Wall clock time and date at job start Tue Mar 31 2020 06:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46841 * 2 1 4 4 H 1.08992 * 109.48609 * 305.02156 * 3 2 1 5 5 C 1.53095 * 109.47977 * 184.99916 * 3 2 1 6 6 C 1.53181 * 109.16431 * 297.61744 * 5 3 2 7 7 H 1.09004 * 109.53965 * 62.97053 * 6 5 3 8 8 C 1.52992 * 109.54384 * 183.14744 * 6 5 3 9 9 C 1.50706 * 109.47274 * 185.00057 * 8 6 5 10 10 O 1.21281 * 119.99699 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00080 * 180.02562 * 9 8 6 12 12 C 1.46499 * 120.00036 * 359.72107 * 11 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 11 9 8 14 14 H 1.09001 * 109.47060 * 359.71695 * 13 11 9 15 15 C 1.52997 * 109.47289 * 119.71964 * 13 11 9 16 16 C 1.50697 * 109.47015 * 239.72422 * 13 11 9 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 11 18 18 C 1.37881 * 120.00021 * 180.02562 * 16 13 11 19 19 N 1.31512 * 119.99560 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 120.00032 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47104 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47457 * 119.99350 * 20 18 16 23 23 H 1.48496 * 109.46986 * 239.99711 * 20 18 16 24 24 C 1.53173 * 109.03760 * 303.01745 * 6 5 3 25 25 C 1.53094 * 109.16248 * 56.97711 * 24 6 5 26 26 O 1.42902 * 109.41943 * 302.39500 * 25 24 6 27 27 H 1.09000 * 109.46621 * 299.99874 * 1 2 3 28 28 H 1.08997 * 109.47050 * 59.99504 * 1 2 3 29 29 H 1.09000 * 109.46859 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46621 * 240.00126 * 2 1 3 31 31 H 1.08997 * 109.47028 * 119.99941 * 2 1 3 32 32 H 1.08999 * 109.52547 * 177.70894 * 5 3 2 33 33 H 1.08998 * 109.52020 * 57.51919 * 5 3 2 34 34 H 1.09004 * 109.47116 * 65.00408 * 8 6 5 35 35 H 1.08998 * 109.47794 * 305.00320 * 8 6 5 36 36 H 1.09003 * 109.47269 * 270.27384 * 12 11 9 37 37 H 1.08994 * 109.47173 * 30.28203 * 12 11 9 38 38 H 1.09005 * 109.47077 * 150.28374 * 12 11 9 39 39 H 1.09001 * 109.46832 * 60.00146 * 15 13 11 40 40 H 1.09002 * 109.47153 * 179.97438 * 15 13 11 41 41 H 1.08996 * 109.46952 * 300.00127 * 15 13 11 42 42 H 0.97002 * 119.99397 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.52822 * 176.88258 * 24 6 5 44 44 H 1.09005 * 109.52293 * 297.07797 * 24 6 5 45 45 H 1.09003 * 109.47998 * 182.40947 * 25 24 6 46 46 H 1.09004 * 109.48790 * 62.38070 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5658 1.4446 -0.1258 6 6 4.1716 0.7376 1.0906 7 1 3.8517 -0.3043 1.1034 8 6 5.6981 0.8035 1.0131 9 6 6.2935 0.0035 2.1431 10 8 5.5682 -0.5638 2.9323 11 7 7.6319 -0.0814 2.2765 12 6 8.5081 0.5989 1.3196 13 6 8.2107 -0.8596 3.3746 14 1 7.4101 -1.2888 3.9771 15 6 9.0768 -1.9834 2.8022 16 6 9.0596 0.0404 4.2351 17 1 9.1584 1.0872 3.9884 18 6 9.7109 -0.4728 5.3367 19 7 9.5908 -1.7476 5.6367 20 14 10.7625 0.6429 6.4037 21 1 10.7331 2.0230 5.8562 22 1 10.2297 0.6485 7.7898 23 1 12.1612 0.1443 6.4131 24 6 3.6925 1.4383 2.3657 25 6 2.1618 1.4365 2.3952 26 8 1.6632 2.0814 1.2215 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9265 2.4724 -0.1668 33 1 3.8570 0.9188 -1.0351 34 1 6.0215 1.8414 1.0930 35 1 6.0318 0.3913 0.0609 36 1 8.7272 -0.0707 0.4878 37 1 8.0113 1.4937 0.9446 38 1 9.4379 0.8798 1.8143 39 1 9.8774 -1.5541 2.1998 40 1 9.5078 -2.5620 3.6192 41 1 8.4628 -2.6343 2.1799 42 1 10.0493 -2.1087 6.4115 43 1 4.0742 0.9081 3.2382 44 1 4.0557 2.4660 2.3750 45 1 1.8147 1.9715 3.2792 46 1 1.7999 0.4088 2.4268 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:08 Heat of formation + Delta-G solvation = -104.339264 kcal Electronic energy + Delta-G solvation = -23651.152014 eV Core-core repulsion = 20347.074747 eV Total energy + Delta-G solvation = -3304.077267 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.15797 -38.83655 -35.52616 -34.29209 -33.45410 -32.84456 -30.20015 -29.88211 -28.09979 -26.04303 -25.22843 -24.18043 -23.39134 -22.24696 -20.71094 -19.06753 -18.20398 -16.73324 -16.51734 -15.93357 -15.82504 -15.51673 -15.12880 -14.66842 -14.51479 -13.95567 -13.64473 -13.59307 -12.92001 -12.77910 -12.56190 -12.41654 -12.36284 -12.05884 -11.74204 -11.60157 -11.52901 -11.44569 -11.20936 -11.04983 -10.97063 -10.84555 -10.70067 -10.65738 -10.42748 -10.20889 -10.18093 -9.93798 -9.36408 -9.17137 -8.77980 -8.42746 -7.56240 -6.08191 -4.16097 3.24822 3.32716 3.35249 3.43486 3.89007 3.98184 4.38876 4.64476 4.79606 4.85637 4.92606 5.02312 5.10242 5.22950 5.32964 5.41150 5.42732 5.50634 5.54834 5.60751 5.68370 5.75177 5.77679 5.85600 5.88266 5.95110 6.03537 6.04798 6.10711 6.18816 6.23550 6.37140 6.51618 6.56416 6.75289 6.83546 7.07120 7.29543 7.44174 7.54556 7.72042 8.01901 8.20306 8.56082 8.83648 9.09620 9.50697 10.97087 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028549 B = 0.003702 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.540226 B = 7561.161274 C = 7755.075998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.161 4.161 3 C 0.093 3.907 4 H 0.097 0.903 5 C -0.146 4.146 6 C -0.071 4.071 7 H 0.080 0.920 8 C -0.135 4.135 9 C 0.503 3.497 10 O -0.553 6.553 11 N -0.595 5.595 12 C 0.084 3.916 13 C 0.257 3.743 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.525 4.525 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.154 4.154 25 C 0.059 3.941 26 O -0.379 6.379 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.093 0.907 41 H 0.010 0.990 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.089 0.911 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 5.442 -12.924 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 C 0.035 3.965 4 H 0.115 0.885 5 C -0.183 4.183 6 C -0.089 4.089 7 H 0.098 0.902 8 C -0.175 4.175 9 C 0.290 3.710 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.060 4.060 13 C 0.157 3.843 14 H 0.081 0.919 15 C -0.204 4.204 16 C -0.564 4.564 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.192 4.192 25 C -0.018 4.018 26 O -0.298 6.298 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.029 0.971 42 H 0.072 0.928 43 H 0.116 0.884 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.723 5.168 -12.351 17.795 hybrid contribution 1.082 0.346 0.494 1.239 sum -10.641 5.514 -11.857 16.859 Atomic orbital electron populations 1.21696 0.95404 1.01282 1.02074 1.22217 0.96754 0.97641 1.03239 1.22158 0.93691 0.93057 0.87614 0.88539 1.22280 0.95852 1.01593 0.98607 1.20922 0.93281 1.00412 0.94325 0.90213 1.21754 0.96068 1.01188 0.98502 1.20424 0.82701 0.81740 0.86151 1.90595 1.59616 1.47925 1.45085 1.48259 1.04788 1.50009 1.29512 1.21585 0.96362 0.95622 0.92444 1.18916 0.93518 0.88927 0.82957 0.91944 1.22079 0.98731 0.99072 1.00567 1.21364 1.29214 0.95489 1.10297 0.92249 1.24900 0.96550 0.95153 0.97226 1.69894 1.43180 1.12181 1.27322 0.86448 0.79915 0.80694 0.80390 1.19821 1.20894 1.20949 1.22343 0.95760 1.01132 0.99964 1.22601 0.93795 0.97772 0.87606 1.87935 1.74795 1.53329 1.13768 0.92233 0.92972 0.92995 0.91163 0.90704 0.91124 0.91115 0.89569 0.89736 0.94031 0.92825 0.90202 0.95239 0.88894 0.97115 0.92759 0.88432 0.91936 0.89260 0.92877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.81 37.16 0.36 -0.99 16 2 C -0.16 -1.62 4.74 -26.73 -0.13 -1.75 16 3 C 0.09 0.99 3.29 -26.68 -0.09 0.90 16 4 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.56 4.93 -26.59 -0.13 -1.69 16 6 C -0.07 -0.95 1.61 -90.44 -0.15 -1.10 16 7 H 0.08 1.18 6.55 -51.93 -0.34 0.84 16 8 C -0.13 -1.94 3.73 -27.88 -0.10 -2.04 16 9 C 0.50 10.06 7.41 -10.98 -0.08 9.98 16 10 O -0.55 -12.99 13.33 5.56 0.07 -12.91 16 11 N -0.59 -12.54 2.75 -175.26 -0.48 -13.03 16 12 C 0.08 1.39 9.23 59.85 0.55 1.95 16 13 C 0.26 6.56 2.64 -69.08 -0.18 6.37 16 14 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 15 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 16 C -0.52 -14.16 7.99 -34.44 -0.28 -14.43 16 17 H 0.06 1.58 7.33 -52.49 -0.38 1.20 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.13 11.32 55.43 0.63 -24.50 16 20 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.15 -2.24 5.13 -26.59 -0.14 -2.38 16 25 C 0.06 0.75 6.52 37.21 0.24 0.99 16 26 O -0.38 -4.85 10.13 -35.23 -0.36 -5.21 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.86 4.98 -51.93 -0.26 0.61 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.14 7.41 -51.93 -0.38 0.75 16 35 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.72 6.45 -51.93 -0.33 0.39 16 38 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.10 1.72 6.07 -51.93 -0.32 1.40 16 44 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.67 6.24 -51.93 -0.32 0.35 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -30.32 348.03 -7.75 -38.07 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.97 Total: 2.05 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 0.13 Total: -5.71 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.14 Total: -37.53 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.28 Total: -18.12 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.32 -7.75 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.266 kcal (2) G-P(sol) polarization free energy of solvation -30.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds