Wall clock time and date at job start Tue Mar 31 2020 06:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 H 1.09004 * 109.47551 * 304.98202 * 3 2 1 5 5 C 1.53097 * 109.49274 * 185.03912 * 3 2 1 6 6 C 1.53182 * 109.15717 * 182.49222 * 5 3 2 7 7 H 1.09004 * 109.54367 * 296.94011 * 6 5 3 8 8 C 1.52996 * 109.54815 * 176.76020 * 6 5 3 9 9 C 1.50696 * 109.47472 * 175.17739 * 8 6 5 10 10 O 1.21287 * 119.99868 * 359.97438 * 9 8 6 11 11 N 1.34771 * 120.00122 * 179.97438 * 9 8 6 12 12 C 1.46505 * 120.00035 * 359.97438 * 11 9 8 13 13 C 1.46506 * 120.00092 * 179.97438 * 11 9 8 14 14 H 1.08996 * 109.46660 * 0.02562 * 13 11 9 15 15 C 1.52997 * 109.47289 * 239.99940 * 13 11 9 16 16 C 1.50708 * 109.46796 * 120.00014 * 13 11 9 17 17 H 1.07995 * 119.99755 * 0.02562 * 16 13 11 18 18 C 1.37873 * 119.99729 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99909 * 0.02562 * 18 16 13 20 20 Si 1.86803 * 119.99980 * 179.97438 * 18 16 13 21 21 H 1.48501 * 109.46950 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47111 * 120.00368 * 20 18 16 23 23 H 1.48500 * 109.47074 * 240.00161 * 20 18 16 24 24 C 1.53183 * 109.10871 * 56.84409 * 6 5 3 25 25 C 1.53091 * 109.16327 * 303.06580 * 24 6 5 26 26 O 1.42901 * 109.47929 * 64.99940 * 3 2 1 27 27 H 1.08991 * 109.47222 * 60.00168 * 1 2 3 28 28 H 1.09000 * 109.47022 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47372 * 299.99576 * 1 2 3 30 30 H 1.09004 * 109.47130 * 239.99961 * 2 1 3 31 31 H 1.09004 * 109.47527 * 120.00405 * 2 1 3 32 32 H 1.09005 * 109.60042 * 62.54608 * 5 3 2 33 33 H 1.09001 * 109.45635 * 302.34768 * 5 3 2 34 34 H 1.09000 * 109.47163 * 55.17241 * 8 6 5 35 35 H 1.09005 * 109.47109 * 295.17638 * 8 6 5 36 36 H 1.08999 * 109.46723 * 270.00200 * 12 11 9 37 37 H 1.08997 * 109.46979 * 29.99903 * 12 11 9 38 38 H 1.09005 * 109.46961 * 150.00254 * 12 11 9 39 39 H 1.09002 * 109.47153 * 179.97438 * 15 13 11 40 40 H 1.09001 * 109.46832 * 60.00146 * 15 13 11 41 41 H 1.09004 * 109.47261 * 300.00128 * 15 13 11 42 42 H 0.97002 * 119.99804 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.51848 * 62.97639 * 24 6 5 44 44 H 1.09002 * 109.52246 * 183.16049 * 24 6 5 45 45 H 1.09003 * 109.47895 * 177.58929 * 25 24 6 46 46 H 1.09002 * 109.48097 * 297.61513 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 -0.8420 5 6 3.5658 1.4449 -0.1268 6 6 4.0732 2.8888 -0.0633 7 1 3.6808 3.4508 -0.9109 8 6 5.6025 2.8964 -0.1080 9 6 6.0964 4.3190 -0.1650 10 8 5.3032 5.2366 -0.1700 11 7 7.4194 4.5717 -0.2106 12 6 8.3775 3.4634 -0.2041 13 6 7.8995 5.9547 -0.2666 14 1 7.0481 6.6353 -0.2626 15 6 8.7121 6.1611 -1.5464 16 6 8.7702 6.2331 0.9317 17 1 8.9483 5.4573 1.6615 18 6 9.3391 7.4781 1.0960 19 7 9.1217 8.4229 0.2074 20 14 10.4178 7.8234 2.5816 21 1 10.5036 6.6042 3.4250 22 1 11.7784 8.2071 2.1270 23 1 9.8292 8.9332 3.3734 24 6 3.5955 3.5313 1.2426 25 6 2.0685 3.4484 1.3142 26 8 1.6621 2.0816 1.2210 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.8543 0.9989 -1.0786 33 1 3.9990 0.8703 0.6920 34 1 5.9428 2.3579 -0.9925 35 1 5.9945 2.4113 0.7859 36 1 8.6444 3.2200 0.8243 37 1 7.9276 2.5915 -0.6788 38 1 9.2733 3.7543 -0.7528 39 1 9.0689 7.1902 -1.5882 40 1 8.0823 5.9598 -2.4130 41 1 9.5635 5.4805 -1.5499 42 1 9.5223 9.2988 0.3229 43 1 4.0293 3.0002 2.0898 44 1 3.9052 4.5761 1.2692 45 1 1.7258 3.8657 2.2611 46 1 1.6346 4.0139 0.4895 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777917.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:03 Heat of formation + Delta-G solvation = -107.380062 kcal Electronic energy + Delta-G solvation = -23370.323083 eV Core-core repulsion = 20066.113957 eV Total energy + Delta-G solvation = -3304.209126 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91502 -38.75090 -35.55274 -34.32403 -34.02594 -32.84400 -29.96901 -29.77073 -28.12325 -26.08697 -25.21609 -24.31939 -23.38496 -21.54865 -20.71590 -19.83631 -18.17055 -16.64655 -16.40119 -16.17938 -15.76621 -15.48493 -15.06408 -14.60203 -14.40680 -13.97823 -13.77378 -13.56796 -13.20989 -12.74942 -12.69443 -12.46773 -12.25569 -11.85815 -11.83757 -11.54394 -11.46766 -11.42162 -11.19269 -11.07239 -11.01809 -10.80883 -10.72805 -10.68577 -10.39152 -10.21216 -10.17539 -10.12137 -9.43085 -9.15919 -8.78233 -8.42592 -7.56150 -6.07655 -4.15513 3.25128 3.32928 3.35600 3.43281 3.79515 3.96233 4.38896 4.59420 4.78009 4.89822 4.94220 5.05534 5.14495 5.22917 5.24539 5.33891 5.40575 5.50334 5.58190 5.63159 5.66852 5.71498 5.77250 5.81728 5.86288 5.97945 5.99283 6.03347 6.08618 6.13943 6.22714 6.29991 6.51235 6.54548 6.75886 6.81977 7.06030 7.30490 7.45004 7.53409 7.72241 8.01881 8.20266 8.56004 8.84339 9.09349 9.51391 10.97627 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.031256 B = 0.003463 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.607962 B = 8084.652128 C = 8367.867089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.055 0.945 5 C -0.145 4.145 6 C -0.071 4.071 7 H 0.077 0.923 8 C -0.134 4.134 9 C 0.503 3.497 10 O -0.552 6.552 11 N -0.595 5.595 12 C 0.087 3.913 13 C 0.257 3.743 14 H 0.063 0.937 15 C -0.147 4.147 16 C -0.524 4.524 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.155 4.155 25 C 0.064 3.936 26 O -0.382 6.382 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.011 0.989 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.062 0.938 44 H 0.098 0.902 45 H 0.091 0.909 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.382 -15.822 -1.828 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.073 0.927 5 C -0.183 4.183 6 C -0.090 4.090 7 H 0.095 0.905 8 C -0.174 4.174 9 C 0.290 3.710 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.057 4.057 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.206 4.206 16 C -0.562 4.562 17 H 0.077 0.923 18 C -0.139 4.139 19 N -0.527 5.527 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.193 4.193 25 C -0.012 4.012 26 O -0.302 6.302 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.030 0.970 41 H 0.048 0.952 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.817 -15.225 -1.726 18.757 hybrid contribution 1.096 0.350 0.595 1.295 sum -9.722 -14.875 -1.131 17.806 Atomic orbital electron populations 1.21716 0.95443 1.01256 1.02286 1.21545 0.96547 0.94686 1.02529 1.22090 0.93561 0.93665 0.87370 0.92674 1.22301 0.96129 0.97347 1.02520 1.20904 0.93828 0.95027 0.99194 0.90480 1.21741 0.96396 0.95865 1.03421 1.20414 0.82771 0.90699 0.77143 1.90597 1.54423 1.46852 1.51341 1.48260 1.04666 1.09301 1.70380 1.21545 0.94152 0.88874 1.01127 1.18923 0.95078 0.76502 0.93832 0.91914 1.22094 0.98409 1.04074 0.95975 1.21365 1.29909 0.97635 1.07333 0.92309 1.24899 0.96485 0.95930 0.96539 1.69892 1.44380 1.03663 1.34737 0.86449 0.80046 0.78324 0.82632 1.19831 1.20951 1.20904 1.22358 0.95727 1.04120 0.97072 1.22568 0.94564 0.82314 1.01771 1.87871 1.78708 1.25213 1.38391 0.93016 0.92993 0.91932 0.90834 0.91214 0.91125 0.91096 0.89663 0.89572 0.93393 0.92975 0.90974 0.88841 0.97041 0.95151 0.92768 0.91877 0.88330 0.89126 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.81 37.16 0.36 -0.91 16 2 C -0.12 -1.03 5.64 -26.73 -0.15 -1.19 16 3 C 0.09 1.00 2.64 -26.68 -0.07 0.93 16 4 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.15 -1.58 4.71 -26.59 -0.13 -1.71 16 6 C -0.07 -0.97 1.92 -90.43 -0.17 -1.14 16 7 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 8 C -0.13 -1.93 3.73 -27.89 -0.10 -2.04 16 9 C 0.50 10.09 7.41 -10.99 -0.08 10.01 16 10 O -0.55 -13.04 13.32 5.55 0.07 -12.97 16 11 N -0.59 -12.57 2.75 -175.25 -0.48 -13.05 16 12 C 0.09 1.45 9.48 59.85 0.57 2.01 16 13 C 0.26 6.56 2.64 -69.08 -0.18 6.38 16 14 H 0.06 1.86 6.90 -51.93 -0.36 1.50 16 15 C -0.15 -3.52 8.95 37.16 0.33 -3.19 16 16 C -0.52 -14.20 8.37 -34.44 -0.29 -14.49 16 17 H 0.06 1.58 7.65 -52.49 -0.40 1.18 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.22 11.32 55.43 0.63 -24.59 16 20 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C -0.16 -2.27 5.13 -26.59 -0.14 -2.41 16 25 C 0.06 0.83 6.84 37.20 0.25 1.09 16 26 O -0.38 -4.96 9.94 -35.23 -0.35 -5.31 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.05 7.40 -51.93 -0.38 0.66 16 35 H 0.09 1.15 8.11 -51.93 -0.42 0.72 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 38 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 40 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.03 0.67 6.66 -51.93 -0.35 0.32 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.10 1.75 6.05 -51.93 -0.31 1.43 16 45 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.27 15.07 5.34 5.34 Total: -1.00 -30.55 354.27 -7.94 -38.48 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -8.24 Total: 1.01 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 0.11 Total: -5.00 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.15 Total: -37.64 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.28 Total: -18.28 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.55 -7.94 -38.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777917.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.897 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds