Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47349 * 2 1 4 4 C 1.52998 * 109.47241 * 239.99305 * 2 1 3 5 5 O 1.45204 * 109.47355 * 119.99592 * 2 1 3 6 6 C 1.34232 * 117.00058 * 59.99763 * 5 2 1 7 7 O 1.20827 * 119.99681 * 0.02562 * 6 5 2 8 8 C 1.50697 * 120.00150 * 180.02562 * 6 5 2 9 9 H 1.09002 * 109.90678 * 300.70315 * 8 6 5 10 10 C 1.53994 * 109.91780 * 61.80734 * 8 6 5 11 11 C 1.54590 * 105.14312 * 120.77648 * 10 8 6 12 12 C 1.54940 * 102.92203 * 21.95574 * 11 10 8 13 13 N 1.47900 * 110.08124 * 179.49410 * 8 6 5 14 14 C 1.46898 * 111.00131 * 94.71022 * 13 8 6 15 15 C 1.53007 * 109.47221 * 169.99927 * 14 13 8 16 16 C 1.52999 * 109.46777 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.46843 * 179.97438 * 16 15 14 18 18 H 1.08007 * 120.00307 * 0.02562 * 17 16 15 19 19 C 1.37875 * 120.00055 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00266 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99822 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47523 * 90.00180 * 21 19 17 23 23 H 1.48511 * 109.47065 * 209.99752 * 21 19 17 24 24 H 1.48497 * 109.47577 * 329.99616 * 21 19 17 25 25 H 1.08997 * 109.46880 * 300.00027 * 1 2 3 26 26 H 1.08998 * 109.47107 * 60.00322 * 1 2 3 27 27 H 1.08998 * 109.47033 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47149 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46427 * 299.99573 * 3 2 1 30 30 H 1.09001 * 109.47390 * 59.99425 * 3 2 1 31 31 H 1.08998 * 109.47259 * 300.00048 * 4 2 1 32 32 H 1.08998 * 109.46765 * 60.00164 * 4 2 1 33 33 H 1.09001 * 109.46905 * 180.02562 * 4 2 1 34 34 H 1.09005 * 110.30831 * 239.69098 * 10 8 6 35 35 H 1.09000 * 110.30875 * 1.85720 * 10 8 6 36 36 H 1.09004 * 110.72830 * 140.31216 * 11 10 8 37 37 H 1.08997 * 110.72586 * 263.59819 * 11 10 8 38 38 H 1.08998 * 110.66967 * 81.01745 * 12 11 10 39 39 H 1.09004 * 110.66927 * 203.99015 * 12 11 10 40 40 H 1.08992 * 109.47233 * 289.99929 * 14 13 8 41 41 H 1.08998 * 109.47153 * 50.00222 * 14 13 8 42 42 H 1.09000 * 109.46706 * 300.00201 * 15 14 13 43 43 H 1.08998 * 109.46816 * 60.00089 * 15 14 13 44 44 H 1.08992 * 109.47435 * 299.99854 * 16 15 14 45 45 H 1.08998 * 109.47395 * 60.00419 * 16 15 14 46 46 H 0.96996 * 120.00380 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2491 5 8 2.0141 -0.6844 1.1856 6 6 1.6534 -1.9683 1.3381 7 8 0.9567 -2.5027 0.5080 8 6 2.1174 -2.7432 2.5444 9 1 3.2068 -2.7659 2.5744 10 6 1.5706 -2.0921 3.8283 11 6 0.7294 -3.1936 4.5130 12 6 1.3068 -4.4975 3.9071 13 7 1.5858 -4.1226 2.4972 14 6 2.5586 -5.0412 1.8908 15 6 2.0863 -6.4838 2.0829 16 6 3.0998 -7.4406 1.4519 17 6 2.6349 -8.8615 1.6416 18 1 1.7089 -9.0620 2.1600 19 6 3.3917 -9.9054 1.1534 20 7 4.5191 -9.6613 0.5217 21 14 2.8150 -11.6666 1.3879 22 1 1.9688 -12.0681 0.2356 23 1 3.9936 -12.5662 1.4737 24 1 2.0244 -11.7660 2.6410 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2490 32 1 1.6767 -0.2076 -2.1391 33 1 3.1300 -0.7218 -1.2488 34 1 2.3918 -1.7856 4.4763 35 1 0.9432 -1.2359 3.5807 36 1 0.8734 -3.1736 5.5933 37 1 -0.3256 -3.0857 4.2614 38 1 2.2259 -4.7850 4.4178 39 1 0.5732 -5.3023 3.9559 40 1 2.6463 -4.8264 0.8259 41 1 3.5293 -4.9101 2.3691 42 1 1.9986 -6.6986 3.1479 43 1 1.1156 -6.6150 1.6046 44 1 3.1880 -7.2259 0.3869 45 1 4.0703 -7.3093 1.9305 46 1 5.0513 -10.3957 0.1779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000167641322.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -98.086244 kcal Electronic energy + Delta-G solvation = -23229.115968 eV Core-core repulsion = 19925.309852 eV Total energy + Delta-G solvation = -3303.806116 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.91992 -38.91132 -36.63258 -34.47962 -34.04094 -32.44890 -30.20868 -29.53695 -27.58836 -27.52785 -26.13313 -24.00498 -22.71405 -21.47039 -20.76682 -19.70383 -19.27845 -17.21893 -16.61332 -16.51289 -15.98050 -15.31896 -15.25055 -14.51376 -14.40595 -14.34730 -13.95579 -13.67667 -13.39076 -12.83390 -12.66113 -12.48654 -12.36177 -12.15615 -12.04955 -12.02024 -11.82191 -11.58284 -11.44084 -11.24509 -11.18611 -11.10101 -10.81669 -10.78570 -10.50142 -10.46020 -10.41760 -9.78432 -9.64247 -9.32216 -9.03381 -8.31400 -8.24837 -5.96668 -3.98650 2.37385 2.54835 3.34587 3.40416 3.43892 4.12910 4.47159 4.49884 4.51405 4.56323 4.60644 4.74639 4.82406 4.92614 5.22259 5.28091 5.36259 5.39148 5.42149 5.50206 5.55707 5.60492 5.64876 5.68595 5.69099 5.74626 5.78394 5.81051 5.91507 6.06103 6.12061 6.14037 6.18686 6.29767 6.55326 6.67568 6.76156 6.97589 7.18381 7.30790 7.71264 7.86288 8.01621 8.03661 8.46747 9.08359 9.65135 11.14860 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022698 B = 0.003425 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.268422 B = 8172.204116 C = 8952.568337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.357 6.357 6 C 0.469 3.531 7 O -0.475 6.475 8 C 0.071 3.929 9 H 0.087 0.913 10 C -0.116 4.116 11 C -0.126 4.126 12 C 0.039 3.961 13 N -0.498 5.498 14 C 0.049 3.951 15 C -0.106 4.106 16 C 0.022 3.978 17 C -0.518 4.518 18 H 0.055 0.945 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.049 0.951 43 H 0.057 0.943 44 H 0.016 0.984 45 H 0.013 0.987 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 22.980 4.147 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.081 3.919 3 C -0.196 4.196 4 C -0.242 4.242 5 O -0.276 6.276 6 C 0.309 3.691 7 O -0.359 6.359 8 C -0.039 4.039 9 H 0.105 0.895 10 C -0.154 4.154 11 C -0.164 4.164 12 C -0.088 4.088 13 N -0.223 5.223 14 C -0.078 4.078 15 C -0.144 4.144 16 C -0.015 4.015 17 C -0.556 4.556 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.104 0.896 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.091 0.909 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.950 22.722 3.437 23.738 hybrid contribution 0.572 -0.970 0.251 1.154 sum -5.379 21.751 3.688 22.708 Atomic orbital electron populations 1.22481 0.94146 1.04935 1.02382 1.22126 0.94330 0.92108 0.83324 1.21839 1.02177 0.92795 1.02821 1.22497 1.01699 1.03442 0.96513 1.86526 1.70280 1.25763 1.44994 1.23431 0.78033 0.80205 0.87400 1.90580 1.33703 1.69467 1.42152 1.21975 0.99535 0.91119 0.91298 0.89545 1.22334 1.00284 0.98657 0.94165 1.22555 1.00167 0.94077 0.99565 1.23235 1.00455 0.97677 0.87398 1.64362 1.42020 0.98830 1.17044 1.22532 0.91859 0.93882 0.99556 1.21692 1.01006 0.91213 1.00504 1.19065 0.93535 0.92991 0.95935 1.21243 1.06942 0.91321 1.36091 0.92671 1.25028 0.94985 0.99202 0.95308 1.69966 1.13694 1.31758 1.38195 0.86597 0.78164 0.84699 0.78553 1.20656 1.21276 1.19885 0.92206 0.91262 0.89572 0.91536 0.90523 0.91615 0.89548 0.91214 0.92030 0.90160 0.90619 0.90605 0.90644 0.93078 0.89023 0.90869 0.94968 0.93257 0.92395 0.96555 0.96818 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 2 C 0.12 1.26 1.13 -90.62 -0.10 1.16 16 3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16 4 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 5 O -0.36 -4.52 9.84 -39.26 -0.39 -4.91 16 6 C 0.47 6.81 6.39 36.00 0.23 7.04 16 7 O -0.47 -8.18 11.97 -18.75 -0.22 -8.40 16 8 C 0.07 0.96 2.98 -67.80 -0.20 0.76 16 9 H 0.09 1.11 7.57 -51.93 -0.39 0.71 16 10 C -0.12 -1.21 6.53 -25.38 -0.17 -1.37 16 11 C -0.13 -1.32 7.06 -24.87 -0.18 -1.49 16 12 C 0.04 0.53 5.10 -1.89 -0.01 0.52 16 13 N -0.50 -7.93 4.55 -223.94 -1.02 -8.95 16 14 C 0.05 0.90 5.03 -3.82 -0.02 0.88 16 15 C -0.11 -2.27 4.81 -26.73 -0.13 -2.40 16 16 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.13 5.89 -51.93 -0.31 0.83 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 1.22 5.89 -51.93 -0.31 0.91 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.76 7.67 -51.93 -0.40 0.36 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 39 H 0.09 1.29 7.67 -51.93 -0.40 0.89 16 40 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.03 0.57 7.81 -51.93 -0.41 0.16 16 42 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 362.00 15.07 5.46 5.46 Total: -1.00 -32.24 362.00 -9.07 -41.31 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -8.43 Total: -2.48 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.17 Total: -12.35 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: -0.28 Total: -35.65 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -0.61 Total: -13.31 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.24 -9.07 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167641322.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.779 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds