Wall clock time and date at job start Tue Mar 31 2020 06:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47327 * 2 1 4 4 H 1.08995 * 109.47950 * 304.97810 * 3 2 1 5 5 C 1.53095 * 109.48744 * 184.95067 * 3 2 1 6 6 C 1.53185 * 109.15904 * 182.40658 * 5 3 2 7 7 H 1.09002 * 109.61217 * 297.06971 * 6 5 3 8 8 C 1.52991 * 109.54138 * 176.84851 * 6 5 3 9 9 C 1.50702 * 109.47286 * 175.44072 * 8 6 5 10 10 O 1.21283 * 119.99478 * 0.02562 * 9 8 6 11 11 N 1.34773 * 120.00430 * 179.97438 * 9 8 6 12 12 C 1.46506 * 119.99969 * 0.02562 * 11 9 8 13 13 C 1.46499 * 120.00036 * 179.72648 * 11 9 8 14 14 H 1.08998 * 109.47061 * 0.27944 * 13 11 9 15 15 C 1.53002 * 109.47216 * 120.28122 * 13 11 9 16 16 C 1.50702 * 109.46950 * 240.27755 * 13 11 9 17 17 H 1.07994 * 120.00187 * 0.02562 * 16 13 11 18 18 C 1.37879 * 120.00033 * 180.02562 * 16 13 11 19 19 N 1.31522 * 119.99787 * 0.02562 * 18 16 13 20 20 Si 1.86795 * 120.00370 * 179.97438 * 18 16 13 21 21 H 1.48507 * 109.46653 * 60.00161 * 20 18 16 22 22 H 1.48504 * 109.47167 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47187 * 300.00098 * 20 18 16 24 24 C 1.53179 * 109.03618 * 56.97942 * 6 5 3 25 25 C 1.53088 * 109.16250 * 303.02042 * 24 6 5 26 26 O 1.42898 * 109.41937 * 57.61216 * 25 24 6 27 27 H 1.08992 * 109.47332 * 59.99235 * 1 2 3 28 28 H 1.08993 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.46618 * 299.99765 * 1 2 3 30 30 H 1.09007 * 109.47048 * 240.00555 * 2 1 3 31 31 H 1.09000 * 109.47634 * 120.00172 * 2 1 3 32 32 H 1.08994 * 109.51986 * 62.50333 * 5 3 2 33 33 H 1.09000 * 109.52391 * 302.30629 * 5 3 2 34 34 H 1.09009 * 109.47500 * 55.44424 * 8 6 5 35 35 H 1.09001 * 109.47172 * 295.44090 * 8 6 5 36 36 H 1.08999 * 109.46892 * 269.72362 * 12 11 9 37 37 H 1.09000 * 109.46803 * 29.71536 * 12 11 9 38 38 H 1.09000 * 109.47214 * 149.72329 * 12 11 9 39 39 H 1.08996 * 109.46989 * 59.99467 * 15 13 11 40 40 H 1.08996 * 109.47401 * 180.02562 * 15 13 11 41 41 H 1.09002 * 109.46768 * 300.00122 * 15 13 11 42 42 H 0.97000 * 119.99632 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.51987 * 62.92764 * 24 6 5 44 44 H 1.08999 * 109.51717 * 183.11496 * 24 6 5 45 45 H 1.09007 * 109.47500 * 177.59331 * 25 24 6 46 46 H 1.09001 * 109.48265 * 297.61008 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8420 5 6 3.5659 1.4447 -0.1245 6 6 4.0733 2.8888 -0.0633 7 1 3.6809 3.4507 -0.9109 8 6 5.6025 2.8963 -0.1080 9 6 6.0966 4.3190 -0.1606 10 8 5.3036 5.2366 -0.1618 11 7 7.4197 4.5717 -0.2054 12 6 8.3777 3.4633 -0.2035 13 6 7.8998 5.9546 -0.2626 14 1 7.0485 6.6353 -0.2556 15 6 8.7884 6.2366 0.9505 16 6 8.6954 6.1583 -1.5262 17 1 8.8296 5.3396 -2.2177 18 6 9.2519 7.3898 -1.7995 19 7 9.0889 8.3866 -0.9572 20 14 10.2387 7.6421 -3.3654 21 1 9.3765 7.3687 -4.5432 22 1 10.7252 9.0440 -3.4234 23 1 11.3982 6.7144 -3.3747 24 6 3.5956 3.5312 1.2427 25 6 2.0687 3.4483 1.3144 26 8 1.6622 2.0815 1.2211 27 1 -0.3633 0.5139 -0.8898 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.8543 0.9973 -1.0757 33 1 3.9991 0.8714 0.6951 34 1 5.9428 2.3605 -0.9943 35 1 5.9945 2.4083 0.7844 36 1 8.6485 3.2189 0.8236 37 1 7.9257 2.5917 -0.6772 38 1 9.2713 3.7544 -0.7555 39 1 9.6396 5.5559 0.9434 40 1 9.1452 7.2657 0.9082 41 1 8.2130 6.0893 1.8644 42 1 9.4802 9.2531 -1.1497 43 1 4.0295 3.0000 2.0898 44 1 3.9054 4.5759 1.2692 45 1 1.7261 3.8656 2.2613 46 1 1.6348 4.0139 0.4898 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330777919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:13 Heat of formation + Delta-G solvation = -108.028895 kcal Electronic energy + Delta-G solvation = -23351.801545 eV Core-core repulsion = 20047.564283 eV Total energy + Delta-G solvation = -3304.237262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.92327 -38.75182 -35.54767 -34.32752 -34.03101 -32.84446 -29.97669 -29.77534 -28.12876 -26.04630 -25.22738 -24.32125 -23.39607 -21.55603 -20.73251 -19.83026 -18.18408 -16.63474 -16.45731 -16.15971 -15.78900 -15.41070 -15.11562 -14.61267 -14.40517 -13.98334 -13.77706 -13.54852 -13.24431 -12.76349 -12.58594 -12.40662 -12.30220 -11.86415 -11.83091 -11.59481 -11.49375 -11.39288 -11.19355 -11.05448 -11.04869 -10.85249 -10.73878 -10.64199 -10.37855 -10.26362 -10.16934 -10.14480 -9.44488 -9.17591 -8.78669 -8.42010 -7.56311 -6.07883 -4.16080 3.26586 3.31918 3.32867 3.43212 3.78419 3.96234 4.38340 4.59449 4.77503 4.89392 4.93628 5.05131 5.14253 5.22682 5.24225 5.33351 5.40956 5.49569 5.56932 5.63584 5.66070 5.72869 5.77543 5.81125 5.86006 5.97698 5.99542 6.01583 6.05523 6.13522 6.21777 6.36757 6.49220 6.51725 6.75743 6.84061 7.07293 7.29074 7.44287 7.54469 7.71864 8.01979 8.20469 8.55907 8.83112 9.09415 9.50555 10.97317 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032006 B = 0.003374 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.629112 B = 8296.482204 C = 8441.809654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.145 4.145 6 C -0.071 4.071 7 H 0.078 0.922 8 C -0.134 4.134 9 C 0.503 3.497 10 O -0.552 6.552 11 N -0.595 5.595 12 C 0.084 3.916 13 C 0.258 3.742 14 H 0.063 0.937 15 C -0.146 4.146 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.065 3.935 19 N -0.888 5.888 20 Si 0.898 3.102 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.155 4.155 25 C 0.064 3.936 26 O -0.383 6.383 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.028 0.972 40 H 0.093 0.907 41 H 0.010 0.990 42 H 0.264 0.736 43 H 0.062 0.938 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.208 -15.627 2.912 18.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.183 4.183 6 C -0.090 4.090 7 H 0.096 0.904 8 C -0.174 4.174 9 C 0.290 3.710 10 O -0.432 6.432 11 N -0.326 5.326 12 C -0.060 4.060 13 C 0.158 3.842 14 H 0.080 0.920 15 C -0.204 4.204 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.138 4.138 19 N -0.526 5.526 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.192 4.192 25 C -0.012 4.012 26 O -0.302 6.302 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.048 0.952 40 H 0.111 0.889 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.639 -15.019 3.086 18.662 hybrid contribution 1.029 0.270 -1.086 1.520 sum -9.609 -14.750 2.000 17.717 Atomic orbital electron populations 1.21716 0.95440 1.01260 1.02289 1.21546 0.96552 0.94672 1.02534 1.22101 0.93575 0.93676 0.87351 0.92611 1.22298 0.96098 0.97332 1.02554 1.20911 0.93858 0.95054 0.99197 0.90374 1.21738 0.96370 0.95886 1.03410 1.20420 0.82783 0.90699 0.77120 1.90595 1.54409 1.46857 1.51338 1.48262 1.04692 1.09310 1.70309 1.21589 0.94832 0.89139 1.00459 1.18906 0.94842 0.76532 0.93969 0.91956 1.22076 0.98493 1.04121 0.95727 1.21294 1.33209 0.96798 1.05263 0.92371 1.24897 0.96244 0.95745 0.96891 1.69875 1.44818 1.02128 1.35770 0.86558 0.80198 0.77195 0.83443 1.20255 1.21150 1.20246 1.22355 0.95787 1.04000 0.97072 1.22563 0.94536 0.82380 1.01762 1.87868 1.78737 1.25182 1.38425 0.93004 0.92987 0.91942 0.90809 0.91227 0.91090 0.91113 0.89539 0.89703 0.93988 0.92835 0.90214 0.95236 0.88898 0.97095 0.92633 0.91964 0.88423 0.89166 0.93282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.09 1.00 2.64 -26.68 -0.07 0.93 16 4 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 5 C -0.15 -1.59 4.71 -26.59 -0.13 -1.71 16 6 C -0.07 -0.98 1.92 -90.44 -0.17 -1.15 16 7 H 0.08 1.20 7.96 -51.93 -0.41 0.79 16 8 C -0.13 -1.93 3.73 -27.89 -0.10 -2.04 16 9 C 0.50 10.11 7.41 -10.99 -0.08 10.02 16 10 O -0.55 -13.05 13.30 5.55 0.07 -12.98 16 11 N -0.59 -12.58 2.75 -175.26 -0.48 -13.06 16 12 C 0.08 1.39 9.24 59.85 0.55 1.95 16 13 C 0.26 6.59 2.64 -69.08 -0.18 6.40 16 14 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 15 C -0.15 -3.51 8.97 37.16 0.33 -3.18 16 16 C -0.53 -14.24 7.99 -34.44 -0.28 -14.52 16 17 H 0.06 1.54 7.33 -52.49 -0.38 1.16 16 18 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.89 -25.18 11.32 55.43 0.63 -24.56 16 20 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.15 -2.19 5.12 -26.59 -0.14 -2.33 16 25 C 0.06 0.81 6.84 37.20 0.25 1.07 16 26 O -0.38 -4.90 9.94 -35.23 -0.35 -5.25 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.11 7.40 -51.92 -0.38 0.72 16 35 H 0.08 1.09 8.11 -51.93 -0.42 0.67 16 36 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.72 6.43 -51.93 -0.33 0.38 16 38 H 0.08 1.42 7.02 -51.93 -0.36 1.06 16 39 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 40 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 41 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 42 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.10 1.67 6.03 -51.93 -0.31 1.35 16 45 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -30.43 354.90 -7.99 -38.42 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -8.30 Total: 1.06 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 0.11 Total: -4.98 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.14 Total: -37.62 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.28 Total: -18.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.43 -7.99 -38.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330777919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.609 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds