Wall clock time and date at job start Tue Mar 31 2020 05:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 C 1.52994 * 109.46664 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.48322 * 304.97893 * 4 3 2 6 6 C 1.53092 * 109.47974 * 184.94551 * 4 3 2 7 7 C 1.53175 * 109.16593 * 182.41321 * 6 4 3 8 8 H 1.09000 * 109.61389 * 297.06665 * 7 6 4 9 9 C 1.50703 * 109.54484 * 176.84806 * 7 6 4 10 10 O 1.21289 * 119.99787 * 331.67128 * 9 7 6 11 11 N 1.34776 * 119.99789 * 151.67275 * 9 7 6 12 12 C 1.37094 * 120.00440 * 3.70620 * 11 9 7 13 13 H 1.08004 * 120.00005 * 6.29401 * 12 11 9 14 14 C 1.38951 * 119.99965 * 186.29986 * 12 11 9 15 15 N 1.31405 * 120.00123 * 20.60793 * 14 12 11 16 16 Si 1.86805 * 119.99709 * 200.60853 * 14 12 11 17 17 H 1.48501 * 109.47211 * 60.00157 * 16 14 12 18 18 H 1.48496 * 109.47105 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.47002 * 299.99971 * 16 14 12 20 20 C 1.46501 * 119.99794 * 183.70328 * 11 9 7 21 21 C 1.52997 * 109.47165 * 87.78495 * 20 11 9 22 22 C 1.53002 * 109.47347 * 182.40096 * 21 20 11 23 23 C 1.53178 * 109.04039 * 56.97481 * 7 6 4 24 24 C 1.53090 * 109.16344 * 303.02438 * 23 7 6 25 25 O 1.42901 * 109.41357 * 57.60755 * 24 23 7 26 26 H 1.09006 * 109.47075 * 59.99932 * 1 2 3 27 27 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47314 * 299.99997 * 1 2 3 29 29 H 1.09003 * 109.46888 * 240.00324 * 2 1 3 30 30 H 1.08997 * 109.46654 * 120.00529 * 2 1 3 31 31 H 1.08992 * 109.47184 * 300.00105 * 3 2 1 32 32 H 1.08996 * 109.46617 * 60.00309 * 3 2 1 33 33 H 1.09002 * 109.52026 * 302.31161 * 6 4 3 34 34 H 1.08999 * 109.52715 * 62.50148 * 6 4 3 35 35 H 0.97004 * 119.99693 * 180.02562 * 15 14 12 36 36 H 1.08994 * 109.47372 * 207.78769 * 20 11 9 37 37 H 1.09000 * 109.46988 * 327.79013 * 20 11 9 38 38 H 1.09007 * 109.47348 * 302.40549 * 21 20 11 39 39 H 1.09003 * 109.46832 * 62.39862 * 21 20 11 40 40 H 1.08999 * 109.46748 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47196 * 300.00069 * 22 21 20 42 42 H 1.08997 * 109.46742 * 60.00428 * 22 21 20 43 43 H 1.08994 * 109.52365 * 183.11251 * 23 7 6 44 44 H 1.09005 * 109.51554 * 62.92687 * 23 7 6 45 45 H 1.08994 * 109.47870 * 297.62065 * 24 23 7 46 46 H 1.09001 * 109.48672 * 177.59307 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9331 0.8534 0.8429 6 6 4.0805 2.8803 0.1251 7 6 5.6111 2.8775 0.0643 8 1 6.0099 2.3206 0.9122 9 6 6.1200 4.2953 0.1083 10 8 5.4355 5.1989 -0.3231 11 7 7.3357 4.5592 0.6269 12 6 8.1406 3.5310 1.0447 13 1 7.8457 2.5075 0.8660 14 6 9.3357 3.8058 1.6981 15 7 9.5166 4.9733 2.2735 16 14 10.6852 2.5155 1.7586 17 1 11.1032 2.1712 0.3758 18 1 11.8495 3.0518 2.5081 19 1 10.1757 1.2980 2.4393 20 6 7.7970 5.9447 0.7442 21 6 7.3300 6.5264 2.0800 22 6 7.7603 7.9915 2.1766 23 6 6.0582 2.2128 -1.2413 24 6 5.4712 0.8007 -1.3129 25 8 4.0471 0.8730 -1.2201 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.6847 3.4796 -0.6949 34 1 3.7545 3.3017 1.0760 35 1 10.3511 5.1652 2.7293 36 1 8.8856 5.9704 0.6974 37 1 7.3842 6.5355 -0.0735 38 1 6.2438 6.4616 2.1447 39 1 7.7770 5.9617 2.8982 40 1 7.4280 8.4057 3.1284 41 1 8.8465 8.0562 2.1119 42 1 7.3133 8.5561 1.3584 43 1 7.1464 2.1568 -1.2675 44 1 5.7021 2.7987 -2.0887 45 1 5.8595 0.2035 -0.4879 46 1 5.7509 0.3382 -2.2595 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330768249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:51 Heat of formation + Delta-G solvation = -102.888054 kcal Electronic energy + Delta-G solvation = -23815.404061 eV Core-core repulsion = 20511.389723 eV Total energy + Delta-G solvation = -3304.014338 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.65458 -38.12182 -35.27063 -34.89272 -33.12104 -32.10740 -31.38657 -30.92840 -27.14572 -26.03224 -24.98968 -23.59508 -22.49145 -21.09035 -20.62027 -19.77761 -18.94876 -16.90309 -16.29496 -16.14575 -15.40029 -14.67905 -14.51015 -14.35141 -14.23754 -13.94625 -13.72265 -13.37206 -13.14000 -12.69750 -12.56434 -12.47940 -12.12964 -11.98732 -11.59823 -11.37669 -11.35344 -11.15941 -10.95184 -10.84807 -10.77549 -10.73015 -10.54672 -10.47180 -10.30862 -10.23609 -10.03347 -9.83346 -9.53361 -9.27597 -8.81308 -8.21717 -7.77022 -6.36968 -3.88357 3.07145 3.17199 3.18112 3.86434 4.02455 4.04883 4.64481 4.91926 5.00940 5.06149 5.12036 5.33026 5.38265 5.42110 5.50557 5.58721 5.69292 5.76116 5.84462 5.87429 5.91104 5.98238 6.09843 6.13069 6.17575 6.21141 6.29771 6.33424 6.36693 6.39751 6.47180 6.50931 6.66354 6.74436 6.86060 6.94259 7.03640 7.09588 7.30987 7.50489 7.53532 7.73501 7.83676 8.43679 9.05419 9.55077 9.95691 10.57674 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.017951 B = 0.004850 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.451288 B = 5771.427507 C = 6719.794614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.092 3.908 5 H 0.054 0.946 6 C -0.127 4.127 7 C -0.092 4.092 8 H 0.087 0.913 9 C 0.457 3.543 10 O -0.611 6.611 11 N -0.440 5.440 12 C -0.333 4.333 13 H 0.100 0.900 14 C 0.035 3.965 15 N -0.856 5.856 16 Si 0.916 3.084 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.274 1.274 20 C 0.137 3.863 21 C -0.118 4.118 22 C -0.135 4.135 23 C -0.141 4.141 24 C 0.066 3.934 25 O -0.382 6.382 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.268 0.732 36 H 0.099 0.901 37 H 0.035 0.965 38 H 0.028 0.972 39 H 0.097 0.903 40 H 0.037 0.963 41 H 0.051 0.949 42 H 0.036 0.964 43 H 0.081 0.919 44 H 0.069 0.931 45 H 0.048 0.952 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -7.184 -1.706 10.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.034 3.966 5 H 0.072 0.928 6 C -0.165 4.165 7 C -0.113 4.113 8 H 0.105 0.895 9 C 0.245 3.755 10 O -0.498 6.498 11 N -0.156 5.156 12 C -0.460 4.460 13 H 0.117 0.883 14 C -0.169 4.169 15 N -0.494 5.494 16 Si 0.743 3.257 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.200 1.200 20 C 0.014 3.986 21 C -0.156 4.156 22 C -0.193 4.193 23 C -0.179 4.179 24 C -0.011 4.011 25 O -0.301 6.301 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.115 0.885 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.055 0.945 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.066 0.934 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.311 -6.687 -1.926 10.093 hybrid contribution 1.121 -0.459 0.460 1.296 sum -6.190 -7.146 -1.466 9.567 Atomic orbital electron populations 1.21785 0.96252 1.01237 1.01657 1.21486 0.95255 0.96906 1.02301 1.21623 0.93136 0.97259 1.02768 1.22145 0.94098 0.93505 0.86858 0.92769 1.22005 0.95040 0.96186 1.03294 1.21062 0.95265 0.96117 0.98883 0.89493 1.19884 0.81970 0.89859 0.83739 1.90507 1.57891 1.47505 1.53908 1.43845 1.13127 1.06581 1.52066 1.19654 1.00984 0.88372 1.37040 0.88277 1.25190 0.98961 0.97435 0.95350 1.70134 1.25591 1.22455 1.31255 0.86170 0.80516 0.80551 0.78501 1.19939 1.20879 1.19953 1.21353 1.01148 0.81105 0.94946 1.21803 0.97901 0.94724 1.01161 1.21586 1.00928 0.97513 0.99320 1.22067 1.01832 0.96191 0.97807 1.22545 0.80910 0.96168 1.01499 1.87848 1.21074 1.82365 1.38843 0.92809 0.93061 0.92945 0.91302 0.92388 0.91129 0.90765 0.90333 0.91405 0.92142 0.88339 0.94712 0.95344 0.88489 0.94357 0.92997 0.94487 0.90079 0.91212 0.93364 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.12 -1.35 5.83 -26.73 -0.16 -1.50 16 3 C -0.11 -1.39 4.92 -26.73 -0.13 -1.52 16 4 C 0.09 1.36 2.64 -26.69 -0.07 1.29 16 5 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 6 C -0.13 -2.27 4.34 -26.59 -0.12 -2.38 16 7 C -0.09 -1.82 1.76 -91.59 -0.16 -1.98 16 8 H 0.09 1.73 6.52 -51.93 -0.34 1.39 16 9 C 0.46 11.10 6.71 -10.98 -0.07 11.03 16 10 O -0.61 -16.44 15.68 5.55 0.09 -16.35 16 11 N -0.44 -11.00 2.63 -114.81 -0.30 -11.30 16 12 C -0.33 -8.11 9.03 -14.93 -0.13 -8.25 16 13 H 0.10 2.27 5.63 -52.48 -0.30 1.98 16 14 C 0.03 0.84 5.06 -17.47 -0.09 0.75 16 15 N -0.86 -20.91 8.09 55.50 0.45 -20.46 16 16 Si 0.92 18.71 29.60 -169.99 -5.03 13.68 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 C 0.14 3.38 4.62 -4.04 -0.02 3.36 16 21 C -0.12 -2.71 5.73 -26.73 -0.15 -2.87 16 22 C -0.14 -2.63 9.91 37.16 0.37 -2.26 16 23 C -0.14 -2.47 5.31 -26.59 -0.14 -2.61 16 24 C 0.07 0.96 6.84 37.20 0.25 1.22 16 25 O -0.38 -5.98 9.94 -35.23 -0.35 -6.33 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.53 7.76 -51.93 -0.40 1.13 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 36 H 0.10 2.50 5.81 -51.93 -0.30 2.20 16 37 H 0.03 0.87 7.44 -51.93 -0.39 0.49 16 38 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.10 2.41 6.17 -51.93 -0.32 2.09 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.44 7.65 -51.93 -0.40 1.05 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -27.40 355.11 -8.37 -35.78 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.33 Total: 6.43 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.25 Total: -6.78 kcal Atomic # 7 Polarization: -31.91 SS G_CDS: 0.15 Total: -31.76 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: -0.26 Total: -22.69 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.40 -8.37 -35.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.110 kcal (2) G-P(sol) polarization free energy of solvation -27.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds