Wall clock time and date at job start Tue Mar 31 2020 06:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47391 * 2 1 4 4 H 1.09003 * 109.47127 * 55.00238 * 3 2 1 5 5 C 1.52999 * 109.47240 * 295.00219 * 3 2 1 6 6 C 1.53006 * 109.47129 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.46946 * 60.00322 * 6 5 3 8 8 C 1.52999 * 109.46944 * 299.99792 * 7 6 5 9 9 C 1.52996 * 109.47225 * 175.00032 * 3 2 1 10 10 H 1.08995 * 109.47594 * 300.00426 * 9 3 2 11 11 O 1.42906 * 109.46894 * 60.00204 * 9 3 2 12 12 C 1.42902 * 113.99896 * 209.99966 * 11 9 3 13 13 C 1.50697 * 109.47061 * 180.02562 * 12 11 9 14 14 O 1.21280 * 119.99998 * 0.02562 * 13 12 11 15 15 N 1.34775 * 119.99887 * 179.97438 * 13 12 11 16 16 C 1.46502 * 120.00053 * 180.02562 * 15 13 12 17 17 H 1.08996 * 109.47077 * 34.99783 * 16 15 13 18 18 C 1.53008 * 109.47016 * 275.00255 * 16 15 13 19 19 C 1.50695 * 109.47337 * 155.00261 * 16 15 13 20 20 H 1.07998 * 120.00418 * 5.62270 * 19 16 15 21 21 C 1.37879 * 120.00201 * 185.62926 * 19 16 15 22 22 N 1.31514 * 120.00393 * 197.18198 * 21 19 16 23 23 Si 1.86804 * 119.99786 * 17.45333 * 21 19 16 24 24 H 1.48502 * 109.47029 * 179.72709 * 23 21 19 25 25 H 1.48503 * 109.46948 * 299.72609 * 23 21 19 26 26 H 1.48492 * 109.47033 * 59.72641 * 23 21 19 27 27 H 1.09000 * 109.46922 * 299.99782 * 1 2 3 28 28 H 1.08993 * 109.47449 * 59.99645 * 1 2 3 29 29 H 1.08999 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46778 * 239.99682 * 2 1 3 31 31 H 1.08999 * 109.47192 * 120.00683 * 2 1 3 32 32 H 1.09003 * 109.47076 * 300.00050 * 5 3 2 33 33 H 1.09002 * 109.46878 * 59.99973 * 5 3 2 34 34 H 1.09000 * 109.46790 * 180.02562 * 6 5 3 35 35 H 1.08993 * 109.46857 * 300.00115 * 6 5 3 36 36 H 1.09003 * 109.47269 * 59.99716 * 7 6 5 37 37 H 1.08999 * 109.46969 * 179.97438 * 7 6 5 38 38 H 1.09003 * 109.47076 * 300.00043 * 8 7 6 39 39 H 1.09002 * 109.46878 * 180.02562 * 8 7 6 40 40 H 1.08996 * 109.47457 * 59.99856 * 12 11 9 41 41 H 1.09000 * 109.46988 * 299.99842 * 12 11 9 42 42 H 0.96996 * 120.00288 * 0.02562 * 15 13 12 43 43 H 1.08994 * 109.46957 * 66.33318 * 18 16 15 44 44 H 1.09002 * 109.47065 * 186.34089 * 18 16 15 45 45 H 1.09000 * 109.46665 * 306.33574 * 18 16 15 46 46 H 0.97001 * 119.99221 * 355.17115 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3073 6 6 2.1448 3.5692 -1.3070 7 6 3.6696 3.5715 -1.1811 8 6 4.0744 2.8874 0.1262 9 6 3.5648 1.4442 0.1257 10 1 3.8533 0.9568 1.0570 11 8 4.1346 0.7375 -0.9780 12 6 5.3745 0.0935 -0.6782 13 6 5.8819 -0.6163 -1.9068 14 8 5.2446 -0.5745 -2.9379 15 7 7.0443 -1.2968 -1.8602 16 6 7.5378 -1.9865 -3.0548 17 1 7.2769 -1.4089 -3.9415 18 6 6.8986 -3.3738 -3.1434 19 6 9.0357 -2.1281 -2.9703 20 1 9.5571 -1.8256 -2.0741 21 6 9.7408 -2.6437 -4.0371 22 7 10.9683 -3.0826 -3.8637 23 14 8.9551 -2.7117 -5.7305 24 1 9.9159 -3.2987 -6.6987 25 1 7.7321 -3.5522 -5.6753 26 1 8.5928 -1.3383 -6.1636 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0699 1.5874 -2.1492 33 1 0.5489 2.1252 -1.3968 34 1 1.8561 4.0567 -2.2382 35 1 1.7099 4.1079 -0.4652 36 1 4.1045 3.0327 -2.0229 37 1 4.0326 4.5992 -1.1814 38 1 3.6395 3.4262 0.9680 39 1 5.1607 2.8894 0.2161 40 1 5.2240 -0.6295 0.1235 41 1 6.1042 0.8393 -0.3626 42 1 7.5541 -1.3300 -1.0357 43 1 5.8277 -3.2699 -3.3174 44 1 7.3484 -3.9292 -3.9665 45 1 7.0646 -3.9106 -2.2093 46 1 11.4029 -2.9799 -3.0026 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248633634.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:29 Heat of formation + Delta-G solvation = -138.258940 kcal Electronic energy + Delta-G solvation = -23332.953804 eV Core-core repulsion = 20027.405670 eV Total energy + Delta-G solvation = -3305.548135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98060 -40.17765 -37.27910 -36.59936 -34.79120 -34.48684 -31.99927 -31.01516 -29.86345 -28.22165 -26.85831 -24.76593 -23.30350 -22.90515 -21.57797 -21.29542 -20.53483 -19.84892 -18.07244 -17.59705 -17.00015 -16.69254 -16.42763 -15.73937 -15.65030 -15.24995 -15.15782 -14.73510 -14.58158 -14.42704 -14.18528 -14.04078 -13.69958 -13.55663 -13.48454 -13.32596 -12.93392 -12.72046 -12.44602 -12.38789 -12.19847 -11.97746 -11.92131 -11.69043 -11.56743 -11.40945 -11.27116 -11.18085 -10.78092 -10.71958 -10.49020 -10.31567 -9.94256 -8.82174 -6.46484 1.44083 1.49208 1.68144 1.70514 2.04535 2.39400 2.99053 3.14617 3.69471 3.79679 3.88721 3.92098 4.18193 4.20407 4.24134 4.28282 4.36510 4.47492 4.49333 4.53393 4.59051 4.63935 4.70621 4.76412 4.78953 4.87705 4.91267 4.96354 5.06538 5.06719 5.17222 5.26681 5.31077 5.34127 5.36458 5.41402 5.47426 5.53442 5.59461 5.62530 5.65832 5.98948 6.26850 6.51077 6.82639 7.26031 7.41784 8.57934 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025323 B = 0.003632 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.464481 B = 7708.076177 C = 7962.735575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.076 4.076 4 H 0.104 0.896 5 C -0.112 4.112 6 C -0.114 4.114 7 C -0.118 4.118 8 C -0.138 4.138 9 C 0.083 3.917 10 H 0.079 0.921 11 O -0.373 6.373 12 C 0.053 3.947 13 C 0.499 3.501 14 O -0.583 6.583 15 N -0.702 5.702 16 C 0.245 3.755 17 H 0.019 0.981 18 C -0.152 4.152 19 C -0.613 4.613 20 H 0.044 0.956 21 C -0.004 4.004 22 N -0.926 5.926 23 Si 1.072 2.928 24 H -0.279 1.279 25 H -0.249 1.249 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.406 0.594 43 H 0.035 0.965 44 H 0.056 0.944 45 H 0.054 0.946 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.390 11.305 13.167 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.094 4.094 4 H 0.122 0.878 5 C -0.149 4.149 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.176 4.176 9 C 0.025 3.975 10 H 0.097 0.903 11 O -0.292 6.292 12 C -0.027 4.027 13 C 0.285 3.715 14 O -0.463 6.463 15 N -0.353 5.353 16 C 0.140 3.860 17 H 0.037 0.963 18 C -0.211 4.211 19 C -0.651 4.651 20 H 0.062 0.938 21 C -0.205 4.205 22 N -0.561 5.561 23 Si 0.894 3.106 24 H -0.205 1.205 25 H -0.173 1.173 26 H -0.202 1.202 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.122 0.878 41 H 0.114 0.886 42 H 0.241 0.759 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.666 10.805 10.712 24.865 hybrid contribution 0.873 0.325 1.906 2.122 sum -18.793 11.130 12.618 25.225 Atomic orbital electron populations 1.21788 0.94897 1.01706 1.02236 1.21489 0.96570 0.96193 1.01359 1.21296 0.92489 0.96518 0.99081 0.87817 1.21529 1.00470 0.95686 0.97250 1.21501 0.95109 0.96398 1.02090 1.21419 0.96585 0.99936 0.97632 1.22045 1.01088 0.95682 0.98753 1.22470 0.93941 0.91999 0.89058 0.90261 1.88069 1.35201 1.68876 1.37041 1.22231 0.88732 0.97663 0.94044 1.21075 0.80911 0.78956 0.90514 1.90643 1.58161 1.63108 1.34382 1.46017 1.22138 1.51758 1.15345 1.18717 0.92754 0.89573 0.84970 0.96329 1.22369 0.98381 0.98559 1.01785 1.22242 0.91815 1.47960 1.03114 0.93802 1.26772 0.95844 0.91565 1.06293 1.70984 1.15879 1.41399 1.27826 0.83692 0.76139 0.78267 0.72487 1.20497 1.17320 1.20212 0.91374 0.92824 0.92976 0.94154 0.91642 0.94436 0.91047 0.92501 0.90266 0.94509 0.91526 0.88722 0.92028 0.87844 0.88632 0.75870 0.94552 0.92549 0.92646 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.67 71.98 0.70 -1.61 16 2 C -0.12 -2.26 5.19 30.59 0.16 -2.10 16 3 C -0.08 -1.32 2.02 -10.80 -0.02 -1.34 16 4 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.11 -2.27 4.81 30.60 0.15 -2.12 16 6 C -0.11 -2.03 5.92 30.60 0.18 -1.85 16 7 C -0.12 -2.42 5.78 30.59 0.18 -2.25 16 8 C -0.14 -2.37 5.63 30.61 0.17 -2.20 16 9 C 0.08 1.59 2.35 30.61 0.07 1.67 16 10 H 0.08 1.20 7.79 -2.39 -0.02 1.18 16 11 O -0.37 -10.62 7.60 -129.94 -0.99 -11.61 16 12 C 0.05 1.41 6.23 71.23 0.44 1.86 16 13 C 0.50 19.30 7.87 87.66 0.69 19.98 16 14 O -0.58 -28.18 16.16 16.01 0.26 -27.92 16 15 N -0.70 -28.06 5.07 -446.10 -2.26 -30.32 16 16 C 0.24 11.87 2.14 44.25 0.09 11.96 16 17 H 0.02 1.00 6.23 -2.39 -0.01 0.99 16 18 C -0.15 -6.86 9.16 71.98 0.66 -6.20 16 19 C -0.61 -33.51 9.00 25.60 0.23 -33.28 16 20 H 0.04 2.50 7.96 -2.91 -0.02 2.48 16 21 C 0.00 -0.21 5.29 84.66 0.45 0.24 16 22 N -0.93 -55.91 13.70 21.45 0.29 -55.61 16 23 Si 1.07 51.03 26.29 68.60 1.80 52.83 16 24 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 25 H -0.25 -10.87 5.76 99.48 0.57 -10.29 16 26 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.05 0.86 6.56 -2.39 -0.02 0.84 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 1.04 7.84 -2.39 -0.02 1.02 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 33 H 0.07 1.25 6.57 -2.39 -0.02 1.23 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 1.02 7.68 -2.39 -0.02 1.00 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.08 7.88 -2.39 -0.02 1.06 16 40 H 0.10 2.11 8.08 -2.39 -0.02 2.09 16 41 H 0.10 2.10 7.88 -2.39 -0.02 2.08 16 42 H 0.41 13.87 8.53 -92.71 -0.79 13.08 16 43 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.06 2.58 4.88 -2.39 -0.01 2.57 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.26 15.60 8.73 -92.71 -0.81 14.79 16 Total: -1.00 -70.36 355.55 3.24 -67.12 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: -0.02 Total: 22.75 kcal Atomic # 6 Polarization: -21.40 SS G_CDS: 4.15 Total: -17.25 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -1.97 Total: -85.94 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -0.73 Total: -39.53 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 1.80 Total: 52.83 kcal Total: -70.36 3.24 -67.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248633634.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.135 kcal (2) G-P(sol) polarization free energy of solvation -70.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds