Wall clock time and date at job start Tue Mar 31 2020 05:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.46905 * 2 1 4 4 C 1.53002 * 109.46825 * 120.00098 * 2 1 3 5 5 N 1.46508 * 109.46798 * 174.11075 * 4 2 1 6 6 C 1.46500 * 119.99627 * 276.68610 * 5 4 2 7 7 C 1.50702 * 109.46728 * 269.99527 * 6 5 4 8 8 H 1.08000 * 120.00206 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99733 * 180.02562 * 7 6 5 10 10 N 1.31519 * 120.00359 * 0.02562 * 9 7 6 11 11 Si 1.86808 * 120.00265 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.46692 * 359.97438 * 11 9 7 13 13 H 1.48492 * 109.47336 * 119.99894 * 11 9 7 14 14 H 1.48498 * 109.47030 * 240.00283 * 11 9 7 15 15 C 1.34777 * 119.99971 * 96.68503 * 5 4 2 16 16 O 1.21276 * 119.99793 * 185.40386 * 15 5 4 17 17 C 1.50702 * 120.00121 * 5.40274 * 15 5 4 18 18 C 1.52998 * 109.46912 * 174.69498 * 17 15 5 19 19 C 1.53005 * 109.46639 * 180.02562 * 18 17 15 20 20 H 1.09001 * 110.33671 * 52.74699 * 19 18 17 21 21 C 1.54478 * 110.36800 * 174.99999 * 19 18 17 22 22 C 1.54516 * 104.05916 * 142.80918 * 21 19 18 23 23 C 1.54478 * 104.18656 * 359.92808 * 22 21 19 24 24 O 1.44427 * 110.37013 * 290.38063 * 19 18 17 25 25 H 1.08991 * 109.47251 * 299.99796 * 1 2 3 26 26 H 1.08994 * 109.47088 * 60.00291 * 1 2 3 27 27 H 1.09005 * 109.46628 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46770 * 239.99898 * 2 1 3 29 29 H 1.08997 * 109.47355 * 184.70514 * 3 2 1 30 30 H 1.09002 * 109.47411 * 304.70848 * 3 2 1 31 31 H 1.08997 * 109.47475 * 64.70923 * 3 2 1 32 32 H 1.08992 * 109.47443 * 54.11138 * 4 2 1 33 33 H 1.09002 * 109.46945 * 294.10585 * 4 2 1 34 34 H 1.08991 * 109.47549 * 29.99571 * 6 5 4 35 35 H 1.08996 * 109.46794 * 150.00515 * 6 5 4 36 36 H 0.96996 * 120.00546 * 179.97438 * 10 9 7 37 37 H 1.09005 * 109.46921 * 54.69464 * 17 15 5 38 38 H 1.08998 * 109.47146 * 294.69687 * 17 15 5 39 39 H 1.08997 * 109.47074 * 60.00136 * 18 17 15 40 40 H 1.09000 * 109.46904 * 299.99809 * 18 17 15 41 41 H 1.08997 * 110.51767 * 24.16679 * 21 19 18 42 42 H 1.09001 * 110.51431 * 261.44947 * 21 19 18 43 43 H 1.09005 * 110.50867 * 118.64824 * 22 21 19 44 44 H 1.09002 * 110.50918 * 241.21457 * 22 21 19 45 45 H 1.09002 * 110.36694 * 94.91934 * 23 22 21 46 46 H 1.08998 * 110.36945 * 217.25837 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.4982 -0.8452 1.1805 6 6 4.1050 -1.9449 0.4263 7 6 4.2995 -3.1306 1.3359 8 1 4.0006 -3.0711 2.3720 9 6 4.8590 -4.2912 0.8454 10 7 5.2236 -4.3635 -0.4162 11 14 5.0995 -5.7613 1.9726 12 1 4.6117 -5.4257 3.3345 13 1 4.3361 -6.9203 1.4444 14 1 6.5426 -6.1062 2.0352 15 6 4.2813 0.0523 1.8110 16 8 5.4855 0.0082 1.6743 17 6 3.6605 1.1107 2.6860 18 6 4.7646 1.9094 3.3816 19 6 4.1343 2.9835 4.2704 20 1 3.4008 2.5371 4.9419 21 6 5.2250 3.7205 5.0788 22 6 4.7396 5.1870 5.1142 23 6 3.4136 5.1660 4.3218 24 8 3.5191 4.0089 3.4604 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 3.1266 1.4437 -0.0843 30 1 1.6094 1.9801 -0.8448 31 1 1.7472 1.9314 0.9291 32 1 1.5931 -1.7139 1.3036 33 1 1.7653 -0.1501 2.1361 34 1 3.4505 -2.2239 -0.3994 35 1 5.0704 -1.6264 0.0332 36 1 5.6176 -5.1799 -0.7613 37 1 3.0273 0.6367 3.4360 38 1 3.0580 1.7813 2.0732 39 1 5.3977 2.3834 2.6316 40 1 5.3670 1.2388 3.9944 41 1 6.1884 3.6492 4.5740 42 1 5.2910 3.3157 6.0887 43 1 4.5657 5.5071 6.1415 44 1 5.4642 5.8409 4.6289 45 1 2.5677 5.0572 5.0006 46 1 3.3113 6.0752 3.7293 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112010155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:39 Heat of formation + Delta-G solvation = -107.987660 kcal Electronic energy + Delta-G solvation = -23426.062997 eV Core-core repulsion = 20121.827523 eV Total energy + Delta-G solvation = -3304.235474 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.67497 -38.98152 -36.23207 -33.83241 -33.11792 -32.21390 -32.11522 -28.95229 -27.27237 -26.93185 -25.51693 -24.28491 -22.54378 -21.47465 -20.87059 -20.10546 -18.05120 -16.65101 -16.48311 -16.36240 -15.77543 -15.43531 -15.22992 -14.84999 -14.36990 -14.10774 -13.82733 -13.49535 -13.23277 -12.80984 -12.65315 -12.34011 -12.12881 -12.02446 -11.87937 -11.61534 -11.47445 -11.43375 -11.27776 -10.98024 -10.85284 -10.84344 -10.75658 -10.64033 -10.53373 -10.44552 -10.23896 -10.08139 -9.81754 -9.54150 -8.76066 -8.40148 -7.53185 -6.00537 -4.05193 3.31241 3.38494 3.42109 3.55951 3.81062 4.02068 4.45845 4.49338 4.61418 4.78050 4.93055 5.09948 5.14128 5.16209 5.22275 5.33203 5.35422 5.39261 5.46736 5.55765 5.59460 5.67133 5.68673 5.76866 5.81568 5.82208 5.88165 5.97011 6.00567 6.06790 6.15276 6.28422 6.28967 6.36010 6.45714 6.57906 6.65638 6.81109 7.16237 7.53184 7.64558 7.97074 8.29156 8.54379 8.95657 9.20963 9.60086 11.07377 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.016214 B = 0.004479 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.464162 B = 6249.700318 C = 7466.952462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.147 4.147 4 C 0.116 3.884 5 N -0.597 5.597 6 C 0.245 3.755 7 C -0.525 4.525 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.894 5.894 11 Si 0.897 3.103 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.508 3.492 16 O -0.548 6.548 17 C -0.149 4.149 18 C -0.096 4.096 19 C 0.075 3.925 20 H 0.068 0.932 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.044 3.956 24 O -0.369 6.369 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.030 0.970 35 H 0.043 0.957 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.104 16.980 8.535 20.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.136 4.136 3 C -0.204 4.204 4 C -0.008 4.008 5 N -0.328 5.328 6 C 0.126 3.874 7 C -0.563 4.563 8 H 0.075 0.925 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.295 3.705 16 O -0.426 6.426 17 C -0.189 4.189 18 C -0.134 4.134 19 C 0.017 3.983 20 H 0.086 0.914 21 C -0.190 4.190 22 C -0.194 4.194 23 C -0.033 4.033 24 O -0.288 6.288 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.444 16.782 8.093 20.063 hybrid contribution 0.120 -0.917 0.800 1.223 sum -7.324 15.865 8.892 19.606 Atomic orbital electron populations 1.21756 0.95139 1.01720 1.01337 1.21562 0.95320 0.96631 1.00126 1.21951 1.01482 0.95832 1.01131 1.21526 0.81828 1.00864 0.96608 1.48177 1.05229 1.28060 1.51358 1.19229 0.94472 0.82656 0.91027 1.21497 1.40815 0.97299 0.96736 0.92491 1.24936 0.95331 0.98718 0.95148 1.69948 1.42179 1.27755 1.13491 0.86467 0.77905 0.82362 0.80825 1.19841 1.20995 1.20920 1.20348 0.87192 0.82180 0.80757 1.90643 1.14708 1.73681 1.63603 1.21918 0.99582 0.97632 0.99721 1.21396 0.97461 0.95493 0.99042 1.23111 0.93471 0.89545 0.92170 0.91417 1.22995 1.00210 0.94708 1.01053 1.22934 0.98028 0.97444 1.00950 1.23399 0.96501 0.90105 0.93322 1.89200 1.81933 1.22105 1.35606 0.92892 0.92902 0.92534 0.90559 0.92524 0.93132 0.92523 0.90436 0.91442 0.95191 0.93891 0.92839 0.90032 0.88210 0.90297 0.90029 0.90249 0.90587 0.90841 0.90795 0.92518 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.19 37.16 0.34 -1.31 16 2 C -0.12 -1.71 3.11 -90.62 -0.28 -2.00 16 3 C -0.15 -2.04 7.59 37.15 0.28 -1.76 16 4 C 0.12 1.95 4.89 -4.04 -0.02 1.93 16 5 N -0.60 -12.87 2.26 -175.06 -0.40 -13.26 16 6 C 0.25 6.54 5.22 -5.19 -0.03 6.51 16 7 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 8 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 11 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 C 0.51 10.81 6.45 -10.98 -0.07 10.74 16 16 O -0.55 -14.05 15.54 5.56 0.09 -13.96 16 17 C -0.15 -2.34 3.99 -27.88 -0.11 -2.45 16 18 C -0.10 -1.41 4.14 -26.73 -0.11 -1.52 16 19 C 0.07 0.88 3.25 -25.95 -0.08 0.79 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 21 C -0.15 -1.48 6.63 -25.16 -0.17 -1.65 16 22 C -0.16 -1.28 7.08 -25.16 -0.18 -1.45 16 23 C 0.04 0.40 7.65 37.93 0.29 0.69 16 24 O -0.37 -4.67 11.13 -35.23 -0.39 -5.06 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.28 8.01 -51.93 -0.42 0.86 16 29 H 0.06 0.92 6.87 -51.93 -0.36 0.57 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.72 6.49 -51.93 -0.34 0.38 16 32 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 33 H 0.07 0.96 6.10 -51.93 -0.32 0.65 16 34 H 0.03 0.81 7.94 -51.93 -0.41 0.40 16 35 H 0.04 1.30 7.35 -51.93 -0.38 0.92 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.08 1.15 7.37 -51.93 -0.38 0.77 16 38 H 0.10 1.47 4.66 -51.93 -0.24 1.22 16 39 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 41 H 0.08 0.82 7.87 -51.93 -0.41 0.41 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 361.63 15.07 5.45 5.45 Total: -1.00 -33.21 361.63 -8.38 -41.59 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.29 Total: -0.38 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -0.56 Total: -5.22 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.34 Total: -39.45 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.31 Total: -19.02 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.21 -8.38 -41.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112010155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.399 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds