 -41.58 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.33 Total: -0.21 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -0.54 Total: -5.44 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.34 Total: -39.40 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.29 Total: -19.13 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.22 -8.37 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010152.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.857 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds