Wall clock time and date at job start Tue Mar 31 2020 05:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47248 * 2 1 4 4 C 1.52992 * 109.46969 * 180.02562 * 3 2 1 5 5 H 1.08994 * 109.49317 * 55.03080 * 4 3 2 6 6 C 1.53099 * 109.48111 * 175.06135 * 4 3 2 7 7 C 1.53179 * 109.16280 * 177.58900 * 6 4 3 8 8 H 1.08998 * 109.54016 * 62.88616 * 7 6 4 9 9 C 1.50703 * 109.61255 * 183.10409 * 7 6 4 10 10 O 1.21289 * 120.00295 * 10.29320 * 9 7 6 11 11 N 1.34778 * 119.99731 * 190.28900 * 9 7 6 12 12 C 1.37096 * 120.00216 * 3.73465 * 11 9 7 13 13 H 1.08002 * 120.00197 * 343.65383 * 12 11 9 14 14 C 1.38950 * 119.99927 * 163.64641 * 12 11 9 15 15 N 1.31410 * 120.00073 * 351.81073 * 14 12 11 16 16 Si 1.86796 * 119.99767 * 171.80963 * 14 12 11 17 17 H 1.48507 * 109.47150 * 90.00336 * 16 14 12 18 18 H 1.48504 * 109.47194 * 209.99915 * 16 14 12 19 19 H 1.48499 * 109.47316 * 330.00176 * 16 14 12 20 20 C 1.46503 * 119.99790 * 183.73987 * 11 9 7 21 21 C 1.52992 * 109.47009 * 277.66842 * 20 11 9 22 22 C 1.53004 * 109.46962 * 179.97438 * 21 20 11 23 23 C 1.53169 * 109.03889 * 303.01807 * 7 6 4 24 24 C 1.53096 * 109.16524 * 56.97852 * 23 7 6 25 25 O 1.42897 * 109.41743 * 302.39670 * 24 23 7 26 26 H 1.09003 * 109.47386 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46598 * 299.99970 * 1 2 3 28 28 H 1.08995 * 109.47035 * 59.99343 * 1 2 3 29 29 H 1.09006 * 109.46598 * 240.00030 * 2 1 3 30 30 H 1.08995 * 109.47035 * 120.00657 * 2 1 3 31 31 H 1.09000 * 109.46650 * 60.00287 * 3 2 1 32 32 H 1.09002 * 109.46858 * 300.00549 * 3 2 1 33 33 H 1.08997 * 109.52090 * 57.68252 * 6 4 3 34 34 H 1.09002 * 109.51878 * 297.49471 * 6 4 3 35 35 H 0.97001 * 120.00397 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.47119 * 37.67457 * 20 11 9 37 37 H 1.08998 * 109.46844 * 157.66795 * 20 11 9 38 38 H 1.08998 * 109.47682 * 300.00270 * 21 20 11 39 39 H 1.09003 * 109.46753 * 60.00640 * 21 20 11 40 40 H 1.09000 * 109.47083 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.47387 * 300.00178 * 22 21 20 42 42 H 1.09004 * 109.47005 * 60.00385 * 22 21 20 43 43 H 1.08998 * 109.52695 * 176.88861 * 23 7 6 44 44 H 1.08998 * 109.52437 * 297.07967 * 23 7 6 45 45 H 1.09003 * 109.47421 * 62.37663 * 24 23 7 46 46 H 1.08994 * 109.48197 * 182.39658 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9333 0.8536 -0.8429 6 6 4.0806 2.8804 -0.1249 7 6 5.6112 2.8775 -0.0642 8 1 6.0086 2.3197 -0.9121 9 6 6.1219 4.2946 -0.1091 10 8 5.3486 5.2219 0.0058 11 7 7.4380 4.5316 -0.2767 12 6 8.3018 3.4871 -0.4831 13 1 7.9933 2.4778 -0.2536 14 6 9.5740 3.7270 -0.9876 15 7 9.8950 4.9266 -1.4174 16 14 10.8281 2.3443 -1.0547 17 1 10.7160 1.6370 -2.3557 18 1 12.1947 2.9082 -0.9141 19 1 10.5708 1.3884 0.0522 20 6 7.9457 5.9053 -0.2384 21 6 7.7437 6.5620 -1.6054 22 6 8.2733 7.9969 -1.5651 23 6 6.0582 2.2127 1.2413 24 6 5.4712 0.8006 1.3129 25 8 4.0471 0.8728 1.2201 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.6847 3.4796 0.6950 34 1 3.7545 3.3017 -1.0758 35 1 10.7833 5.0943 -1.7693 36 1 7.4051 6.4714 0.5202 37 1 9.0079 5.8934 0.0056 38 1 8.2843 5.9959 -2.3639 39 1 6.6813 6.5739 -1.8492 40 1 8.1289 8.4649 -2.5389 41 1 7.7322 8.5627 -0.8067 42 1 9.3355 7.9854 -1.3210 43 1 7.1464 2.1566 1.2676 44 1 5.7022 2.7984 2.0888 45 1 5.8595 0.2034 0.4878 46 1 5.7510 0.3382 2.2594 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330768252.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:03 Heat of formation + Delta-G solvation = -103.114187 kcal Electronic energy + Delta-G solvation = -23847.052190 eV Core-core repulsion = 20543.028046 eV Total energy + Delta-G solvation = -3304.024144 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.66944 -38.11223 -35.22166 -34.90917 -33.17905 -32.07738 -31.38493 -30.85182 -27.10750 -26.03884 -24.98603 -23.53751 -22.47552 -21.07990 -20.61048 -19.78368 -18.93157 -17.00939 -16.30852 -16.05637 -15.35152 -14.69243 -14.54097 -14.35240 -14.26440 -13.93025 -13.68217 -13.33185 -13.11371 -12.66507 -12.51987 -12.49032 -12.12995 -11.95521 -11.55270 -11.39651 -11.32659 -11.21263 -10.91643 -10.83729 -10.76469 -10.67425 -10.54120 -10.40312 -10.30274 -10.20693 -10.01378 -9.85554 -9.58416 -9.24034 -8.80411 -8.23403 -7.68982 -6.29843 -3.94124 3.06649 3.16775 3.18024 3.88955 4.03265 4.06041 4.63870 4.95740 5.03970 5.06113 5.11892 5.35174 5.37337 5.43047 5.49126 5.59418 5.69027 5.76163 5.85636 5.87427 5.91866 5.99863 6.10169 6.15169 6.19645 6.21202 6.29843 6.33711 6.37772 6.41230 6.51754 6.53554 6.68544 6.76813 6.86932 6.95117 7.07439 7.14614 7.32578 7.54170 7.56325 7.78074 7.85658 8.46264 9.06066 9.56056 9.96085 10.62925 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.004858 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.836057 B = 5762.616575 C = 6833.841923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.110 4.110 4 C 0.091 3.909 5 H 0.054 0.946 6 C -0.124 4.124 7 C -0.090 4.090 8 H 0.085 0.915 9 C 0.460 3.540 10 O -0.608 6.608 11 N -0.442 5.442 12 C -0.329 4.329 13 H 0.100 0.900 14 C 0.032 3.968 15 N -0.864 5.864 16 Si 0.921 3.079 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.271 1.271 20 C 0.139 3.861 21 C -0.115 4.115 22 C -0.135 4.135 23 C -0.147 4.147 24 C 0.065 3.935 25 O -0.383 6.383 26 H 0.050 0.950 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.266 0.734 36 H 0.026 0.974 37 H 0.107 0.893 38 H 0.088 0.912 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.052 0.948 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.048 0.952 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.293 -7.292 1.486 10.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.148 4.148 4 C 0.033 3.967 5 H 0.072 0.928 6 C -0.163 4.163 7 C -0.111 4.111 8 H 0.103 0.897 9 C 0.248 3.752 10 O -0.495 6.495 11 N -0.159 5.159 12 C -0.457 4.457 13 H 0.118 0.882 14 C -0.172 4.172 15 N -0.504 5.504 16 Si 0.747 3.253 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.195 1.195 20 C 0.017 3.983 21 C -0.153 4.153 22 C -0.193 4.193 23 C -0.185 4.185 24 C -0.012 4.012 25 O -0.302 6.302 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.066 0.934 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.569 -6.793 1.607 10.297 hybrid contribution 1.100 -0.495 -0.408 1.274 sum -6.469 -7.288 1.199 9.818 Atomic orbital electron populations 1.21784 0.96258 1.01232 1.01655 1.21486 0.95249 0.96922 1.02293 1.21621 0.93157 0.97230 1.02760 1.22158 0.94095 0.93573 0.86862 0.92826 1.21973 0.95009 0.95896 1.03386 1.21013 0.95169 0.96098 0.98821 0.89697 1.19992 0.82466 0.89940 0.82777 1.90512 1.55915 1.45690 1.57347 1.43785 1.04772 1.06818 1.60485 1.19791 0.94870 0.88834 1.42206 0.88204 1.25279 0.98611 0.97424 0.95873 1.70077 1.20968 1.20055 1.39272 0.86025 0.79919 0.80616 0.78694 1.20429 1.20769 1.19539 1.21376 1.00703 0.81020 0.95239 1.21709 0.98509 0.94654 1.00447 1.21580 1.00841 0.97510 0.99358 1.22203 1.02700 0.96053 0.97554 1.22558 0.80830 0.96284 1.01491 1.87846 1.21154 1.82376 1.38830 0.93065 0.92804 0.92954 0.92405 0.91303 0.91151 0.90765 0.90614 0.91217 0.92278 0.95519 0.87544 0.89352 0.94942 0.94470 0.94519 0.92922 0.89058 0.91483 0.93398 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.12 -1.34 5.83 -26.73 -0.16 -1.50 16 3 C -0.11 -1.38 4.92 -26.74 -0.13 -1.52 16 4 C 0.09 1.35 2.64 -26.68 -0.07 1.28 16 5 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 6 C -0.12 -2.21 4.12 -26.59 -0.11 -2.32 16 7 C -0.09 -1.77 1.75 -91.59 -0.16 -1.93 16 8 H 0.08 1.67 7.43 -51.93 -0.39 1.29 16 9 C 0.46 11.15 6.84 -10.98 -0.08 11.07 16 10 O -0.61 -16.28 15.40 5.55 0.09 -16.20 16 11 N -0.44 -11.00 2.65 -114.81 -0.30 -11.30 16 12 C -0.33 -7.96 8.52 -14.93 -0.13 -8.08 16 13 H 0.10 2.25 4.85 -52.49 -0.25 2.00 16 14 C 0.03 0.76 5.21 -17.47 -0.09 0.66 16 15 N -0.86 -21.22 8.06 55.50 0.45 -20.77 16 16 Si 0.92 18.69 29.56 -169.99 -5.02 13.67 16 17 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 19 H -0.27 -5.37 7.11 56.52 0.40 -4.96 16 20 C 0.14 3.43 4.47 -4.04 -0.02 3.41 16 21 C -0.11 -2.68 5.64 -26.73 -0.15 -2.83 16 22 C -0.13 -2.64 9.91 37.16 0.37 -2.27 16 23 C -0.15 -2.59 5.09 -26.59 -0.14 -2.73 16 24 C 0.07 0.96 6.84 37.21 0.25 1.22 16 25 O -0.38 -5.99 9.94 -35.23 -0.35 -6.34 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.46 7.90 -51.93 -0.41 1.05 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.27 6.26 8.31 -40.82 -0.34 5.93 16 36 H 0.03 0.67 7.72 -51.93 -0.40 0.27 16 37 H 0.11 2.71 5.74 -51.93 -0.30 2.41 16 38 H 0.09 2.22 6.39 -51.93 -0.33 1.89 16 39 H 0.03 0.80 7.87 -51.93 -0.41 0.39 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.67 5.94 -51.93 -0.31 1.36 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 352.60 15.07 5.31 5.31 Total: -1.00 -27.31 352.60 -8.33 -35.64 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -8.26 Total: 6.59 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.23 Total: -6.59 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.14 Total: -32.08 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.26 Total: -22.54 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.31 -8.33 -35.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330768252.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.478 kcal (2) G-P(sol) polarization free energy of solvation -27.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds