Wall clock time and date at job start Tue Mar 31 2020 06:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47160 * 2 1 4 4 C 1.53000 * 109.47062 * 239.99907 * 2 1 3 5 5 O 1.45199 * 109.47313 * 120.00485 * 2 1 3 6 6 C 1.34230 * 117.00134 * 59.99343 * 5 2 1 7 7 O 1.20820 * 120.00329 * 0.02562 * 6 5 2 8 8 C 1.50700 * 119.99775 * 180.02562 * 6 5 2 9 9 C 1.53000 * 109.47119 * 179.97438 * 8 6 5 10 10 N 1.46898 * 109.47348 * 180.02562 * 9 8 6 11 11 C 1.46894 * 111.00052 * 190.00416 * 10 9 8 12 12 C 1.50709 * 109.47267 * 71.30537 * 11 10 9 13 13 H 1.07997 * 119.99465 * 355.27019 * 12 11 10 14 14 C 1.37870 * 120.00000 * 175.27117 * 12 11 10 15 15 N 1.31514 * 120.00154 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 120.00101 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46963 * 60.00092 * 16 14 12 18 18 H 1.48500 * 109.46978 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47006 * 300.00241 * 16 14 12 20 20 C 1.46900 * 110.99934 * 66.05107 * 10 9 8 21 21 C 1.52996 * 109.47112 * 191.46009 * 20 10 9 22 22 C 1.53003 * 117.49547 * 243.12967 * 21 20 10 23 23 C 1.53000 * 60.00112 * 252.51090 * 22 21 20 24 24 H 1.09003 * 109.47236 * 299.99855 * 1 2 3 25 25 H 1.09003 * 109.47242 * 60.00077 * 1 2 3 26 26 H 1.09001 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47375 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46980 * 300.00084 * 3 2 1 29 29 H 1.08998 * 109.47060 * 60.00439 * 3 2 1 30 30 H 1.09002 * 109.47778 * 300.00165 * 4 2 1 31 31 H 1.09003 * 109.47078 * 59.99916 * 4 2 1 32 32 H 1.09001 * 109.47680 * 180.02562 * 4 2 1 33 33 H 1.09009 * 109.47052 * 60.00368 * 8 6 5 34 34 H 1.08995 * 109.47628 * 300.00766 * 8 6 5 35 35 H 1.09009 * 109.46822 * 60.00271 * 9 8 6 36 36 H 1.08995 * 109.47532 * 300.00869 * 9 8 6 37 37 H 1.09002 * 109.46991 * 191.30304 * 11 10 9 38 38 H 1.09001 * 109.47459 * 311.30161 * 11 10 9 39 39 H 0.97002 * 120.00323 * 179.97438 * 15 14 12 40 40 H 1.09005 * 109.46774 * 311.45553 * 20 10 9 41 41 H 1.09000 * 109.47139 * 71.45513 * 20 10 9 42 42 H 1.08995 * 115.55278 * 28.83511 * 21 20 10 43 43 H 1.08995 * 117.50195 * 359.97438 * 22 21 20 44 44 H 1.09004 * 117.49922 * 145.02395 * 22 21 20 45 45 H 1.09004 * 117.50117 * 252.51409 * 23 22 21 46 46 H 1.09002 * 117.50445 * 107.48868 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1855 6 6 1.6533 -1.9685 1.3378 7 8 0.9565 -2.5028 0.5078 8 6 2.1174 -2.7435 2.5440 9 6 1.5698 -4.1705 2.4750 10 7 2.0216 -4.9258 3.6511 11 6 1.7186 -6.3559 3.5067 12 6 2.6254 -6.9589 2.4649 13 1 3.3008 -6.3277 1.9064 14 6 2.5928 -8.3161 2.2248 15 7 1.7708 -9.0847 2.9053 16 14 3.7164 -9.0634 0.9330 17 1 5.1319 -8.7969 1.2942 18 1 3.4892 -10.5295 0.8678 19 1 3.4207 -8.4579 -0.3902 20 6 1.4319 -4.3845 4.8828 21 6 2.1337 -4.9973 6.0964 22 6 1.2904 -5.8565 7.0408 23 6 1.7498 -4.4642 7.4782 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9562 0.8900 30 1 1.6766 -1.7490 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.1300 -0.7217 -1.2491 33 1 1.7531 -2.2584 3.4498 34 1 3.2068 -2.7723 2.5604 35 1 1.9337 -4.6558 1.5693 36 1 0.4804 -4.1413 2.4589 37 1 1.8764 -6.8589 4.4607 38 1 0.6801 -6.4780 3.1990 39 1 1.7476 -10.0396 2.7362 40 1 1.5561 -3.3017 4.8997 41 1 0.3701 -4.6290 4.9152 42 1 3.1718 -5.2906 5.9407 43 1 0.2357 -5.9847 6.7977 44 1 1.7738 -6.7153 7.5065 45 1 2.5355 -4.4070 8.2317 46 1 0.9974 -3.6767 7.5227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177029978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:35 Heat of formation + Delta-G solvation = -69.371882 kcal Electronic energy + Delta-G solvation = -23024.160737 eV Core-core repulsion = 19721.599769 eV Total energy + Delta-G solvation = -3302.560968 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72137 -37.99432 -36.98749 -35.48641 -34.09786 -32.63074 -30.71970 -27.63931 -27.53809 -27.48698 -25.58909 -23.54649 -22.00688 -21.58480 -20.55622 -19.54947 -19.37178 -17.10521 -16.45317 -16.35988 -16.09520 -15.40613 -14.68244 -14.59957 -14.33512 -14.14169 -13.79894 -13.60027 -13.26296 -12.96749 -12.64340 -12.47440 -12.22340 -12.01030 -12.00021 -11.98228 -11.62712 -11.43119 -11.18867 -11.18098 -11.07065 -10.82297 -10.68073 -10.53592 -10.51109 -10.38673 -9.94903 -9.86440 -9.76658 -9.33246 -9.13144 -8.37418 -7.29074 -5.97528 -3.98301 2.43447 2.76252 3.37341 3.40843 3.44119 4.21149 4.46270 4.59987 4.64094 4.68952 4.79965 4.97310 5.21829 5.29871 5.32417 5.36386 5.37788 5.40237 5.44074 5.54582 5.58759 5.64815 5.73182 5.80085 5.85085 5.88788 5.90748 5.99229 6.05529 6.15577 6.20968 6.23143 6.29579 6.41380 6.48240 6.64504 6.69820 6.81182 7.32135 7.39207 7.83757 8.00515 8.14024 8.21646 8.56997 9.08164 9.65256 11.13128 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.012089 B = 0.004702 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.685349 B = 5953.538811 C = 7842.536911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.115 3.885 3 C -0.139 4.139 4 C -0.184 4.184 5 O -0.355 6.355 6 C 0.465 3.535 7 O -0.500 6.500 8 C -0.113 4.113 9 C 0.076 3.924 10 N -0.533 5.533 11 C 0.195 3.805 12 C -0.506 4.506 13 H 0.061 0.939 14 C 0.057 3.943 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.081 3.919 21 C -0.129 4.129 22 C -0.178 4.178 23 C -0.190 4.190 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.029 0.971 37 H 0.043 0.957 38 H -0.013 1.013 39 H 0.261 0.739 40 H 0.064 0.936 41 H 0.024 0.976 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.769 18.455 -0.150 18.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.079 3.921 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.274 6.274 6 C 0.308 3.692 7 O -0.388 6.388 8 C -0.151 4.151 9 C -0.052 4.052 10 N -0.258 5.258 11 C 0.070 3.930 12 C -0.544 4.544 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.048 4.048 21 C -0.148 4.148 22 C -0.215 4.215 23 C -0.227 4.227 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.047 0.953 37 H 0.061 0.939 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.131 0.869 43 H 0.107 0.893 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.540 18.164 -0.382 18.176 hybrid contribution -0.397 -0.611 -0.828 1.103 sum -0.937 17.553 -1.210 17.620 Atomic orbital electron populations 1.22488 0.94233 1.04886 1.02397 1.22117 0.94284 0.92195 0.83499 1.21837 1.02190 0.92851 1.02780 1.22494 1.01711 1.03426 0.96460 1.86564 1.70094 1.25922 1.44772 1.23877 0.77261 0.80155 0.87907 1.90581 1.35177 1.69674 1.43344 1.21552 1.04338 0.95855 0.93354 1.21731 0.96958 0.90080 0.96458 1.62103 1.58212 1.06092 0.99396 1.19751 0.94573 0.80503 0.98185 1.21126 1.21323 0.92269 1.19732 0.92053 1.24950 0.95841 0.97165 0.96500 1.69946 1.37507 1.05125 1.41241 0.86608 0.81194 0.77858 0.82033 1.20204 1.21412 1.20321 1.21677 0.95139 0.97820 0.90132 1.22237 1.00719 1.02395 0.89401 1.22966 1.00323 0.93816 1.04429 1.22942 1.03575 0.97553 0.98641 0.92158 0.91304 0.89625 0.91513 0.90609 0.91604 0.89524 0.91336 0.92000 0.88444 0.87096 0.88895 0.95308 0.93877 0.99530 0.92960 0.91799 0.95773 0.86927 0.89271 0.89118 0.89330 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 8.37 37.16 0.31 -1.72 16 2 C 0.12 1.32 1.13 -90.62 -0.10 1.22 16 3 C -0.14 -1.18 8.85 37.15 0.33 -0.85 16 4 C -0.18 -2.12 8.37 37.16 0.31 -1.81 16 5 O -0.36 -4.84 9.89 -39.26 -0.39 -5.23 16 6 C 0.46 7.14 7.27 36.01 0.26 7.40 16 7 O -0.50 -8.83 11.48 -18.74 -0.22 -9.04 16 8 C -0.11 -1.70 5.76 -27.88 -0.16 -1.86 16 9 C 0.08 1.47 4.09 -3.82 -0.02 1.45 16 10 N -0.53 -11.11 4.45 -236.07 -1.05 -12.16 16 11 C 0.19 5.01 4.60 -4.97 -0.02 4.98 16 12 C -0.51 -14.19 8.52 -34.44 -0.29 -14.48 16 13 H 0.06 1.70 7.37 -52.49 -0.39 1.32 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 16 Si 0.90 21.90 29.54 -169.99 -5.02 16.87 16 17 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.08 1.41 5.11 -3.83 -0.02 1.39 16 21 C -0.13 -2.16 4.73 -90.62 -0.43 -2.59 16 22 C -0.18 -2.82 10.05 -26.73 -0.27 -3.09 16 23 C -0.19 -2.56 10.25 -26.73 -0.27 -2.83 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 1.17 5.89 -51.93 -0.31 0.86 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.23 5.89 -51.93 -0.31 0.93 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.10 1.28 6.34 -51.92 -0.33 0.95 16 34 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.09 2.04 6.92 -51.92 -0.36 1.68 16 36 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 37 H 0.04 1.18 6.87 -51.93 -0.36 0.82 16 38 H -0.01 -0.37 8.06 -51.93 -0.42 -0.79 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.06 0.96 6.04 -51.93 -0.31 0.64 16 41 H 0.02 0.44 7.84 -51.93 -0.41 0.03 16 42 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 43 H 0.09 1.42 8.03 -51.93 -0.42 1.01 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -30.45 365.87 -9.12 -39.58 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.23 Total: 1.77 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -0.47 Total: -11.27 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.31 Total: -38.19 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.60 Total: -14.27 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.45 -9.12 -39.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177029978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.797 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds