Wall clock time and date at job start Tue Mar 31 2020 06:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46886 * 2 1 4 4 C 1.53004 * 109.46886 * 180.02562 * 3 2 1 5 5 O 1.45203 * 109.47006 * 179.97438 * 4 3 2 6 6 C 1.34233 * 116.99757 * 179.97438 * 5 4 3 7 7 O 1.20825 * 120.00120 * 0.02562 * 6 5 4 8 8 C 1.50694 * 119.99995 * 180.02562 * 6 5 4 9 9 H 1.09006 * 109.47398 * 300.00441 * 8 6 5 10 10 C 1.53004 * 109.47288 * 60.00034 * 8 6 5 11 11 N 1.46500 * 109.47397 * 179.97438 * 8 6 5 12 12 C 1.36940 * 119.99562 * 119.85825 * 11 8 6 13 13 H 1.07999 * 119.99931 * 212.23430 * 12 11 8 14 14 C 1.38819 * 120.00129 * 32.23864 * 12 11 8 15 15 N 1.31620 * 119.99833 * 20.20026 * 14 12 11 16 16 Si 1.86797 * 119.99913 * 200.19792 * 14 12 11 17 17 H 1.48496 * 109.47223 * 59.99882 * 16 14 12 18 18 H 1.48503 * 109.46891 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47088 * 300.00027 * 16 14 12 20 20 C 1.46491 * 120.00124 * 299.86533 * 11 8 6 21 21 C 1.54270 * 110.03050 * 241.49838 * 20 11 8 22 22 C 1.54893 * 104.19641 * 217.10274 * 21 20 11 23 23 C 1.54891 * 102.74783 * 37.94499 * 22 21 20 24 24 C 1.53873 * 110.03523 * 124.33210 * 20 11 8 25 25 H 1.08998 * 109.46814 * 300.00243 * 1 2 3 26 26 H 1.09006 * 109.46999 * 59.99902 * 1 2 3 27 27 H 1.08998 * 109.47006 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46814 * 239.99757 * 2 1 3 29 29 H 1.08998 * 109.47170 * 119.99869 * 2 1 3 30 30 H 1.08998 * 109.47592 * 60.00233 * 3 2 1 31 31 H 1.09006 * 109.47382 * 299.99864 * 3 2 1 32 32 H 1.09005 * 109.47195 * 59.99722 * 4 3 2 33 33 H 1.08998 * 109.47170 * 299.99869 * 4 3 2 34 34 H 1.09001 * 109.47437 * 180.02562 * 10 8 6 35 35 H 1.09000 * 109.47077 * 300.00281 * 10 8 6 36 36 H 1.08996 * 109.47080 * 59.99798 * 10 8 6 37 37 H 0.96992 * 119.99841 * 184.98634 * 15 14 12 38 38 H 1.09001 * 110.02232 * 2.93832 * 20 11 8 39 39 H 1.08994 * 110.48519 * 335.78311 * 21 20 11 40 40 H 1.09000 * 110.48667 * 98.42698 * 21 20 11 41 41 H 1.08994 * 110.75729 * 279.63193 * 22 21 20 42 42 H 1.08996 * 110.91122 * 156.32653 * 22 21 20 43 43 H 1.09001 * 110.49149 * 203.37840 * 23 22 21 44 44 H 1.09005 * 110.60276 * 80.78517 * 23 22 21 45 45 H 1.08991 * 110.03767 * 238.56707 * 24 20 11 46 46 H 1.09003 * 110.03142 * 359.95214 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 8 4.0540 2.8115 -0.0013 6 6 5.3848 2.9874 -0.0013 7 8 6.1208 2.0292 -0.0014 8 6 5.9608 4.3799 -0.0014 9 1 5.6247 4.9121 -0.8913 10 6 5.4893 5.1269 1.2479 11 7 7.4238 4.3032 -0.0008 12 6 8.1387 4.8569 -1.0292 13 1 9.0719 4.4107 -1.3398 14 6 7.6640 5.9917 -1.6726 15 7 6.7767 6.7619 -1.0793 16 14 8.2845 6.4257 -3.3802 17 1 7.9641 5.3207 -4.3190 18 1 7.6280 7.6749 -3.8427 19 1 9.7551 6.6270 -3.3361 20 6 8.1218 3.6342 1.0997 21 6 9.0384 4.6367 1.8310 22 6 10.2915 3.8051 2.2016 23 6 10.4746 2.8926 0.9635 24 6 9.0349 2.5253 0.5481 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9286 0.8891 34 1 5.9056 6.1343 1.2477 35 1 4.4008 5.1839 1.2480 36 1 5.8253 4.5947 2.1378 37 1 6.3911 7.5135 -1.5558 38 1 7.3993 3.2104 1.7971 39 1 9.3086 5.4595 1.1692 40 1 8.5510 5.0134 2.7303 41 1 10.1095 3.2101 3.0965 42 1 11.1598 4.4497 2.3381 43 1 11.0352 1.9964 1.2295 44 1 10.9774 3.4317 0.1606 45 1 8.7561 1.5635 0.9784 46 1 8.9580 2.4843 -0.5384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121802605.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:47 Heat of formation + Delta-G solvation = -93.480473 kcal Electronic energy + Delta-G solvation = -23869.565088 eV Core-core repulsion = 20565.958693 eV Total energy + Delta-G solvation = -3303.606395 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70944 -37.76003 -36.17122 -34.76244 -34.48622 -31.54480 -29.93221 -29.09838 -27.75378 -26.54608 -24.36918 -23.69874 -22.27446 -21.15509 -19.91889 -19.76005 -19.00519 -16.66281 -16.57570 -16.22737 -15.70587 -14.99728 -14.79439 -14.49983 -14.09312 -13.72214 -13.53911 -13.28156 -12.92271 -12.88626 -12.46322 -12.01093 -11.99729 -11.65631 -11.35806 -11.24506 -11.09011 -10.99559 -10.90693 -10.80525 -10.78248 -10.63078 -10.33823 -10.26707 -10.22782 -10.15893 -9.99717 -9.85509 -9.78276 -9.53099 -9.09698 -8.50358 -6.74875 -5.90605 -3.37585 3.20358 3.29469 3.41970 3.44317 3.45741 4.45088 4.83046 4.85209 4.96080 5.25074 5.25894 5.28137 5.48438 5.50668 5.53533 5.55430 5.64711 5.73267 5.73572 5.75797 5.94969 6.02399 6.15800 6.22637 6.24793 6.31793 6.33928 6.40481 6.44248 6.53742 6.59234 6.66700 6.73860 6.75095 6.93289 7.09137 7.15188 7.20708 7.33465 7.39026 7.44903 7.80700 8.38767 8.69332 9.11964 9.72945 10.27620 11.14602 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.005232 C = 0.004347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.109498 B = 5349.910643 C = 6439.349114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.062 3.938 5 O -0.368 6.368 6 C 0.431 3.569 7 O -0.512 6.512 8 C 0.198 3.802 9 H 0.127 0.873 10 C -0.137 4.137 11 N -0.553 5.553 12 C -0.252 4.252 13 H 0.069 0.931 14 C 0.012 3.988 15 N -0.888 5.888 16 Si 0.895 3.105 17 H -0.284 1.284 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.182 3.818 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.122 4.122 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.257 0.743 38 H 0.047 0.953 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.046 0.954 44 H 0.060 0.940 45 H 0.045 0.955 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 -7.932 4.367 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.012 4.012 5 O -0.285 6.285 6 C 0.272 3.728 7 O -0.399 6.399 8 C 0.087 3.913 9 H 0.144 0.856 10 C -0.196 4.196 11 N -0.271 5.271 12 C -0.381 4.381 13 H 0.087 0.913 14 C -0.188 4.188 15 N -0.531 5.531 16 Si 0.724 3.276 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.206 1.206 20 C 0.075 3.925 21 C -0.171 4.171 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.161 4.161 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.264 -8.043 4.331 11.076 hybrid contribution 0.253 -0.068 -0.978 1.013 sum -6.010 -8.111 3.352 10.637 Atomic orbital electron populations 1.21749 0.95440 1.01551 1.02037 1.21442 0.96106 0.96146 1.02313 1.21582 0.93353 0.97177 1.03515 1.22860 0.94143 0.82582 1.01653 1.86650 1.26888 1.30307 1.84657 1.26877 0.79135 0.95888 0.70900 1.90534 1.60153 1.43577 1.45605 1.20110 0.84708 0.84840 1.01611 0.85622 1.22020 0.99295 1.02612 0.95673 1.43763 0.98437 1.63078 1.21815 1.19003 1.05913 1.04168 1.08997 0.91325 1.25073 0.99769 0.94445 0.99523 1.70055 1.31988 1.16302 1.34733 0.86490 0.78697 0.77335 0.85063 1.21014 1.21542 1.20649 1.20885 0.92248 0.90826 0.88542 1.22819 0.95120 0.99754 0.99386 1.22423 0.98394 0.98066 0.97219 1.22307 0.97741 0.98119 0.97652 1.22415 0.93584 0.98020 1.02077 0.92609 0.92581 0.92735 0.91795 0.91829 0.91002 0.90956 0.92130 0.92217 0.89311 0.93636 0.95005 0.93331 0.93505 0.89718 0.93610 0.92901 0.92847 0.93491 0.92072 0.93640 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.12 -1.19 5.93 -26.73 -0.16 -1.35 16 3 C -0.12 -1.42 5.59 -26.73 -0.15 -1.57 16 4 C 0.06 0.97 5.47 37.16 0.20 1.17 16 5 O -0.37 -7.05 10.12 -39.26 -0.40 -7.45 16 6 C 0.43 9.43 6.96 36.00 0.25 9.68 16 7 O -0.51 -11.99 14.26 -18.75 -0.27 -12.25 16 8 C 0.20 4.56 2.25 -69.08 -0.16 4.40 16 9 H 0.13 3.19 6.04 -51.93 -0.31 2.88 16 10 C -0.14 -2.85 9.00 37.16 0.33 -2.51 16 11 N -0.55 -13.27 2.08 -158.19 -0.33 -13.60 16 12 C -0.25 -6.52 7.80 -15.06 -0.12 -6.64 16 13 H 0.07 1.81 7.02 -52.49 -0.37 1.44 16 14 C 0.01 0.30 4.78 -17.43 -0.08 0.22 16 15 N -0.89 -23.44 10.78 55.49 0.60 -22.84 16 16 Si 0.90 20.85 29.60 -169.99 -5.03 15.82 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.18 3.93 1.85 -66.82 -0.12 3.81 16 21 C -0.13 -2.64 6.42 -25.07 -0.16 -2.80 16 22 C -0.12 -2.09 6.91 -24.74 -0.17 -2.26 16 23 C -0.12 -2.13 6.83 -25.07 -0.17 -2.31 16 24 C -0.12 -2.50 5.43 -25.61 -0.14 -2.64 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 33 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 34 H 0.09 2.02 7.45 -51.93 -0.39 1.63 16 35 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 36 H 0.03 0.62 7.12 -51.93 -0.37 0.25 16 37 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 38 H 0.05 1.03 6.55 -51.93 -0.34 0.69 16 39 H 0.08 1.93 7.18 -51.93 -0.37 1.56 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 1.65 6.82 -51.93 -0.35 1.29 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -27.21 360.01 -8.68 -35.89 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -8.40 Total: 2.67 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.27 Total: -3.66 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.27 Total: -36.45 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.66 Total: -19.71 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.21 -8.68 -35.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121802605.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.587 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds