Wall clock time and date at job start Tue Mar 31 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00281 * 2 1 4 4 C 1.52994 * 112.85318 * 295.74749 * 3 2 1 5 5 C 1.50704 * 109.47245 * 291.06297 * 4 3 2 6 6 O 1.21280 * 119.99695 * 355.01441 * 5 4 3 7 7 N 1.34771 * 119.99828 * 175.01537 * 5 4 3 8 8 C 1.46504 * 119.99624 * 185.33720 * 7 5 4 9 9 C 1.50701 * 109.46952 * 90.00522 * 8 7 5 10 10 H 1.08000 * 119.99871 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00131 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00175 * 179.97438 * 11 9 8 13 13 Si 1.86800 * 120.00090 * 359.97438 * 11 9 8 14 14 H 1.48491 * 109.47221 * 89.99699 * 13 11 9 15 15 H 1.48503 * 109.47099 * 210.00356 * 13 11 9 16 16 H 1.48506 * 109.47062 * 329.99759 * 13 11 9 17 17 C 1.46499 * 120.00417 * 5.34336 * 7 5 4 18 18 C 1.53000 * 109.47317 * 96.32723 * 17 7 5 19 19 C 1.52999 * 109.47300 * 175.40343 * 18 17 7 20 20 C 1.53002 * 109.47083 * 295.40483 * 18 17 7 21 21 C 1.53781 * 113.68922 * 67.01812 * 3 2 1 22 22 C 1.53778 * 87.08528 * 89.12378 * 21 3 2 23 23 C 1.53785 * 113.61462 * 164.54864 * 3 2 1 24 24 H 1.09000 * 109.47508 * 185.37406 * 1 2 3 25 25 H 1.09009 * 109.46863 * 305.37673 * 1 2 3 26 26 H 1.08999 * 109.47283 * 65.36837 * 1 2 3 27 27 H 1.08999 * 109.47496 * 171.06114 * 4 3 2 28 28 H 1.08999 * 109.47071 * 51.06063 * 4 3 2 29 29 H 1.09007 * 109.47218 * 210.00267 * 8 7 5 30 30 H 1.08995 * 109.47195 * 330.00559 * 8 7 5 31 31 H 0.96995 * 120.00434 * 179.97438 * 12 11 9 32 32 H 1.08998 * 109.47070 * 216.32487 * 17 7 5 33 33 H 1.08999 * 109.47113 * 336.32777 * 17 7 5 34 34 H 1.09005 * 109.47148 * 55.40093 * 18 17 7 35 35 H 1.09003 * 109.46616 * 60.00226 * 19 18 17 36 36 H 1.09004 * 109.47291 * 179.97438 * 19 18 17 37 37 H 1.08998 * 109.46940 * 300.00089 * 19 18 17 38 38 H 1.09004 * 109.47124 * 181.11288 * 20 18 17 39 39 H 1.08995 * 109.47475 * 301.11670 * 20 18 17 40 40 H 1.08997 * 109.47107 * 61.12058 * 20 18 17 41 41 H 1.08999 * 113.61864 * 203.67802 * 21 3 2 42 42 H 1.08998 * 113.61385 * 334.57705 * 21 3 2 43 43 H 1.08999 * 113.61914 * 270.88776 * 22 21 3 44 44 H 1.08995 * 113.61833 * 139.97822 * 22 21 3 45 45 H 1.09004 * 113.61008 * 25.35168 * 23 3 2 46 46 H 1.08997 * 113.61365 * 156.25260 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6925 2.0974 -1.2699 5 6 2.4090 1.4768 -2.4415 6 8 3.1758 0.5541 -2.2637 7 7 2.1977 1.9472 -3.6866 8 6 2.8020 1.2711 -4.8373 9 6 1.8598 0.2122 -5.3494 10 1 0.9062 0.0585 -4.8663 11 6 2.2153 -0.5604 -6.4346 12 7 1.3933 -1.4849 -6.8812 13 14 3.8644 -0.2942 -7.2707 14 1 4.8882 -1.1603 -6.6331 15 1 3.7509 -0.6394 -8.7105 16 1 4.2650 1.1292 -7.1332 17 6 1.3640 3.1345 -3.8895 18 6 2.2568 4.3722 -3.9985 19 6 1.3965 5.5947 -4.3243 20 6 2.9808 4.5975 -2.6696 21 6 1.7593 2.0935 1.2965 22 6 3.0515 1.4602 1.8388 23 6 3.5016 1.3157 0.3754 24 1 -0.3634 -1.0231 0.0962 25 1 -0.3633 0.5950 0.8380 26 1 -0.3634 0.4283 -0.9341 27 1 2.0226 3.1289 -1.1470 28 1 0.6177 2.0789 -1.4501 29 1 2.9945 1.9984 -5.6262 30 1 3.7404 0.8067 -4.5343 31 1 1.6432 -2.0282 -7.6449 32 1 0.7870 3.0209 -4.8072 33 1 0.6845 3.2500 -3.0450 34 1 2.9903 4.2224 -4.7909 35 1 0.6632 5.7444 -3.5318 36 1 2.0326 6.4765 -4.4015 37 1 0.8808 5.4342 -5.2710 38 1 3.6017 5.4905 -2.7409 39 1 2.2474 4.7274 -1.8738 40 1 3.6091 3.7350 -2.4474 41 1 1.8225 3.1743 1.1697 42 1 0.8622 1.7808 1.8308 43 1 2.8924 0.5069 2.3428 44 1 3.6656 2.1493 2.4184 45 1 4.0110 0.3750 0.1661 46 1 4.0411 2.1838 -0.0032 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234580277.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:12 Heat of formation + Delta-G solvation = -62.773469 kcal Electronic energy + Delta-G solvation = -24382.589030 eV Core-core repulsion = 21080.314191 eV Total energy + Delta-G solvation = -3302.274839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.28966 -38.61877 -36.25472 -35.37549 -33.67437 -32.24350 -30.44456 -27.91136 -27.12357 -26.87637 -25.59557 -25.33106 -23.42344 -21.75907 -20.27374 -19.34053 -18.20700 -16.87428 -16.58782 -16.23581 -15.76893 -15.05694 -14.99266 -14.74229 -14.47296 -14.03880 -13.98003 -13.62247 -13.24132 -13.12176 -12.66840 -12.36052 -12.31306 -12.19867 -11.86996 -11.69694 -11.66712 -11.42154 -11.15276 -10.98349 -10.88528 -10.85905 -10.75212 -10.70855 -10.45886 -10.45155 -10.09267 -9.94480 -9.48694 -9.24949 -8.77947 -8.54983 -7.59884 -6.05136 -4.03139 3.31516 3.37409 3.39621 3.45647 3.80411 3.96464 4.42883 4.55044 4.68858 4.89471 4.95070 4.98445 5.06494 5.13086 5.27674 5.34230 5.39778 5.46579 5.52719 5.55286 5.63623 5.65070 5.71603 5.74316 5.77800 5.81693 5.87304 5.90420 5.96236 6.00774 6.12760 6.20975 6.31579 6.36707 6.39329 6.41754 6.47027 6.77620 7.02676 7.44320 7.51118 7.66359 8.35755 8.52229 8.97846 9.11776 9.55974 11.08422 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.006252 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.257216 B = 4477.147677 C = 5521.603916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.346 6.346 3 C 0.112 3.888 4 C -0.167 4.167 5 C 0.515 3.485 6 O -0.526 6.526 7 N -0.596 5.596 8 C 0.217 3.783 9 C -0.526 4.526 10 H 0.073 0.927 11 C 0.072 3.928 12 N -0.899 5.899 13 Si 0.876 3.124 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.116 3.884 18 C -0.117 4.117 19 C -0.142 4.142 20 C -0.149 4.149 21 C -0.166 4.166 22 C -0.138 4.138 23 C -0.109 4.109 24 H 0.085 0.915 25 H 0.038 0.962 26 H 0.042 0.958 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.027 0.973 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.085 0.915 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.786 13.930 13.576 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.264 6.264 3 C 0.072 3.928 4 C -0.208 4.208 5 C 0.301 3.699 6 O -0.402 6.402 7 N -0.328 5.328 8 C 0.097 3.903 9 C -0.564 4.564 10 H 0.091 0.909 11 C -0.130 4.130 12 N -0.537 5.537 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 C -0.009 4.009 18 C -0.137 4.137 19 C -0.200 4.200 20 C -0.206 4.206 21 C -0.203 4.203 22 C -0.176 4.176 23 C -0.147 4.147 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.105 0.895 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.277 13.098 13.510 18.819 hybrid contribution 0.332 0.269 -0.741 0.855 sum 0.055 13.367 12.769 18.486 Atomic orbital electron populations 1.22739 0.81928 1.02551 0.99749 1.88039 1.18846 1.25082 1.94460 1.22193 0.95855 0.83667 0.91132 1.22461 1.02055 1.01300 0.94947 1.20069 0.82701 0.83522 0.83574 1.90669 1.36466 1.28540 1.84550 1.47868 1.50102 1.27867 1.06915 1.19590 0.94963 0.92691 0.83088 1.21340 1.04369 1.16834 1.13876 0.90898 1.24850 0.96818 0.94643 0.96698 1.69898 1.36348 1.21768 1.25731 0.86860 0.84908 0.79176 0.78800 1.19932 1.21145 1.19111 1.21531 0.92638 0.84108 1.02587 1.21575 0.98524 0.95212 0.98390 1.21760 0.99597 0.97090 1.01585 1.21975 1.00162 1.01495 0.96961 1.23584 0.98994 1.00046 0.97719 1.22815 0.96792 1.00901 0.97054 1.22827 0.94187 1.03530 0.94120 0.89686 0.94323 0.93962 0.87990 0.89533 0.95542 0.94591 0.92640 0.90109 0.91411 0.90647 0.92808 0.92827 0.92376 0.92916 0.92777 0.92419 0.89482 0.91149 0.89987 0.91626 0.89676 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.54 101.05 1.07 1.44 16 2 O -0.35 -6.07 10.31 -36.49 -0.38 -6.45 16 3 C 0.11 1.68 0.39 -89.81 -0.04 1.64 16 4 C -0.17 -2.53 3.47 -27.88 -0.10 -2.62 16 5 C 0.51 10.52 6.13 -10.99 -0.07 10.45 16 6 O -0.53 -13.00 14.24 4.30 0.06 -12.94 16 7 N -0.60 -12.24 2.23 -175.06 -0.39 -12.63 16 8 C 0.22 5.38 4.29 -5.19 -0.02 5.36 16 9 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 10 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 11 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 12 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 13 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 14 H -0.27 -6.95 7.11 56.52 0.40 -6.54 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 17 C 0.12 1.83 4.91 -4.04 -0.02 1.81 16 18 C -0.12 -1.53 3.12 -90.62 -0.28 -1.82 16 19 C -0.14 -1.47 9.19 37.16 0.34 -1.13 16 20 C -0.15 -1.75 7.61 37.16 0.28 -1.47 16 21 C -0.17 -1.84 7.18 -25.92 -0.19 -2.03 16 22 C -0.14 -1.59 8.02 -25.92 -0.21 -1.80 16 23 C -0.11 -1.59 6.06 -25.91 -0.16 -1.75 16 24 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 25 H 0.04 0.43 6.65 -51.92 -0.35 0.08 16 26 H 0.04 0.61 6.88 -51.93 -0.36 0.25 16 27 H 0.10 1.26 4.64 -51.93 -0.24 1.01 16 28 H 0.09 1.23 5.94 -51.93 -0.31 0.92 16 29 H 0.03 0.63 7.04 -51.93 -0.37 0.26 16 30 H 0.04 0.96 6.78 -51.93 -0.35 0.61 16 31 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 32 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 33 H 0.07 0.91 6.11 -51.93 -0.32 0.59 16 34 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.54 6.62 -51.93 -0.34 0.20 16 40 H 0.06 0.80 6.53 -51.93 -0.34 0.46 16 41 H 0.09 0.81 8.00 -51.93 -0.42 0.39 16 42 H 0.07 0.73 6.79 -51.93 -0.35 0.38 16 43 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.46 7.97 -51.93 -0.41 1.05 16 46 H 0.09 1.16 8.10 -51.93 -0.42 0.74 16 LS Contribution 352.87 15.07 5.32 5.32 Total: -1.00 -34.50 352.87 -7.07 -41.57 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -7.96 Total: 0.65 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 0.17 Total: -5.54 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.38 Total: -39.95 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.31 Total: -19.38 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.50 -7.07 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234580277.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.203 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds