Wall clock time and date at job start Tue Mar 31 2020 07:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47118 * 2 1 4 4 H 1.08992 * 109.47771 * 306.27104 * 3 2 1 5 5 C 1.50708 * 109.47153 * 186.26521 * 3 2 1 6 6 H 1.07997 * 119.99845 * 244.12452 * 5 3 2 7 7 C 1.37877 * 119.99607 * 64.12460 * 5 3 2 8 8 N 1.31515 * 120.00198 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99866 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47129 * 0.02562 * 9 7 5 11 11 H 1.48506 * 109.46908 * 120.00194 * 9 7 5 12 12 H 1.48500 * 109.47452 * 240.00118 * 9 7 5 13 13 N 1.46906 * 109.46865 * 66.27113 * 3 2 1 14 14 C 1.48561 * 111.00153 * 186.73504 * 13 3 2 15 15 C 1.54379 * 104.59509 * 200.95978 * 14 13 3 16 16 C 1.54261 * 105.06138 * 23.85246 * 15 14 13 17 17 C 1.48562 * 111.00161 * 71.31436 * 13 3 2 18 18 H 1.09014 * 110.41058 * 40.14520 * 17 13 3 19 19 C 1.50701 * 110.41388 * 277.82472 * 17 13 3 20 20 O 1.20825 * 119.99479 * 330.21313 * 19 17 13 21 21 O 1.34225 * 120.00335 * 150.22133 * 19 17 13 22 22 C 1.45201 * 117.00097 * 179.97438 * 21 19 17 23 23 C 1.53007 * 109.46838 * 59.99735 * 22 21 19 24 24 C 1.52998 * 109.46943 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.46961 * 299.99904 * 22 21 19 26 26 H 1.08997 * 109.47134 * 186.88247 * 1 2 3 27 27 H 1.09002 * 109.47124 * 306.88873 * 1 2 3 28 28 H 1.09001 * 109.47002 * 66.88596 * 1 2 3 29 29 H 1.08999 * 109.47633 * 240.00208 * 2 1 3 30 30 H 1.09000 * 109.47516 * 120.00491 * 2 1 3 31 31 H 0.96991 * 120.00099 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.40916 * 319.74019 * 14 13 3 33 33 H 1.08996 * 110.40807 * 82.17579 * 14 13 3 34 34 H 1.08999 * 110.32344 * 264.95870 * 15 14 13 35 35 H 1.08998 * 110.41014 * 142.79353 * 15 14 13 36 36 H 1.09003 * 110.32114 * 241.10529 * 16 15 14 37 37 H 1.09000 * 110.40938 * 118.93783 * 16 15 14 38 38 H 1.08998 * 109.46803 * 60.00170 * 23 22 21 39 39 H 1.08998 * 109.46530 * 180.02562 * 23 22 21 40 40 H 1.08992 * 109.47083 * 299.99587 * 23 22 21 41 41 H 1.09001 * 109.47033 * 60.00279 * 24 22 21 42 42 H 1.09003 * 109.46874 * 180.02562 * 24 22 21 43 43 H 1.09005 * 109.47338 * 299.99693 * 24 22 21 44 44 H 1.08992 * 109.47180 * 60.00053 * 25 22 21 45 45 H 1.08995 * 109.46730 * 180.02562 * 25 22 21 46 46 H 1.09004 * 109.47146 * 299.99414 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5880 1.9878 -0.8284 5 6 3.5390 1.4453 -0.1551 6 1 4.1635 1.8237 0.6407 7 6 4.1132 0.9649 -1.3129 8 7 3.3526 0.5047 -2.2822 9 14 5.9712 0.9691 -1.5055 10 1 6.5944 1.5347 -0.2819 11 1 6.4510 -0.4218 -1.7072 12 1 6.3454 1.7970 -2.6801 13 7 1.6777 2.0899 1.2680 14 6 2.0130 3.5369 1.2418 15 6 2.0971 3.9437 2.7287 16 6 2.4073 2.6356 3.4852 17 6 2.4845 1.5485 2.3918 18 1 3.5173 1.3944 2.0787 19 6 1.8898 0.2571 2.8915 20 8 0.6992 0.0685 2.8088 21 8 2.6826 -0.6834 3.4287 22 6 2.0411 -1.9018 3.8894 23 6 1.3343 -2.5815 2.7149 24 6 3.0969 -2.8476 4.4653 25 6 1.0163 -1.5602 4.9729 26 1 -0.3633 -1.0202 0.1231 27 1 -0.3633 0.6169 0.8219 28 1 -0.3633 0.4034 -0.9452 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.7565 0.1671 -3.0968 32 1 2.9723 3.6960 0.7493 33 1 1.2278 4.1000 0.7374 34 1 1.1455 4.3575 3.0624 35 1 2.8978 4.6676 2.8800 36 1 1.6079 2.4074 4.1902 37 1 3.3606 2.7156 4.0076 38 1 2.0644 -2.8248 1.9431 39 1 0.8524 -3.4959 3.0610 40 1 0.5822 -1.9079 2.3044 41 1 3.6007 -2.3635 5.3019 42 1 2.6154 -3.7624 4.8108 43 1 3.8267 -3.0909 3.6931 44 1 0.2643 -0.8866 4.5623 45 1 0.5351 -2.4748 5.3191 46 1 1.5199 -1.0759 5.8096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157185297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:11 Heat of formation + Delta-G solvation = -85.873809 kcal Electronic energy + Delta-G solvation = -25261.564794 eV Core-core repulsion = 21958.288249 eV Total energy + Delta-G solvation = -3303.276545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45718 -38.35290 -36.03589 -34.25507 -33.62207 -31.67835 -29.69557 -28.91957 -27.24143 -27.11915 -26.17251 -23.55924 -22.84218 -20.75399 -20.26414 -19.28770 -18.83688 -17.16289 -16.26848 -15.81171 -15.58400 -15.07257 -14.57086 -14.29891 -13.88198 -13.62218 -13.15515 -12.99762 -12.91106 -12.50201 -12.31744 -12.25813 -12.02286 -11.70821 -11.64601 -11.52579 -11.35666 -11.18465 -11.03722 -10.95273 -10.78542 -10.74617 -10.56286 -10.52569 -10.15737 -10.00038 -9.92195 -9.59686 -9.45336 -9.19534 -9.06355 -8.40054 -7.31777 -6.04976 -4.17603 2.96355 3.20901 3.23463 3.32484 3.34789 4.35876 4.95383 4.97417 4.99263 5.13271 5.15770 5.19302 5.23606 5.51591 5.53753 5.60309 5.72894 5.81764 5.94219 5.98957 6.02106 6.09087 6.14450 6.15402 6.21116 6.26215 6.40512 6.46868 6.55078 6.58935 6.61259 6.65975 6.75749 6.81892 7.04531 7.10481 7.30948 7.33819 7.56595 7.73383 7.82716 8.04832 8.11003 8.33000 8.64900 8.92045 9.49873 10.96607 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014138 B = 0.007540 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.952219 B = 3712.744019 C = 4303.754093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.101 4.101 3 C 0.199 3.801 4 H 0.047 0.953 5 C -0.551 4.551 6 H 0.062 0.938 7 C 0.072 3.928 8 N -0.880 5.880 9 Si 0.885 3.115 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.487 5.487 14 C 0.039 3.961 15 C -0.120 4.120 16 C -0.110 4.110 17 C 0.065 3.935 18 H 0.102 0.898 19 C 0.486 3.514 20 O -0.488 6.488 21 O -0.357 6.357 22 C 0.117 3.883 23 C -0.183 4.183 24 C -0.139 4.139 25 C -0.180 4.180 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.032 0.968 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.261 0.739 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.064 0.936 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.633 -1.373 11.960 12.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.140 4.140 3 C 0.093 3.907 4 H 0.065 0.935 5 C -0.590 4.590 6 H 0.080 0.920 7 C -0.131 4.131 8 N -0.518 5.518 9 Si 0.713 3.287 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.213 5.213 14 C -0.089 4.089 15 C -0.158 4.158 16 C -0.148 4.148 17 C -0.045 4.045 18 H 0.120 0.880 19 C 0.329 3.671 20 O -0.374 6.374 21 O -0.275 6.275 22 C 0.081 3.919 23 C -0.240 4.240 24 C -0.196 4.196 25 C -0.237 4.237 26 H 0.040 0.960 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.099 0.901 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.104 0.896 45 H 0.083 0.917 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.584 -1.654 11.820 12.211 hybrid contribution 1.882 -0.200 -0.477 1.951 sum -0.702 -1.854 11.343 11.515 Atomic orbital electron populations 1.21714 0.98313 0.98911 1.00540 1.21521 0.92954 0.98636 1.00860 1.19492 0.93595 0.91795 0.85860 0.93543 1.21707 0.92595 1.42704 1.01969 0.92046 1.24897 0.97770 0.94750 0.95713 1.69926 1.34683 1.40959 1.06195 0.86644 0.86093 0.77803 0.78138 1.19740 1.20952 1.20967 1.65500 1.49480 1.01757 1.04521 1.22937 1.00925 0.90181 0.94866 1.22270 1.01093 0.96355 0.96118 1.22202 1.01431 0.94335 0.96850 1.22302 0.99664 0.88734 0.93795 0.88046 1.23301 0.85661 0.84675 0.73506 1.90487 1.16819 1.78751 1.51334 1.86576 1.42403 1.26635 1.71869 1.22011 0.92872 0.82864 0.94149 1.22503 1.02253 1.01269 0.97991 1.21827 0.98558 0.97865 1.01395 1.22464 1.00078 1.03016 0.98120 0.95999 0.91616 0.94879 0.90142 0.95184 0.92862 0.92184 0.91046 0.91642 0.91819 0.91647 0.91241 0.91905 0.91973 0.89129 0.91860 0.90923 0.91504 0.89624 0.91714 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.13 37.16 0.34 -2.72 16 2 C -0.10 -2.47 4.78 -26.73 -0.13 -2.60 16 3 C 0.20 4.89 1.65 -68.86 -0.11 4.78 16 4 H 0.05 1.27 8.12 -51.93 -0.42 0.85 16 5 C -0.55 -14.27 6.58 -34.44 -0.23 -14.50 16 6 H 0.06 1.57 5.62 -52.49 -0.29 1.28 16 7 C 0.07 1.93 5.29 -17.82 -0.09 1.83 16 8 N -0.88 -24.52 11.62 55.43 0.64 -23.87 16 9 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.49 -10.35 4.21 -216.96 -0.91 -11.26 16 14 C 0.04 0.72 6.32 -2.18 -0.01 0.71 16 15 C -0.12 -1.81 7.00 -25.35 -0.18 -1.99 16 16 C -0.11 -1.75 6.54 -25.35 -0.17 -1.92 16 17 C 0.06 1.28 2.46 -67.22 -0.17 1.12 16 18 H 0.10 2.21 5.33 -51.92 -0.28 1.93 16 19 C 0.49 9.57 3.69 36.01 0.13 9.70 16 20 O -0.49 -10.00 9.40 -18.75 -0.18 -10.18 16 21 O -0.36 -6.58 9.89 -39.24 -0.39 -6.97 16 22 C 0.12 1.79 1.13 -90.62 -0.10 1.69 16 23 C -0.18 -2.91 7.99 37.16 0.30 -2.62 16 24 C -0.14 -1.70 8.85 37.16 0.33 -1.37 16 25 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 1.49 6.33 -51.93 -0.33 1.16 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 2.19 6.28 -51.93 -0.33 1.86 16 30 H 0.03 0.72 4.61 -51.93 -0.24 0.48 16 31 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 32 H 0.06 1.20 6.85 -51.93 -0.36 0.85 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.68 5.81 -51.93 -0.30 1.37 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.35 5.89 -51.93 -0.31 1.05 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -28.15 342.60 -8.36 -36.51 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.89 Total: 4.96 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 0.22 Total: -10.02 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.27 Total: -35.14 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.56 Total: -17.15 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.15 -8.36 -36.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157185297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.364 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds