Wall clock time and date at job start Tue Mar 31 2020 06:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.09003 * 109.47127 * 55.00238 * 3 2 1 5 5 C 1.52999 * 109.47240 * 295.00219 * 3 2 1 6 6 C 1.53006 * 109.47129 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46946 * 60.00322 * 6 5 3 8 8 C 1.52999 * 109.46944 * 299.99792 * 7 6 5 9 9 C 1.52996 * 109.47225 * 175.00032 * 3 2 1 10 10 H 1.08995 * 109.47594 * 300.00426 * 9 3 2 11 11 O 1.42906 * 109.46894 * 60.00204 * 9 3 2 12 12 C 1.42902 * 113.99896 * 209.99966 * 11 9 3 13 13 C 1.50697 * 109.47061 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99998 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 H 1.09000 * 109.46922 * 299.99782 * 1 2 3 28 28 H 1.08993 * 109.47449 * 59.99645 * 1 2 3 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46778 * 239.99682 * 2 1 3 31 31 H 1.08999 * 109.47192 * 120.00683 * 2 1 3 32 32 H 1.09003 * 109.47076 * 300.00050 * 5 3 2 33 33 H 1.09002 * 109.46878 * 59.99973 * 5 3 2 34 34 H 1.09000 * 109.46790 * 180.02562 * 6 5 3 35 35 H 1.08993 * 109.46857 * 300.00115 * 6 5 3 36 36 H 1.09003 * 109.47269 * 59.99716 * 7 6 5 37 37 H 1.08999 * 109.46969 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.47076 * 300.00043 * 8 7 6 39 39 H 1.09002 * 109.46878 * 180.02562 * 8 7 6 40 40 H 1.08996 * 109.47457 * 59.99856 * 12 11 9 41 41 H 1.09000 * 109.46988 * 299.99842 * 12 11 9 42 42 H 0.96996 * 120.00288 * 0.02562 * 15 13 12 43 43 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 44 44 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 45 45 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 46 46 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3070 7 6 3.6696 3.5715 -1.1811 8 6 4.0744 2.8874 0.1262 9 6 3.5648 1.4442 0.1257 10 1 3.8533 0.9568 1.0570 11 8 4.1346 0.7375 -0.9780 12 6 5.3745 0.0935 -0.6782 13 6 5.8819 -0.6163 -1.9068 14 8 5.2446 -0.5745 -2.9379 15 7 7.0443 -1.2968 -1.8602 16 6 7.5378 -1.9865 -3.0548 17 1 7.2769 -1.4089 -3.9415 18 6 6.8986 -3.3738 -3.1434 19 6 9.0357 -2.1281 -2.9703 20 1 9.5571 -1.8256 -2.0741 21 6 9.7408 -2.6437 -4.0371 22 7 10.9683 -3.0826 -3.8637 23 14 8.9551 -2.7117 -5.7305 24 1 9.9159 -3.2987 -6.6987 25 1 7.7321 -3.5522 -5.6753 26 1 8.5928 -1.3383 -6.1636 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0699 1.5874 -2.1492 33 1 0.5489 2.1252 -1.3968 34 1 1.8561 4.0567 -2.2382 35 1 1.7099 4.1079 -0.4652 36 1 4.1045 3.0327 -2.0229 37 1 4.0326 4.5992 -1.1814 38 1 3.6395 3.4262 0.9680 39 1 5.1607 2.8894 0.2161 40 1 5.2240 -0.6295 0.1235 41 1 6.1042 0.8393 -0.3626 42 1 7.5541 -1.3300 -1.0357 43 1 5.8277 -3.2699 -3.3174 44 1 7.3484 -3.9292 -3.9665 45 1 7.0646 -3.9106 -2.2093 46 1 11.4029 -2.9799 -3.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248633634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:30 Heat of formation + Delta-G solvation = -118.675957 kcal Electronic energy + Delta-G solvation = -23332.104622 eV Core-core repulsion = 20027.405670 eV Total energy + Delta-G solvation = -3304.698953 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88820 -38.77840 -36.13491 -34.82460 -34.01914 -32.45163 -30.46954 -29.91642 -29.00973 -26.95472 -24.79088 -23.98785 -22.47980 -21.18153 -20.70647 -19.69193 -19.55226 -17.86761 -16.56782 -16.42425 -15.89663 -15.43230 -15.08214 -14.70844 -14.32838 -14.17685 -13.80216 -13.42430 -13.24155 -13.04856 -12.78022 -12.63573 -12.61753 -12.22591 -12.09760 -11.83791 -11.66795 -11.60878 -11.40726 -11.35376 -11.12461 -10.77219 -10.55441 -10.47213 -10.40748 -10.02297 -9.99943 -9.78384 -9.40188 -9.14043 -9.04615 -8.32539 -8.17332 -6.58865 -4.22279 3.23877 3.30108 3.39874 3.45969 3.61512 4.31698 4.42163 4.51895 4.60488 4.73186 4.96863 5.02466 5.10618 5.14360 5.17289 5.22828 5.31974 5.33608 5.35599 5.40697 5.45067 5.55517 5.61906 5.64199 5.75155 5.83197 5.89051 6.03529 6.11158 6.13042 6.18715 6.28281 6.32428 6.39760 6.49772 6.56539 6.68472 6.96801 7.15242 7.32318 7.42544 7.65909 8.22881 8.47454 8.70794 8.98882 9.46666 10.81969 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003632 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.464481 B = 7708.076177 C = 7962.735575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.078 4.078 4 H 0.076 0.924 5 C -0.114 4.114 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.090 3.910 10 H 0.058 0.942 11 O -0.345 6.345 12 C 0.042 3.958 13 C 0.503 3.497 14 O -0.536 6.536 15 N -0.703 5.703 16 C 0.243 3.757 17 H 0.041 0.959 18 C -0.160 4.160 19 C -0.618 4.618 20 H 0.061 0.939 21 C 0.039 3.961 22 N -0.898 5.898 23 Si 1.042 2.958 24 H -0.283 1.283 25 H -0.271 1.271 26 H -0.280 1.280 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.392 0.608 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.043 0.957 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.568 10.346 11.110 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.097 4.097 4 H 0.094 0.906 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.178 4.178 9 C 0.032 3.968 10 H 0.076 0.924 11 O -0.262 6.262 12 C -0.038 4.038 13 C 0.287 3.713 14 O -0.413 6.413 15 N -0.353 5.353 16 C 0.140 3.860 17 H 0.059 0.941 18 C -0.219 4.219 19 C -0.656 4.656 20 H 0.079 0.921 21 C -0.168 4.168 22 N -0.531 5.531 23 Si 0.870 3.130 24 H -0.209 1.209 25 H -0.197 1.197 26 H -0.206 1.206 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.225 0.775 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.841 9.840 8.605 22.118 hybrid contribution 0.324 0.563 2.493 2.576 sum -17.517 10.402 11.098 23.200 Atomic orbital electron populations 1.21810 0.96101 1.01432 1.01556 1.21531 0.95486 0.96090 1.02684 1.21245 0.92922 0.96688 0.98802 0.90552 1.21576 1.00018 0.95457 0.98074 1.21507 0.95851 0.96847 1.01190 1.21431 0.95915 0.99782 0.98284 1.22029 1.00980 0.96183 0.98627 1.22178 0.93562 0.91662 0.89389 0.92398 1.88072 1.35166 1.68254 1.34749 1.22315 0.88038 0.96746 0.96710 1.20145 0.82001 0.79878 0.89322 1.90667 1.56964 1.61604 1.32047 1.46198 1.21412 1.51742 1.15965 1.18998 0.94371 0.88617 0.83999 0.94122 1.22499 0.98321 0.99653 1.01415 1.22078 0.90190 1.49240 1.04046 0.92065 1.25693 0.95941 0.91848 1.03287 1.70888 1.14780 1.39216 1.28221 0.84077 0.75781 0.77628 0.75549 1.20880 1.19716 1.20579 0.93184 0.92460 0.92947 0.90688 0.92524 0.90500 0.92194 0.92196 0.92656 0.90724 0.92555 0.91397 0.91877 0.91071 0.91048 0.77495 0.95143 0.91908 0.93757 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.67 37.16 0.36 -0.97 16 2 C -0.12 -1.24 5.19 -26.73 -0.14 -1.38 16 3 C -0.08 -0.78 2.02 -90.63 -0.18 -0.96 16 4 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.11 -1.21 4.81 -26.73 -0.13 -1.34 16 6 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 7 C -0.12 -1.27 5.78 -26.73 -0.15 -1.42 16 8 C -0.14 -1.41 5.63 -26.71 -0.15 -1.56 16 9 C 0.09 0.99 2.35 -26.71 -0.06 0.93 16 10 H 0.06 0.56 7.79 -51.93 -0.40 0.15 16 11 O -0.34 -5.07 7.60 -55.14 -0.42 -5.49 16 12 C 0.04 0.60 6.23 36.00 0.22 0.83 16 13 C 0.50 9.86 7.87 -10.99 -0.09 9.78 16 14 O -0.54 -12.76 16.16 -14.35 -0.23 -12.99 16 15 N -0.70 -14.32 5.07 -54.93 -0.28 -14.59 16 16 C 0.24 5.93 2.14 -69.08 -0.15 5.78 16 17 H 0.04 1.08 6.23 -51.93 -0.32 0.76 16 18 C -0.16 -3.68 9.16 37.16 0.34 -3.34 16 19 C -0.62 -16.79 9.00 -34.44 -0.31 -17.10 16 20 H 0.06 1.73 7.96 -52.49 -0.42 1.31 16 21 C 0.04 1.10 5.29 -17.82 -0.09 1.00 16 22 N -0.90 -26.78 13.70 55.43 0.76 -26.02 16 23 Si 1.04 25.34 26.29 -169.99 -4.47 20.87 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.19 5.76 56.52 0.33 -5.86 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.50 6.56 -51.93 -0.34 0.16 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.96 7.84 -51.93 -0.41 0.56 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 1.04 7.68 -51.93 -0.40 0.64 16 33 H 0.06 0.56 6.57 -51.93 -0.34 0.22 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 1.01 7.68 -51.93 -0.40 0.62 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.64 7.88 -51.93 -0.41 0.23 16 40 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 41 H 0.07 0.88 7.88 -51.93 -0.41 0.47 16 42 H 0.39 6.94 8.53 -40.82 -0.35 6.59 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.06 1.47 4.88 -51.93 -0.25 1.22 16 45 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 46 H 0.27 7.90 8.73 -40.82 -0.36 7.55 16 LS Contribution 355.55 15.07 5.36 5.36 Total: -1.00 -31.70 355.55 -8.30 -40.00 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -8.33 Total: 3.91 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -0.69 Total: -11.04 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.48 Total: -40.62 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.65 Total: -18.48 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -4.47 Total: 20.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.70 -8.30 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248633634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.677 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds