Wall clock time and date at job start Tue Mar 31 2020 06:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 O 1.45206 * 109.46989 * 119.99587 * 2 1 3 6 6 C 1.34224 * 117.00077 * 60.00071 * 5 2 1 7 7 O 1.20833 * 120.00103 * 359.97438 * 6 5 2 8 8 C 1.50696 * 120.00302 * 180.02562 * 6 5 2 9 9 H 1.08997 * 110.37152 * 59.29323 * 8 6 5 10 10 C 1.54382 * 110.41071 * 296.94567 * 8 6 5 11 11 C 1.54258 * 105.06261 * 217.36873 * 10 8 6 12 12 C 1.54374 * 105.06095 * 359.97438 * 11 10 8 13 13 N 1.48558 * 110.41658 * 181.64986 * 8 6 5 14 14 C 1.46905 * 110.99920 * 277.82101 * 13 8 6 15 15 C 1.53000 * 109.47187 * 169.99684 * 14 13 8 16 16 C 1.53001 * 109.46778 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.46981 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99636 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99927 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99983 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99964 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47064 * 90.00147 * 21 19 17 23 23 H 1.48492 * 109.47442 * 210.00367 * 21 19 17 24 24 H 1.48501 * 109.47409 * 330.00784 * 21 19 17 25 25 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 26 26 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 30 30 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 31 31 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 32 32 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 33 33 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 34 34 H 1.09007 * 110.32077 * 336.26836 * 10 8 6 35 35 H 1.09002 * 110.32555 * 98.36781 * 10 8 6 36 36 H 1.09003 * 110.32429 * 118.89656 * 11 10 8 37 37 H 1.08996 * 110.32481 * 240.99900 * 11 10 8 38 38 H 1.09005 * 110.41458 * 142.63286 * 12 11 10 39 39 H 1.08998 * 110.41531 * 264.95689 * 12 11 10 40 40 H 1.09002 * 109.46279 * 289.99342 * 14 13 8 41 41 H 1.08996 * 109.47239 * 49.98789 * 14 13 8 42 42 H 1.08991 * 109.46979 * 299.99469 * 15 14 13 43 43 H 1.09003 * 109.47166 * 59.99663 * 15 14 13 44 44 H 1.09002 * 109.46875 * 299.99772 * 16 15 14 45 45 H 1.08994 * 109.47312 * 59.99945 * 16 15 14 46 46 H 0.97000 * 119.99504 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1857 6 6 1.6533 -1.9683 1.3381 7 8 0.9559 -2.5025 0.5084 8 6 2.1172 -2.7432 2.5444 9 1 1.7711 -2.2633 3.4597 10 6 3.6564 -2.8630 2.5481 11 6 3.9470 -4.2786 3.0876 12 6 2.5591 -4.8949 3.3651 13 7 1.6303 -4.1452 2.4784 14 6 0.2453 -4.2446 2.9581 15 6 -0.3036 -5.6382 2.6461 16 6 -1.7459 -5.7419 3.1463 17 6 -2.2864 -7.1148 2.8396 18 1 -1.6637 -7.8406 2.3378 19 6 -3.5759 -7.4442 3.1997 20 7 -4.3343 -6.5602 3.8104 21 14 -4.2462 -9.1457 2.8190 22 1 -3.9605 -10.0564 3.9568 23 1 -5.7136 -9.0637 2.6071 24 1 -3.5972 -9.6700 1.5905 25 1 -0.3633 0.5139 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 4.0469 -2.7559 1.5360 35 1 4.0932 -2.1094 3.2033 36 1 4.4802 -4.8665 2.3404 37 1 4.5279 -4.2211 4.0081 38 1 2.5558 -5.9547 3.1102 39 1 2.2832 -4.7553 4.4103 40 1 0.2210 -4.0771 4.0349 41 1 -0.3667 -3.4930 2.4596 42 1 -0.2792 -5.8057 1.5694 43 1 0.3085 -6.3899 3.1447 44 1 -1.7698 -5.5746 4.2231 45 1 -2.3581 -4.9903 2.6481 46 1 -5.2416 -6.7919 4.0634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000148942334.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:33 Heat of formation + Delta-G solvation = -98.605327 kcal Electronic energy + Delta-G solvation = -23310.303194 eV Core-core repulsion = 20006.474569 eV Total energy + Delta-G solvation = -3303.828625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.91063 -38.85772 -36.62104 -34.45152 -34.03114 -32.42871 -30.18192 -29.57297 -27.56427 -27.49457 -26.15941 -23.96425 -22.71704 -21.24332 -20.76027 -19.81326 -19.33955 -17.29313 -16.58866 -16.43467 -15.94462 -15.36907 -15.13451 -14.49337 -14.40064 -14.35889 -13.90079 -13.60733 -13.44549 -12.76222 -12.60255 -12.54856 -12.35279 -12.18206 -12.03166 -12.00307 -11.91189 -11.54362 -11.42892 -11.28617 -11.19722 -11.06084 -10.77869 -10.66545 -10.50277 -10.46259 -10.39498 -9.76907 -9.56151 -9.27337 -9.00829 -8.32645 -8.28289 -5.94075 -3.95615 2.36443 2.55420 3.36038 3.41910 3.46425 4.12809 4.46706 4.48366 4.52926 4.58631 4.62395 4.77097 4.85102 4.93271 5.15267 5.30612 5.38058 5.39227 5.41755 5.53059 5.57296 5.59663 5.63451 5.70958 5.72271 5.73326 5.77636 5.83517 5.98123 6.01414 6.12606 6.15600 6.22432 6.35416 6.56027 6.70625 6.75777 7.00074 7.24830 7.32100 7.75226 7.90934 8.00531 8.06916 8.50569 9.11473 9.67920 11.17531 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.003768 C = 0.003304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.937914 B = 7429.535975 C = 8472.594006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.357 6.357 6 C 0.469 3.531 7 O -0.472 6.472 8 C 0.066 3.934 9 H 0.085 0.915 10 C -0.108 4.108 11 C -0.124 4.124 12 C 0.034 3.966 13 N -0.489 5.489 14 C 0.047 3.953 15 C -0.098 4.098 16 C 0.022 3.978 17 C -0.516 4.516 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.033 0.967 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.013 0.987 45 H 0.015 0.985 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.786 15.027 -4.168 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.081 3.919 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.275 6.275 6 C 0.310 3.690 7 O -0.357 6.357 8 C -0.044 4.044 9 H 0.102 0.898 10 C -0.146 4.146 11 C -0.162 4.162 12 C -0.093 4.093 13 N -0.214 5.214 14 C -0.080 4.080 15 C -0.136 4.136 16 C -0.016 4.016 17 C -0.554 4.554 18 H 0.073 0.927 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.031 0.969 45 H 0.034 0.966 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 17.367 14.709 -4.940 23.288 hybrid contribution -0.729 -0.520 0.571 1.061 sum 16.638 14.189 -4.369 22.299 Atomic orbital electron populations 1.22504 0.93959 1.05155 1.02588 1.22136 0.94473 0.92061 0.83199 1.21837 1.02001 0.92831 1.02934 1.22484 1.01414 1.03499 0.96580 1.86518 1.70286 1.25570 1.45089 1.23253 0.77899 0.80191 0.87644 1.90618 1.33456 1.69368 1.42223 1.22232 0.96891 0.91670 0.93657 0.89769 1.22200 0.91869 0.97998 1.02521 1.22325 0.97234 0.95334 1.01291 1.23171 0.91189 0.99779 0.95165 1.65172 1.03408 1.03805 1.49044 1.22513 0.87007 1.01406 0.97047 1.21545 0.98730 0.92201 1.01151 1.19074 0.89447 0.96975 0.96064 1.21253 0.97911 0.98575 1.37678 0.92663 1.25027 0.97080 0.97110 0.95338 1.69973 1.08511 1.34228 1.40991 0.86598 0.78060 0.84666 0.78709 1.20733 1.21270 1.19841 0.92043 0.91160 0.89475 0.91625 0.90500 0.91554 0.89523 0.91228 0.92199 0.90780 0.90230 0.90715 0.90971 0.89159 0.93320 0.94912 0.91123 0.92386 0.93579 0.96907 0.96640 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 8.37 37.16 0.31 -1.86 16 2 C 0.12 1.30 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -1.11 8.85 37.16 0.33 -0.79 16 4 C -0.18 -1.98 8.37 37.16 0.31 -1.67 16 5 O -0.36 -4.57 9.88 -39.24 -0.39 -4.96 16 6 C 0.47 6.91 6.23 36.00 0.22 7.14 16 7 O -0.47 -8.35 11.33 -18.76 -0.21 -8.56 16 8 C 0.07 0.88 2.78 -67.22 -0.19 0.69 16 9 H 0.08 1.05 7.99 -51.93 -0.42 0.64 16 10 C -0.11 -1.11 6.53 -25.35 -0.17 -1.28 16 11 C -0.12 -1.24 7.00 -25.35 -0.18 -1.42 16 12 C 0.03 0.45 5.92 -2.11 -0.01 0.44 16 13 N -0.49 -7.79 4.61 -223.39 -1.03 -8.82 16 14 C 0.05 0.89 4.63 -3.82 -0.02 0.87 16 15 C -0.10 -2.17 5.27 -26.73 -0.14 -2.31 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.46 16 17 C -0.52 -15.17 9.11 -34.44 -0.31 -15.48 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 21 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.09 1.29 5.89 -51.93 -0.31 0.98 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.18 5.89 -51.93 -0.31 0.88 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.78 7.85 -51.92 -0.41 0.37 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.22 7.86 -51.93 -0.41 0.82 16 39 H 0.05 0.62 7.76 -51.93 -0.40 0.22 16 40 H 0.03 0.59 7.77 -51.93 -0.40 0.18 16 41 H 0.07 1.41 7.35 -51.93 -0.38 1.03 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.05 0.98 7.48 -51.93 -0.39 0.59 16 44 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -32.68 362.34 -9.09 -41.77 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.46 Total: -2.70 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -0.18 Total: -12.48 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.29 Total: -35.78 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.60 Total: -13.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.68 -9.09 -41.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148942334.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.836 kcal (2) G-P(sol) polarization free energy of solvation -32.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds