Wall clock time and date at job start Tue Mar 31 2020 06:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47459 * 2 1 4 4 C 1.52995 * 109.47372 * 180.02562 * 3 2 1 5 5 O 1.45200 * 109.47169 * 179.97438 * 4 3 2 6 6 C 1.34233 * 117.00134 * 179.97438 * 5 4 3 7 7 O 1.20818 * 119.99805 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00011 * 179.97438 * 6 5 4 9 9 H 1.08996 * 109.47473 * 300.00667 * 8 6 5 10 10 C 1.53005 * 109.46736 * 60.00845 * 8 6 5 11 11 N 1.46899 * 109.47058 * 180.02562 * 8 6 5 12 12 C 1.46897 * 110.99977 * 175.00462 * 11 8 6 13 13 C 1.50706 * 109.47018 * 288.68827 * 12 11 8 14 14 H 1.07993 * 120.00107 * 357.19587 * 13 12 11 15 15 C 1.37883 * 119.99999 * 177.20156 * 13 12 11 16 16 N 1.31513 * 119.99830 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99936 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47017 * 89.99792 * 17 15 13 19 19 H 1.48500 * 109.46959 * 209.99743 * 17 15 13 20 20 H 1.48500 * 109.47053 * 329.99529 * 17 15 13 21 21 C 1.46900 * 111.00258 * 298.95665 * 11 8 6 22 22 C 1.52993 * 109.47162 * 164.11787 * 21 11 8 23 23 C 1.53002 * 117.51665 * 116.41865 * 22 21 11 24 24 C 1.52995 * 60.00104 * 107.47877 * 23 22 21 25 25 H 1.09007 * 109.47395 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47116 * 299.99853 * 1 2 3 27 27 H 1.08999 * 109.47494 * 59.99842 * 1 2 3 28 28 H 1.09004 * 109.47116 * 240.00147 * 2 1 3 29 29 H 1.08999 * 109.47494 * 120.00157 * 2 1 3 30 30 H 1.08995 * 109.47159 * 59.99470 * 3 2 1 31 31 H 1.09004 * 109.46784 * 300.00033 * 3 2 1 32 32 H 1.09004 * 109.47434 * 60.00005 * 4 3 2 33 33 H 1.08999 * 109.47262 * 299.99962 * 4 3 2 34 34 H 1.09001 * 109.46768 * 180.02562 * 10 8 6 35 35 H 1.09001 * 109.46845 * 299.99462 * 10 8 6 36 36 H 1.08996 * 109.47285 * 59.99706 * 10 8 6 37 37 H 1.09006 * 109.47707 * 48.68650 * 12 11 8 38 38 H 1.09004 * 109.47397 * 168.68739 * 12 11 8 39 39 H 0.96996 * 119.99847 * 180.02562 * 16 15 13 40 40 H 1.09005 * 109.46741 * 44.12013 * 21 11 8 41 41 H 1.08999 * 109.47178 * 284.12143 * 21 11 8 42 42 H 1.08994 * 115.55253 * 330.71670 * 22 21 11 43 43 H 1.09007 * 117.49893 * 214.97281 * 23 22 21 44 44 H 1.09004 * 117.50298 * 359.97438 * 23 22 21 45 45 H 1.08995 * 117.50009 * 252.50478 * 24 23 22 46 46 H 1.09000 * 117.49580 * 107.49007 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 8 4.0540 2.8114 -0.0013 6 6 5.3847 2.9873 -0.0013 7 8 6.1207 2.0291 -0.0014 8 6 5.9607 4.3798 -0.0025 9 1 5.6248 4.9112 -0.8929 10 6 5.4892 5.1277 1.2462 11 7 7.4277 4.3029 -0.0030 12 6 8.0249 5.6396 -0.1236 13 6 7.8065 6.1632 -1.5198 14 1 7.3172 5.5452 -2.2579 15 6 8.2316 7.4314 -1.8548 16 7 8.8272 8.1841 -0.9558 17 14 7.9603 8.0807 -3.5852 18 1 6.6476 8.7715 -3.6545 19 1 9.0422 9.0377 -3.9300 20 1 7.9756 6.9490 -4.5466 21 6 7.9191 3.6132 1.1973 22 6 9.3775 3.2009 0.9875 23 6 10.4288 3.8303 1.9037 24 6 10.0389 2.3618 2.0825 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9330 0.9287 -0.8909 33 1 3.9337 0.9285 0.8891 34 1 5.9055 6.1351 1.2451 35 1 4.4007 5.1848 1.2461 36 1 5.8251 4.5963 2.1365 37 1 7.5566 6.3130 0.5943 38 1 9.0943 5.5794 0.0788 39 1 9.1259 9.0764 -1.1914 40 1 7.3133 2.7255 1.3799 41 1 7.8505 4.2826 2.0547 42 1 9.6652 2.9990 -0.0443 43 1 11.4082 4.0425 1.4747 44 1 10.0817 4.5387 2.6560 45 1 9.4353 2.1036 2.9526 46 1 10.7618 1.6077 1.7712 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174694949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:39 Heat of formation + Delta-G solvation = -69.919022 kcal Electronic energy + Delta-G solvation = -23098.561033 eV Core-core repulsion = 19795.976339 eV Total energy + Delta-G solvation = -3302.584693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.33371 -37.99570 -36.54291 -35.58603 -35.02642 -32.63081 -30.46678 -29.35350 -27.64846 -25.33415 -24.47129 -23.36519 -21.94104 -21.48031 -21.35765 -20.15630 -19.05427 -17.18344 -16.60854 -16.36794 -16.08729 -15.36333 -14.99673 -14.75520 -14.42023 -14.02191 -13.75581 -13.55430 -13.31863 -13.10640 -12.75108 -12.48123 -12.13518 -12.07304 -11.57627 -11.48367 -11.44507 -11.34149 -11.25403 -11.10677 -10.96768 -10.94428 -10.77002 -10.70680 -10.53642 -10.32997 -9.99842 -9.82188 -9.73391 -9.26457 -9.01981 -8.42802 -7.28452 -6.02862 -4.04327 2.64943 2.88050 3.31789 3.38612 3.43334 4.29557 4.43107 4.60858 4.66150 4.77195 4.80116 5.06055 5.17374 5.28321 5.31875 5.32551 5.36008 5.44171 5.52466 5.55556 5.56211 5.59905 5.67730 5.73788 5.83013 5.97217 5.98785 6.02111 6.05880 6.10617 6.20800 6.29047 6.33683 6.44303 6.52640 6.54368 6.74315 6.88127 7.26706 7.36895 7.80219 8.00538 8.13856 8.24827 8.51910 9.03300 9.60024 11.07299 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004577 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.895428 B = 6115.674549 C = 7799.099151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.120 4.120 4 C 0.065 3.935 5 O -0.362 6.362 6 C 0.465 3.535 7 O -0.493 6.493 8 C 0.102 3.898 9 H 0.128 0.872 10 C -0.179 4.179 11 N -0.516 5.516 12 C 0.192 3.808 13 C -0.510 4.510 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.897 5.897 17 Si 0.895 3.105 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.077 3.923 22 C -0.121 4.121 23 C -0.182 4.182 24 C -0.188 4.188 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.003 0.997 38 H 0.041 0.959 39 H 0.261 0.739 40 H 0.080 0.920 41 H 0.023 0.977 42 H 0.110 0.890 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.085 0.915 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.988 -12.275 5.402 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.157 4.157 4 C -0.009 4.009 5 O -0.279 6.279 6 C 0.307 3.693 7 O -0.379 6.379 8 C -0.008 4.008 9 H 0.145 0.855 10 C -0.238 4.238 11 N -0.240 5.240 12 C 0.068 3.932 13 C -0.549 4.549 14 H 0.080 0.920 15 C -0.144 4.144 16 N -0.536 5.536 17 Si 0.723 3.277 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.051 4.051 22 C -0.139 4.139 23 C -0.219 4.219 24 C -0.226 4.226 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.041 0.959 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.549 -12.690 5.007 17.245 hybrid contribution -0.177 0.796 -0.251 0.853 sum -10.726 -11.894 4.755 16.707 Atomic orbital electron populations 1.21748 0.95279 1.01718 1.02093 1.21437 0.96269 0.95829 1.02466 1.21598 0.92813 0.97560 1.03757 1.22980 0.94522 0.81085 1.02299 1.86516 1.25424 1.31431 1.84506 1.24205 0.79826 0.93365 0.71901 1.90583 1.59860 1.43114 1.44378 1.21221 0.90769 0.87465 1.01375 0.85497 1.22370 1.01858 1.02553 0.97059 1.62054 1.01449 1.23634 1.36911 1.19883 0.95206 0.81175 0.96972 1.21179 1.38292 0.98905 0.96477 0.91965 1.24957 0.95305 0.96817 0.97306 1.69952 1.40096 1.09811 1.33770 0.86547 0.77707 0.78743 0.84743 1.20715 1.21308 1.19785 1.21808 0.94041 0.97977 0.91286 1.22149 0.93350 1.02127 0.96307 1.22985 1.00334 0.95031 1.03512 1.22901 1.04067 0.94175 1.01436 0.92603 0.92574 0.92523 0.91641 0.91723 0.90856 0.90728 0.91463 0.91672 0.89741 0.91716 0.92995 0.97939 0.94128 0.92937 0.90207 0.95906 0.87162 0.89237 0.89313 0.89640 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.15 0.37 -0.64 16 2 C -0.12 -0.95 5.93 -26.74 -0.16 -1.10 16 3 C -0.12 -1.14 5.59 -26.73 -0.15 -1.29 16 4 C 0.07 0.81 5.47 37.16 0.20 1.01 16 5 O -0.36 -5.62 10.12 -39.27 -0.40 -6.02 16 6 C 0.46 8.42 6.83 36.00 0.25 8.67 16 7 O -0.49 -9.87 13.80 -18.74 -0.26 -10.13 16 8 C 0.10 1.96 2.76 -68.86 -0.19 1.77 16 9 H 0.13 2.57 7.19 -51.93 -0.37 2.20 16 10 C -0.18 -3.04 8.49 37.16 0.32 -2.73 16 11 N -0.52 -11.20 4.19 -229.47 -0.96 -12.16 16 12 C 0.19 4.80 4.45 -4.97 -0.02 4.78 16 13 C -0.51 -13.91 8.47 -34.44 -0.29 -14.21 16 14 H 0.06 1.70 7.58 -52.49 -0.40 1.30 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 17 Si 0.89 21.33 29.54 -169.99 -5.02 16.30 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.08 1.49 3.85 -3.83 -0.01 1.48 16 22 C -0.12 -2.24 4.96 -90.62 -0.45 -2.69 16 23 C -0.18 -3.03 10.09 -26.73 -0.27 -3.30 16 24 C -0.19 -2.86 10.25 -26.73 -0.27 -3.14 16 25 H 0.05 0.33 8.14 -51.92 -0.42 -0.09 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 33 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 34 H 0.08 1.58 6.31 -51.93 -0.33 1.25 16 35 H 0.06 0.95 8.11 -51.93 -0.42 0.53 16 36 H 0.05 0.83 6.76 -51.93 -0.35 0.48 16 37 H 0.00 0.08 6.00 -51.93 -0.31 -0.24 16 38 H 0.04 1.10 7.10 -51.93 -0.37 0.73 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.08 1.55 5.32 -51.93 -0.28 1.27 16 41 H 0.02 0.44 6.88 -51.93 -0.36 0.08 16 42 H 0.11 2.23 8.14 -51.93 -0.42 1.81 16 43 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 44 H 0.09 1.47 8.03 -51.93 -0.42 1.05 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -29.67 368.18 -9.37 -39.04 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -8.23 Total: 2.51 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -0.78 Total: -9.88 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: -0.22 Total: -37.38 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.66 Total: -16.14 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.67 -9.37 -39.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174694949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.875 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds