Wall clock time and date at job start Tue Mar 31 2020 05:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46691 * 2 1 4 4 C 1.52996 * 109.47127 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.48351 * 304.98288 * 4 3 2 6 6 C 1.53277 * 109.45837 * 184.98032 * 4 3 2 7 7 C 1.53181 * 109.06257 * 182.44944 * 6 4 3 8 8 H 1.08999 * 109.54183 * 176.85493 * 7 6 4 9 9 C 1.50700 * 109.54346 * 297.03233 * 7 6 4 10 10 O 1.21288 * 120.00238 * 24.52445 * 9 7 6 11 11 N 1.34777 * 119.99788 * 204.52343 * 9 7 6 12 12 C 1.37106 * 119.99975 * 185.27977 * 11 9 7 13 13 H 1.07994 * 119.99598 * 346.32320 * 12 11 9 14 14 C 1.38950 * 119.99894 * 166.31751 * 12 11 9 15 15 N 1.31411 * 119.99776 * 145.84955 * 14 12 11 16 16 Si 1.86796 * 120.00250 * 325.85056 * 14 12 11 17 17 H 1.48501 * 109.47157 * 95.72454 * 16 14 12 18 18 H 1.48494 * 109.47155 * 215.72839 * 16 14 12 19 19 H 1.48502 * 109.47108 * 335.72985 * 16 14 12 20 20 C 1.46498 * 120.00279 * 5.27832 * 11 9 7 21 21 C 1.53004 * 109.46853 * 97.05846 * 20 11 9 22 22 C 1.53004 * 109.47024 * 185.14019 * 21 20 11 23 23 C 1.53173 * 109.10895 * 56.94580 * 7 6 4 24 24 C 1.53088 * 109.16391 * 302.97017 * 23 7 6 25 25 O 1.42910 * 109.41296 * 57.61262 * 24 23 7 26 26 H 1.08999 * 109.46638 * 179.97438 * 1 2 3 27 27 H 1.08990 * 109.47406 * 300.00221 * 1 2 3 28 28 H 1.09003 * 109.46785 * 60.00609 * 1 2 3 29 29 H 1.08997 * 109.47552 * 240.00110 * 2 1 3 30 30 H 1.08997 * 109.47184 * 119.99524 * 2 1 3 31 31 H 1.08997 * 109.47032 * 59.99792 * 3 2 1 32 32 H 1.08997 * 109.46917 * 299.99687 * 3 2 1 33 33 H 1.08996 * 109.63903 * 62.53857 * 6 4 3 34 34 H 1.08994 * 109.50425 * 302.28291 * 6 4 3 35 35 H 0.96998 * 120.00474 * 180.02562 * 15 14 12 36 36 H 1.09000 * 109.47183 * 337.06234 * 20 11 9 37 37 H 1.08996 * 109.47452 * 217.05671 * 20 11 9 38 38 H 1.08999 * 109.47071 * 65.14044 * 21 20 11 39 39 H 1.08998 * 109.47077 * 305.13867 * 21 20 11 40 40 H 1.09000 * 109.47362 * 295.25208 * 22 21 20 41 41 H 1.08998 * 109.47185 * 55.25363 * 22 21 20 42 42 H 1.09003 * 109.47218 * 175.25520 * 22 21 20 43 43 H 1.09001 * 109.52408 * 62.88019 * 23 7 6 44 44 H 1.09003 * 109.52217 * 183.06508 * 23 7 6 45 45 H 1.09001 * 109.48443 * 177.58799 * 24 23 7 46 46 H 1.09004 * 109.48561 * 297.61955 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4427 0.0006 5 1 3.9332 0.8537 0.8428 6 6 4.0804 2.8826 0.1261 7 6 5.6109 2.8779 0.0642 8 1 5.9802 3.9029 0.0966 9 6 6.1605 2.1068 1.2365 10 8 5.4816 1.2595 1.7771 11 7 7.4066 2.3586 1.6843 12 6 7.9470 1.5851 2.6790 13 1 7.3140 0.9263 3.2547 14 6 9.3091 1.6488 2.9461 15 7 9.7442 1.5092 4.1782 16 14 10.5216 1.9330 1.5539 17 1 10.8467 3.3794 1.4681 18 1 11.7633 1.1611 1.8137 19 1 9.9188 1.4843 0.2731 20 6 8.1836 3.4588 1.1081 21 6 8.0551 4.6955 1.9997 22 6 8.7596 5.8795 1.3342 23 6 6.0580 2.2133 -1.2414 24 6 5.4713 0.8011 -1.3129 25 8 4.0470 0.8732 -1.2202 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 3.7556 3.3048 1.0770 34 1 3.6845 3.4817 -0.6938 35 1 10.6950 1.5541 4.3648 36 1 7.8052 3.6882 0.1120 37 1 9.2316 3.1670 1.0404 38 1 8.5159 4.4955 2.9670 39 1 7.0009 4.9331 2.1417 40 1 9.8285 5.6762 1.2687 41 1 8.3557 6.0263 0.3326 42 1 8.5966 6.7794 1.9273 43 1 5.7020 2.7990 -2.0889 44 1 7.1463 2.1573 -1.2676 45 1 5.7508 0.3388 -2.2596 46 1 5.8596 0.2038 -0.4879 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330768251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:59 Heat of formation + Delta-G solvation = -83.607195 kcal Electronic energy + Delta-G solvation = -24397.608410 eV Core-core repulsion = 21094.430153 eV Total energy + Delta-G solvation = -3303.178257 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.10161 -37.94479 -35.58564 -34.76347 -33.28987 -32.63346 -31.68137 -30.85851 -27.13110 -26.11714 -25.62491 -23.71910 -22.46390 -21.39985 -20.94061 -20.62184 -18.14938 -17.12037 -16.61751 -16.05301 -15.59891 -15.53214 -14.64570 -14.44970 -14.18603 -14.14921 -13.76071 -13.40042 -13.19142 -12.78773 -12.70578 -12.61584 -12.32493 -12.11638 -12.00575 -11.85335 -11.64386 -11.38974 -11.25121 -11.08018 -10.98199 -10.78578 -10.63000 -10.59953 -10.40988 -10.28325 -10.21495 -9.87791 -9.55854 -9.11807 -8.98659 -8.06867 -7.94917 -6.52876 -3.81346 2.96448 3.15750 3.19571 3.63768 4.05844 4.21955 4.32139 4.86598 4.98590 5.12128 5.14200 5.22659 5.27834 5.30330 5.37590 5.47105 5.48499 5.63484 5.69017 5.70917 5.75630 5.77728 5.90928 5.94885 5.95667 5.99926 6.01796 6.07773 6.14716 6.16701 6.26392 6.28747 6.31398 6.35207 6.38655 6.47778 6.53750 6.56966 6.78874 6.84764 7.42752 7.73682 8.19293 8.43307 8.94594 9.33785 9.77282 10.58541 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022350 B = 0.005145 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.498267 B = 5440.844431 C = 5738.411150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.107 4.107 4 C 0.067 3.933 5 H 0.113 0.887 6 C -0.122 4.122 7 C -0.109 4.109 8 H 0.082 0.918 9 C 0.455 3.545 10 O -0.569 6.569 11 N -0.452 5.452 12 C -0.326 4.326 13 H 0.116 0.884 14 C 0.063 3.937 15 N -0.840 5.840 16 Si 0.866 3.134 17 H -0.273 1.273 18 H -0.291 1.291 19 H -0.270 1.270 20 C 0.093 3.907 21 C -0.136 4.136 22 C -0.150 4.150 23 C -0.141 4.141 24 C 0.063 3.937 25 O -0.385 6.385 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.274 0.726 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 5.162 -10.150 13.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.145 4.145 4 C 0.011 3.989 5 H 0.130 0.870 6 C -0.160 4.160 7 C -0.131 4.131 8 H 0.100 0.900 9 C 0.245 3.755 10 O -0.453 6.453 11 N -0.171 5.171 12 C -0.452 4.452 13 H 0.134 0.866 14 C -0.144 4.144 15 N -0.475 5.475 16 Si 0.696 3.304 17 H -0.201 1.201 18 H -0.219 1.219 19 H -0.196 1.196 20 C -0.031 4.031 21 C -0.175 4.175 22 C -0.208 4.208 23 C -0.180 4.180 24 C -0.014 4.014 25 O -0.304 6.304 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.071 4.645 -9.839 13.547 hybrid contribution 1.309 0.468 -0.533 1.489 sum -6.762 5.113 -10.372 13.396 Atomic orbital electron populations 1.21784 0.96529 1.01157 1.01329 1.21465 0.94830 0.97067 1.02587 1.21602 0.94033 0.97184 1.01664 1.22808 0.93131 0.93890 0.89117 0.86981 1.21947 0.93773 0.98419 1.01833 1.21300 0.96797 1.00127 0.94870 0.89981 1.19807 0.83160 0.86324 0.86229 1.90378 1.57784 1.37106 1.60060 1.43843 1.12945 1.26381 1.33923 1.19139 0.92828 1.23343 1.09898 0.86617 1.25045 0.97106 0.96567 0.95687 1.69957 1.15828 1.43860 1.17888 0.87169 0.81180 0.77476 0.84616 1.20132 1.21918 1.19557 1.21842 0.96496 0.88166 0.96552 1.21839 1.01010 0.93859 1.00786 1.21757 1.00692 0.98051 1.00283 1.22093 1.01152 0.98132 0.96579 1.22457 0.81562 0.95527 1.01810 1.87769 1.20442 1.82684 1.39508 0.93111 0.93025 0.93106 0.91479 0.91977 0.91153 0.92200 0.91115 0.91897 0.91567 0.91118 0.92519 0.90363 0.91912 0.92893 0.93039 0.92676 0.90944 0.91008 0.89711 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.91 37.16 0.37 -1.27 16 2 C -0.12 -1.63 5.83 -26.72 -0.16 -1.79 16 3 C -0.11 -1.51 4.92 -26.73 -0.13 -1.64 16 4 C 0.07 1.15 2.34 -26.59 -0.06 1.09 16 5 H 0.11 2.32 5.15 -51.93 -0.27 2.05 16 6 C -0.12 -1.96 4.77 -26.49 -0.13 -2.09 16 7 C -0.11 -1.90 2.17 -91.59 -0.20 -2.09 16 8 H 0.08 1.29 6.56 -51.93 -0.34 0.95 16 9 C 0.46 10.19 5.83 -10.99 -0.06 10.13 16 10 O -0.57 -14.43 12.48 5.55 0.07 -14.36 16 11 N -0.45 -10.68 2.53 -114.81 -0.29 -10.97 16 12 C -0.33 -9.00 9.68 -14.93 -0.14 -9.15 16 13 H 0.12 3.62 7.45 -52.49 -0.39 3.23 16 14 C 0.06 1.68 5.25 -17.47 -0.09 1.59 16 15 N -0.84 -23.53 13.96 55.50 0.77 -22.76 16 16 Si 0.87 19.91 24.82 -169.99 -4.22 15.69 16 17 H -0.27 -5.84 6.82 56.52 0.39 -5.46 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.09 1.85 4.21 -4.04 -0.02 1.84 16 21 C -0.14 -2.46 6.21 -26.73 -0.17 -2.62 16 22 C -0.15 -2.13 9.91 37.16 0.37 -1.77 16 23 C -0.14 -2.22 5.41 -26.60 -0.14 -2.37 16 24 C 0.06 1.06 6.58 37.20 0.24 1.31 16 25 O -0.38 -6.66 9.94 -35.23 -0.35 -7.01 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.07 1.20 5.20 -51.93 -0.27 0.93 16 37 H 0.06 1.21 1.52 -51.93 -0.08 1.13 16 38 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.07 1.13 7.51 -51.93 -0.39 0.74 16 45 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 46 H 0.06 1.18 7.02 -51.93 -0.36 0.82 16 LS Contribution 346.48 15.07 5.22 5.22 Total: -1.00 -29.52 346.48 -7.12 -36.64 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -8.00 Total: 6.39 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.32 Total: -8.83 kcal Atomic # 7 Polarization: -34.22 SS G_CDS: 0.48 Total: -33.73 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.28 Total: -21.37 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -4.22 Total: 15.69 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.52 -7.12 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.966 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds