Wall clock time and date at job start Tue Mar 31 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47405 * 60.00219 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 13 13 N 1.46506 * 109.47075 * 59.99940 * 12 2 1 14 14 C 1.34777 * 120.00264 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99754 * 0.02562 * 14 13 12 16 16 C 1.50696 * 119.99757 * 180.02562 * 14 13 12 17 17 C 1.53002 * 109.46923 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47346 * 180.02562 * 17 16 14 19 19 H 1.09007 * 109.48239 * 305.00129 * 18 17 16 20 20 C 1.53091 * 109.48292 * 184.97500 * 18 17 16 21 21 C 1.53181 * 109.16228 * 182.42244 * 20 18 17 22 22 C 1.53179 * 109.05019 * 56.95922 * 21 20 18 23 23 C 1.53088 * 109.16171 * 303.02857 * 22 21 20 24 24 O 1.42901 * 109.41860 * 57.60902 * 23 22 21 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47486 * 180.02562 * 12 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 12 2 1 34 34 H 0.96999 * 119.99689 * 0.02562 * 13 12 2 35 35 H 1.09000 * 109.47165 * 300.00228 * 16 14 13 36 36 H 1.08996 * 109.47390 * 60.00098 * 16 14 13 37 37 H 1.09000 * 109.46986 * 299.99847 * 17 16 14 38 38 H 1.08996 * 109.47407 * 59.99619 * 17 16 14 39 39 H 1.08996 * 109.52096 * 302.31003 * 20 18 17 40 40 H 1.08993 * 109.52071 * 62.50470 * 20 18 17 41 41 H 1.09004 * 109.53368 * 297.09279 * 21 20 18 42 42 H 1.08996 * 109.61504 * 176.88263 * 21 20 18 43 43 H 1.09000 * 109.52135 * 183.11994 * 22 21 20 44 44 H 1.09004 * 109.56970 * 62.96396 * 22 21 20 45 45 H 1.08998 * 109.48309 * 297.62260 * 23 22 21 46 46 H 1.09004 * 109.48027 * 177.58791 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8074 -1.1191 4.0077 10 1 1.8270 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0082 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8777 -0.4908 -3.6696 15 8 2.5750 -1.4769 -3.7808 16 6 1.3758 0.2200 -4.8999 17 6 1.8857 -0.5013 -6.1492 18 6 1.3767 0.2206 -7.3984 19 1 0.2904 0.2997 -7.3553 20 6 1.7820 -0.5695 -8.6455 21 6 1.3218 0.1901 -9.8936 22 6 1.9274 1.5970 -9.8742 23 6 1.5162 2.3032 -8.5796 24 8 1.9478 1.5293 -7.4585 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 0.7082 1.1608 3.4844 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7489 -1.2493 34 1 0.9943 0.7582 -2.3564 35 1 0.2858 0.2200 -4.9003 36 1 1.7391 1.2476 -4.8995 37 1 2.9757 -0.5017 -6.1490 38 1 1.5221 -1.5288 -6.1494 39 1 2.8657 -0.6839 -8.6679 40 1 1.3113 -1.5523 -8.6229 41 1 0.2341 0.2614 -9.8965 42 1 1.6550 -0.3380 -10.7869 43 1 1.5607 2.1632 -10.7304 44 1 3.0142 1.5274 -9.9218 45 1 0.4318 2.4095 -8.5522 46 1 1.9794 3.2892 -8.5405 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315310821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:20 Heat of formation + Delta-G solvation = -135.418559 kcal Electronic energy + Delta-G solvation = -22667.150368 eV Core-core repulsion = 19361.725402 eV Total energy + Delta-G solvation = -3305.424967 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87896 -40.17298 -38.14497 -34.96994 -34.86838 -34.49743 -32.75448 -30.99713 -27.71391 -27.55992 -27.20755 -25.93251 -24.63068 -22.62704 -21.34069 -21.00868 -20.56791 -18.35815 -17.64323 -17.47710 -16.82208 -16.66759 -16.41262 -16.34067 -15.51218 -15.39193 -14.93657 -14.85610 -14.63949 -14.49997 -13.98626 -13.88356 -13.56054 -13.17390 -13.10679 -12.97068 -12.78356 -12.66558 -12.61198 -12.25108 -12.13607 -12.11713 -12.05877 -11.81089 -11.54916 -11.48062 -11.26836 -11.15500 -10.80117 -10.65967 -10.39596 -10.29137 -9.90129 -8.02288 -6.18233 1.43885 1.44796 1.51633 1.75770 2.36200 2.52291 2.89777 3.21012 3.71878 3.82434 3.97328 4.01587 4.09077 4.18697 4.35170 4.39128 4.43298 4.51717 4.54124 4.64480 4.71512 4.73466 4.80598 4.90358 4.96735 5.00950 5.04314 5.06580 5.12113 5.12746 5.17289 5.19954 5.22745 5.30740 5.39199 5.43999 5.62999 5.66871 5.67511 6.15497 6.22082 6.39061 6.43727 6.72683 6.85883 7.38400 7.49387 8.96455 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.045042 B = 0.002714 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.495336 B =10314.850425 C =10611.008505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.121 4.121 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.147 3.853 13 N -0.713 5.713 14 C 0.500 3.500 15 O -0.597 6.597 16 C -0.126 4.126 17 C -0.091 4.091 18 C 0.094 3.906 19 H 0.074 0.926 20 C -0.152 4.152 21 C -0.121 4.121 22 C -0.156 4.156 23 C 0.053 3.947 24 O -0.400 6.400 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.018 0.982 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.038 0.962 31 H 0.261 0.739 32 H 0.034 0.966 33 H 0.036 0.964 34 H 0.409 0.591 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.569 3.980 -23.552 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.179 4.179 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.023 3.977 13 N -0.365 5.365 14 C 0.289 3.711 15 O -0.478 6.478 16 C -0.166 4.166 17 C -0.129 4.129 18 C 0.036 3.964 19 H 0.092 0.908 20 C -0.190 4.190 21 C -0.159 4.159 22 C -0.193 4.193 23 C -0.023 4.023 24 O -0.320 6.320 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.246 0.754 35 H 0.135 0.865 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.038 3.480 -23.325 23.778 hybrid contribution 0.230 -0.385 1.118 1.205 sum -2.808 3.094 -22.207 22.597 Atomic orbital electron populations 1.21675 0.97020 0.98688 1.00502 1.18345 0.93330 0.92965 0.90274 1.21679 0.97844 0.97936 1.00472 1.21264 1.31803 1.12199 0.91697 0.93871 1.25457 0.95137 0.95607 1.00964 1.69897 1.36914 1.23274 1.23691 0.85820 0.78600 0.78834 0.79572 1.20326 1.20699 1.20238 1.21236 0.96776 0.95071 0.84609 1.46197 1.52857 1.31966 1.05449 1.21495 0.79578 0.84233 0.85821 1.90639 1.40572 1.28967 1.87667 1.21628 1.03652 1.01050 0.90232 1.21302 1.01218 0.98827 0.91580 1.22139 0.97334 0.82832 0.94062 0.90834 1.22203 1.01855 0.99902 0.95005 1.21602 1.01082 0.95592 0.97590 1.22192 1.01374 0.96994 0.98783 1.22740 0.99680 0.94775 0.85097 1.87935 1.70511 1.26527 1.47046 0.94255 0.91857 0.96312 0.91829 0.96481 0.94330 0.92981 0.94789 0.94516 0.75373 0.86531 0.87391 0.92671 0.90128 0.92223 0.90021 0.90897 0.90742 0.89271 0.92084 0.92152 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 3 C -0.12 -5.49 8.08 71.98 0.58 -4.90 16 4 C -0.53 -28.55 8.01 25.60 0.21 -28.34 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.50 5.15 84.66 0.44 1.93 16 7 N -0.90 -48.32 9.35 21.45 0.20 -48.12 16 8 Si 0.95 43.00 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.15 6.43 4.50 86.38 0.39 6.82 16 13 N -0.71 -24.99 4.96 -463.05 -2.30 -27.29 16 14 C 0.50 16.99 7.83 87.66 0.69 17.68 16 15 O -0.60 -25.34 15.98 -3.04 -0.05 -25.39 16 16 C -0.13 -2.95 5.60 29.85 0.17 -2.78 16 17 C -0.09 -2.10 4.21 30.59 0.13 -1.97 16 18 C 0.09 1.69 2.64 30.62 0.08 1.77 16 19 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 20 C -0.15 -2.38 5.42 30.69 0.17 -2.21 16 21 C -0.12 -1.45 6.03 30.71 0.19 -1.26 16 22 C -0.16 -1.86 6.14 30.68 0.19 -1.68 16 23 C 0.05 0.75 6.84 72.01 0.49 1.24 16 24 O -0.40 -8.16 9.94 -148.98 -1.48 -9.64 16 25 H 0.04 1.45 6.86 -2.39 -0.02 1.44 16 26 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 27 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 3.17 6.07 -2.39 -0.01 3.16 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 1.45 6.86 -2.39 -0.02 1.43 16 31 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.41 12.35 6.16 -92.71 -0.57 11.78 16 35 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.11 2.37 7.82 -2.39 -0.02 2.35 16 37 H 0.05 1.52 8.10 -2.39 -0.02 1.50 16 38 H 0.08 1.88 8.10 -2.39 -0.02 1.86 16 39 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -63.23 356.21 3.03 -60.20 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.37 Total: 21.34 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.26 Total: -16.15 kcal Atomic # 7 Polarization: -73.31 SS G_CDS: -2.10 Total: -75.40 kcal Atomic # 8 Polarization: -33.50 SS G_CDS: -1.53 Total: -35.03 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.23 3.03 -60.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315310821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.218 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds