Wall clock time and date at job start Tue Mar 31 2020 06:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.46904 * 2 1 4 4 H 1.08998 * 109.48313 * 305.02291 * 3 2 1 5 5 C 1.53089 * 109.48028 * 184.99792 * 3 2 1 6 6 C 1.53173 * 109.16767 * 297.61762 * 5 3 2 7 7 H 1.09001 * 109.54277 * 62.96794 * 6 5 3 8 8 C 1.52998 * 109.54765 * 183.15144 * 6 5 3 9 9 C 1.50700 * 109.47045 * 184.99883 * 8 6 5 10 10 O 1.21278 * 120.00197 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99660 * 180.02562 * 9 8 6 12 12 C 1.46501 * 120.00108 * 359.97438 * 11 9 8 13 13 C 1.46504 * 119.99772 * 179.97438 * 11 9 8 14 14 H 1.09003 * 109.46918 * 0.02562 * 13 11 9 15 15 C 1.52996 * 109.47158 * 239.99608 * 13 11 9 16 16 C 1.50705 * 109.46856 * 119.99839 * 13 11 9 17 17 H 1.08000 * 120.00220 * 5.48067 * 16 13 11 18 18 C 1.37881 * 119.99984 * 185.48819 * 16 13 11 19 19 N 1.31506 * 120.00020 * 9.56648 * 18 16 13 20 20 Si 1.86794 * 119.99803 * 189.57501 * 18 16 13 21 21 H 1.48503 * 109.47465 * 84.99204 * 20 18 16 22 22 H 1.48501 * 109.47094 * 204.99017 * 20 18 16 23 23 H 1.48505 * 109.47435 * 324.98935 * 20 18 16 24 24 C 1.53182 * 109.03224 * 303.01910 * 6 5 3 25 25 C 1.53091 * 109.16435 * 56.97710 * 24 6 5 26 26 O 1.42894 * 109.41794 * 302.39325 * 25 24 6 27 27 H 1.08993 * 109.46891 * 299.99689 * 1 2 3 28 28 H 1.09003 * 109.46894 * 60.00320 * 1 2 3 29 29 H 1.08996 * 109.46651 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47023 * 239.99924 * 2 1 3 31 31 H 1.08994 * 109.46851 * 119.99965 * 2 1 3 32 32 H 1.09000 * 109.52325 * 177.70964 * 5 3 2 33 33 H 1.09001 * 109.52207 * 57.52162 * 5 3 2 34 34 H 1.09001 * 109.46858 * 65.00242 * 8 6 5 35 35 H 1.08993 * 109.47000 * 304.99633 * 8 6 5 36 36 H 1.09000 * 109.46911 * 269.99980 * 12 11 9 37 37 H 1.08998 * 109.47143 * 30.00077 * 12 11 9 38 38 H 1.09001 * 109.46925 * 150.00413 * 12 11 9 39 39 H 1.09003 * 109.47053 * 62.63750 * 15 13 11 40 40 H 1.08999 * 109.46658 * 182.62997 * 15 13 11 41 41 H 1.08996 * 109.47437 * 302.63525 * 15 13 11 42 42 H 0.96996 * 120.00362 * 180.02562 * 19 18 16 43 43 H 1.09004 * 109.51977 * 176.88114 * 24 6 5 44 44 H 1.08998 * 109.52438 * 297.07029 * 24 6 5 45 45 H 1.08999 * 109.47873 * 182.40170 * 25 24 6 46 46 H 1.09005 * 109.49135 * 62.38316 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5657 1.4446 -0.1257 6 6 4.1716 0.7377 1.0906 7 1 3.8518 -0.3043 1.1035 8 6 5.6982 0.8036 1.0132 9 6 6.2935 0.0037 2.1431 10 8 5.5681 -0.5630 2.9329 11 7 7.6319 -0.0812 2.2766 12 6 8.5081 0.6038 1.3229 13 6 8.2106 -0.8584 3.3754 14 1 7.4101 -1.2915 3.9751 15 6 9.0671 0.0575 4.2521 16 6 9.0692 -1.9616 2.8125 17 1 9.2451 -2.0196 1.7485 18 6 9.6301 -2.8971 3.6560 19 7 9.2693 -2.9432 4.9197 20 14 10.9027 -4.0989 3.0035 21 1 12.2460 -3.4671 3.0425 22 1 10.9062 -5.3218 3.8459 23 1 10.5675 -4.4632 1.6034 24 6 3.6924 1.4384 2.3656 25 6 2.1618 1.4366 2.3952 26 8 1.6632 2.0814 1.2215 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9264 2.4724 -0.1667 33 1 3.8570 0.9188 -1.0351 34 1 6.0215 1.8415 1.0931 35 1 6.0318 0.3913 0.0610 36 1 8.7317 -0.0638 0.4908 37 1 8.0090 1.4973 0.9480 38 1 9.4355 0.8874 1.8205 39 1 8.4371 0.8280 4.6966 40 1 9.5350 -0.5297 5.0423 41 1 9.8390 0.5265 3.6421 42 1 9.6641 -3.6011 5.5132 43 1 4.0742 0.9081 3.2381 44 1 4.0556 2.4661 2.3750 45 1 1.8146 1.9715 3.2792 46 1 1.7998 0.4089 2.4269 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:59 Heat of formation + Delta-G solvation = -104.516058 kcal Electronic energy + Delta-G solvation = -23639.529261 eV Core-core repulsion = 20335.444328 eV Total energy + Delta-G solvation = -3304.084934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.15992 -38.83447 -35.52703 -34.29081 -33.44854 -32.80349 -30.21861 -29.94641 -28.12758 -26.09969 -25.17859 -24.17955 -23.40254 -22.25548 -20.72663 -19.06383 -18.19900 -16.75226 -16.48700 -15.93206 -15.85368 -15.45381 -15.16356 -14.65835 -14.50400 -13.98508 -13.64047 -13.58691 -12.97008 -12.68942 -12.62890 -12.49121 -12.38746 -12.02542 -11.73580 -11.71071 -11.58475 -11.40072 -11.20208 -11.00777 -10.97213 -10.86311 -10.71463 -10.67709 -10.40833 -10.26600 -10.18096 -9.95283 -9.37274 -9.20977 -8.75990 -8.39894 -7.56906 -6.08785 -4.13517 3.26245 3.32917 3.34504 3.44555 3.88556 3.98045 4.39993 4.65233 4.79801 4.85411 4.93266 5.02264 5.11070 5.22746 5.33288 5.41101 5.42790 5.50698 5.54000 5.59934 5.69608 5.75380 5.76049 5.87199 5.88518 5.95290 6.01474 6.07028 6.10841 6.19869 6.23604 6.27711 6.49729 6.54448 6.68785 6.74355 6.98610 7.28693 7.37450 7.55024 7.70786 7.93193 8.18341 8.56102 8.86407 9.10509 9.51787 10.98549 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027203 B = 0.003692 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.060814 B = 7581.823861 C = 7747.883730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.161 4.161 3 C 0.093 3.907 4 H 0.097 0.903 5 C -0.145 4.145 6 C -0.071 4.071 7 H 0.081 0.919 8 C -0.135 4.135 9 C 0.503 3.497 10 O -0.551 6.551 11 N -0.595 5.595 12 C 0.086 3.914 13 C 0.255 3.745 14 H 0.070 0.930 15 C -0.141 4.141 16 C -0.529 4.529 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.154 4.154 25 C 0.058 3.942 26 O -0.380 6.380 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.015 0.985 40 H 0.075 0.925 41 H 0.032 0.968 42 H 0.263 0.737 43 H 0.096 0.904 44 H 0.061 0.939 45 H 0.089 0.911 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.837 9.891 -10.104 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.199 4.199 3 C 0.035 3.965 4 H 0.115 0.885 5 C -0.183 4.183 6 C -0.090 4.090 7 H 0.099 0.901 8 C -0.175 4.175 9 C 0.290 3.710 10 O -0.430 6.430 11 N -0.327 5.327 12 C -0.058 4.058 13 C 0.155 3.845 14 H 0.088 0.912 15 C -0.200 4.200 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.136 4.136 19 N -0.522 5.522 20 Si 0.722 3.278 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.191 4.191 25 C -0.018 4.018 26 O -0.299 6.299 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.073 0.927 43 H 0.115 0.885 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.265 9.646 -9.490 17.607 hybrid contribution 1.231 -0.945 -0.435 1.612 sum -10.034 8.700 -9.924 16.579 Atomic orbital electron populations 1.21695 0.95407 1.01307 1.02034 1.22221 0.96749 0.97605 1.03325 1.22160 0.93698 0.93086 0.87557 0.88525 1.22276 0.95833 1.01531 0.98681 1.20930 0.93299 1.00534 0.94262 0.90092 1.21751 0.96065 1.00951 0.98721 1.20408 0.82671 0.81684 0.86222 1.90601 1.59575 1.47690 1.45132 1.48238 1.04817 1.49795 1.29802 1.21551 0.95556 0.95484 0.93200 1.18924 0.93882 0.88048 0.83640 0.91230 1.22025 0.99079 0.98280 1.00604 1.21280 1.30634 1.11006 0.93817 0.92354 1.24901 0.96809 0.96946 0.94976 1.69966 1.41704 1.35832 1.04698 0.86580 0.81931 0.80432 0.78875 1.20498 1.21200 1.20015 1.22338 0.95829 1.00964 0.99982 1.22595 0.93762 0.97837 0.87612 1.87930 1.74812 1.53331 1.13781 0.92258 0.92980 0.92972 0.91109 0.90674 0.91166 0.91056 0.89709 0.89605 0.93402 0.92936 0.91027 0.96547 0.90596 0.94920 0.92692 0.88539 0.92028 0.89300 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.01 16 2 C -0.16 -1.67 4.74 -26.73 -0.13 -1.79 16 3 C 0.09 0.99 3.29 -26.69 -0.09 0.90 16 4 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 5 C -0.15 -1.56 4.92 -26.60 -0.13 -1.69 16 6 C -0.07 -0.97 1.61 -90.44 -0.15 -1.11 16 7 H 0.08 1.23 6.55 -51.93 -0.34 0.89 16 8 C -0.13 -1.93 3.73 -27.88 -0.10 -2.04 16 9 C 0.50 10.08 7.41 -10.99 -0.08 10.00 16 10 O -0.55 -13.02 13.33 5.56 0.07 -12.95 16 11 N -0.60 -12.51 2.75 -175.26 -0.48 -13.00 16 12 C 0.09 1.41 9.43 59.85 0.56 1.98 16 13 C 0.26 6.49 2.50 -69.08 -0.17 6.32 16 14 H 0.07 2.07 6.84 -51.93 -0.36 1.72 16 15 C -0.14 -3.31 9.09 37.16 0.34 -2.97 16 16 C -0.53 -14.33 8.33 -34.44 -0.29 -14.61 16 17 H 0.06 1.56 7.53 -52.49 -0.40 1.16 16 18 C 0.07 1.83 5.18 -17.82 -0.09 1.74 16 19 N -0.88 -25.39 12.16 55.43 0.67 -24.72 16 20 Si 0.89 21.03 29.55 -169.99 -5.02 16.01 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 C -0.15 -2.16 5.13 -26.59 -0.14 -2.29 16 25 C 0.06 0.73 6.51 37.20 0.24 0.98 16 26 O -0.38 -4.80 10.13 -35.23 -0.36 -5.16 16 27 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.89 4.98 -51.93 -0.26 0.63 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.07 7.40 -51.93 -0.38 0.68 16 35 H 0.09 1.11 8.11 -51.93 -0.42 0.68 16 36 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 37 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 38 H 0.07 1.18 6.38 -51.93 -0.33 0.85 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 1.94 6.85 -51.93 -0.36 1.59 16 41 H 0.03 0.69 6.56 -51.93 -0.34 0.35 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.10 1.64 6.07 -51.93 -0.32 1.32 16 44 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.68 6.24 -51.93 -0.32 0.35 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -30.71 348.39 -7.64 -38.35 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.92 Total: 1.83 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 0.14 Total: -5.62 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.19 Total: -37.72 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -0.28 Total: -18.10 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.71 -7.64 -38.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.163 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds