Wall clock time and date at job start Tue Mar 31 2020 06:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46700 * 2 1 4 4 H 1.08994 * 109.48198 * 304.97790 * 3 2 1 5 5 C 1.53105 * 109.48944 * 185.03858 * 3 2 1 6 6 C 1.53176 * 109.15686 * 182.49132 * 5 3 2 7 7 H 1.08998 * 109.54253 * 296.94070 * 6 5 3 8 8 C 1.52995 * 109.54470 * 176.76024 * 6 5 3 9 9 C 1.50702 * 109.47241 * 175.18134 * 8 6 5 10 10 O 1.21273 * 119.99809 * 0.02562 * 9 8 6 11 11 N 1.34778 * 120.00009 * 179.97438 * 9 8 6 12 12 C 1.46506 * 120.00058 * 0.02562 * 11 9 8 13 13 C 1.52997 * 109.47289 * 89.99676 * 12 11 9 14 14 C 1.46493 * 120.00131 * 179.97438 * 11 9 8 15 15 C 1.50698 * 109.47208 * 270.00311 * 14 11 9 16 16 H 1.08002 * 120.00208 * 359.97438 * 15 14 11 17 17 C 1.37886 * 119.99967 * 180.02562 * 15 14 11 18 18 N 1.31512 * 119.99955 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00095 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47055 * 89.99943 * 19 17 15 21 21 H 1.48498 * 109.47435 * 210.00418 * 19 17 15 22 22 H 1.48505 * 109.47003 * 330.00249 * 19 17 15 23 23 C 1.53180 * 109.10570 * 56.85122 * 6 5 3 24 24 C 1.53090 * 109.16304 * 303.06090 * 23 6 5 25 25 O 1.42899 * 109.41570 * 57.61062 * 24 23 6 26 26 H 1.09002 * 109.46565 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46950 * 299.99630 * 1 2 3 28 28 H 1.08992 * 109.46985 * 59.99848 * 1 2 3 29 29 H 1.09000 * 109.47241 * 240.00779 * 2 1 3 30 30 H 1.08987 * 109.47436 * 120.00036 * 2 1 3 31 31 H 1.09009 * 109.59744 * 62.54592 * 5 3 2 32 32 H 1.08996 * 109.45597 * 302.35610 * 5 3 2 33 33 H 1.09000 * 109.47522 * 55.17565 * 8 6 5 34 34 H 1.09009 * 109.47050 * 295.18236 * 8 6 5 35 35 H 1.08998 * 109.46566 * 329.99410 * 12 11 9 36 36 H 1.08996 * 109.46660 * 210.00390 * 12 11 9 37 37 H 1.09002 * 109.47153 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.46832 * 60.00146 * 13 12 11 39 39 H 1.09004 * 109.47261 * 300.00128 * 13 12 11 40 40 H 1.09007 * 109.47237 * 30.00232 * 14 11 9 41 41 H 1.08995 * 109.47637 * 150.00075 * 14 11 9 42 42 H 0.96996 * 120.00006 * 179.97438 * 18 17 15 43 43 H 1.08997 * 109.52505 * 62.97112 * 23 6 5 44 44 H 1.09005 * 109.52332 * 183.15923 * 23 6 5 45 45 H 1.09001 * 109.48492 * 177.59715 * 24 23 6 46 46 H 1.09003 * 109.48166 * 297.61783 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9816 -0.8419 5 6 3.5658 1.4451 -0.1268 6 6 4.0731 2.8890 -0.0634 7 1 3.6807 3.4508 -0.9109 8 6 5.6024 2.8966 -0.1081 9 6 6.0962 4.3192 -0.1650 10 8 5.3031 5.2367 -0.1689 11 7 7.4193 4.5720 -0.2105 12 6 8.3774 3.4637 -0.2052 13 6 8.6695 3.0351 -1.6446 14 6 7.8994 5.9549 -0.2664 15 6 8.0234 6.3858 -1.7052 16 1 7.7703 5.6982 -2.4986 17 6 8.4609 7.6577 -2.0086 18 7 8.5696 8.0336 -3.2642 19 14 8.8993 8.8469 -0.6364 20 1 10.3375 8.7016 -0.2962 21 1 8.6344 10.2380 -1.0834 22 1 8.0745 8.5463 0.5614 23 6 3.5954 3.5313 1.2426 24 6 2.0685 3.4484 1.3143 25 8 1.6621 2.0816 1.2210 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8543 0.9991 -1.0787 32 1 3.9990 0.8704 0.6919 33 1 5.9428 2.3581 -0.9925 34 1 5.9944 2.4114 0.7859 35 1 7.9570 2.6227 0.3462 36 1 9.3025 3.7855 0.2730 37 1 9.3827 2.2108 -1.6406 38 1 9.0899 3.8762 -2.1959 39 1 7.7443 2.7132 -2.1227 40 1 7.1927 6.6060 0.2482 41 1 8.8735 6.0213 0.2179 42 1 8.8771 8.9285 -3.4777 43 1 4.0293 3.0002 2.0898 44 1 3.9051 4.5761 1.2692 45 1 1.7258 3.8657 2.2612 46 1 1.6346 4.0139 0.4897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330779947.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:22 Heat of formation + Delta-G solvation = -107.731771 kcal Electronic energy + Delta-G solvation = -23438.388201 eV Core-core repulsion = 20134.163824 eV Total energy + Delta-G solvation = -3304.224377 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.96903 -38.82569 -35.56000 -34.43619 -34.03307 -32.64034 -30.25216 -29.84979 -29.18648 -27.30660 -24.39666 -23.50203 -22.73639 -22.18451 -21.02042 -19.97318 -18.26816 -16.94319 -16.52182 -16.34641 -15.87413 -15.56971 -14.99508 -14.54150 -14.50423 -13.86141 -13.80227 -13.59311 -13.29729 -13.16666 -12.73726 -12.63049 -12.41899 -12.35644 -11.84602 -11.77157 -11.63393 -11.43815 -11.39762 -11.17675 -11.09393 -10.94450 -10.77590 -10.65315 -10.40297 -10.35290 -10.17431 -10.07636 -9.50525 -9.42532 -8.85442 -8.58723 -7.69992 -6.08354 -4.06358 3.26402 3.34844 3.36896 3.39201 3.77557 3.83977 4.39912 4.55465 4.76062 4.87374 4.92563 5.03114 5.08162 5.21405 5.25547 5.31265 5.32575 5.39456 5.47939 5.54155 5.60798 5.65185 5.75021 5.77762 5.79237 5.81216 5.85018 5.93568 5.96764 6.00266 6.12686 6.14040 6.20790 6.30535 6.45187 6.49972 6.67592 6.82714 6.99079 7.27966 7.38091 7.62416 8.28457 8.48212 8.94401 9.02077 9.52485 11.04934 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.003783 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.587805 B = 7400.165117 C = 7837.142641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.090 3.910 4 H 0.056 0.944 5 C -0.145 4.145 6 C -0.072 4.072 7 H 0.079 0.921 8 C -0.134 4.134 9 C 0.508 3.492 10 O -0.540 6.540 11 N -0.596 5.596 12 C 0.112 3.888 13 C -0.171 4.171 14 C 0.215 3.785 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.071 3.929 18 N -0.899 5.899 19 Si 0.874 3.126 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.264 1.264 23 C -0.154 4.154 24 C 0.064 3.936 25 O -0.382 6.382 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.049 0.951 40 H 0.040 0.960 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.843 -16.434 8.184 20.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.182 4.182 6 C -0.091 4.091 7 H 0.098 0.902 8 C -0.174 4.174 9 C 0.296 3.704 10 O -0.417 6.417 11 N -0.327 5.327 12 C -0.012 4.012 13 C -0.229 4.229 14 C 0.094 3.906 15 C -0.563 4.563 16 H 0.094 0.906 17 C -0.131 4.131 18 N -0.537 5.537 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.192 4.192 24 C -0.013 4.013 25 O -0.302 6.302 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.293 -15.868 8.218 20.142 hybrid contribution 0.718 0.869 0.209 1.147 sum -8.574 -14.999 8.427 19.223 Atomic orbital electron populations 1.21719 0.95435 1.01263 1.02297 1.21543 0.96561 0.94644 1.02534 1.22104 0.93576 0.93699 0.87348 0.92566 1.22293 0.96111 0.97251 1.02586 1.20922 0.93795 0.95177 0.99242 0.90235 1.21762 0.96439 0.95667 1.03524 1.20349 0.82434 0.90760 0.76903 1.90615 1.54165 1.46872 1.50095 1.47990 1.05019 1.08215 1.71493 1.21404 0.93380 0.89191 0.97217 1.22232 1.01202 1.01949 0.97520 1.19654 0.94269 0.78294 0.98339 1.21352 1.44563 0.99323 0.91044 0.90599 1.24869 0.95104 0.97771 0.95366 1.69893 1.47147 1.19501 1.17180 0.86875 0.78985 0.80975 0.83069 1.20188 1.21015 1.18892 1.22355 0.95899 1.03873 0.97065 1.22558 0.94479 0.82448 1.01779 1.87865 1.78731 1.25132 1.38454 0.92984 0.91959 0.92976 0.90775 0.91249 0.90999 0.91156 0.89333 0.89697 0.91788 0.90891 0.92833 0.90267 0.93185 0.94224 0.95914 0.92624 0.91986 0.88530 0.89193 0.93222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.04 5.64 -26.72 -0.15 -1.19 16 3 C 0.09 1.00 2.64 -26.67 -0.07 0.93 16 4 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.14 -1.57 4.71 -26.59 -0.13 -1.70 16 6 C -0.07 -0.99 1.92 -90.44 -0.17 -1.16 16 7 H 0.08 1.25 7.96 -51.93 -0.41 0.84 16 8 C -0.13 -1.90 3.73 -27.88 -0.10 -2.00 16 9 C 0.51 10.01 7.41 -10.98 -0.08 9.92 16 10 O -0.54 -12.69 13.56 5.56 0.08 -12.62 16 11 N -0.60 -12.00 2.46 -175.07 -0.43 -12.43 16 12 C 0.11 1.72 5.98 -4.04 -0.02 1.70 16 13 C -0.17 -2.63 10.24 37.16 0.38 -2.25 16 14 C 0.22 5.21 4.27 -5.20 -0.02 5.19 16 15 C -0.52 -14.86 9.47 -34.44 -0.33 -15.18 16 16 H 0.08 2.35 7.66 -52.49 -0.40 1.95 16 17 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 18 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 19 Si 0.87 21.53 27.47 -169.99 -4.67 16.87 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 23 C -0.15 -2.14 5.13 -26.59 -0.14 -2.27 16 24 C 0.06 0.80 6.84 37.20 0.25 1.06 16 25 O -0.38 -4.85 9.94 -35.23 -0.35 -5.20 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.62 8.14 -51.94 -0.42 0.20 16 31 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.09 1.15 7.19 -51.93 -0.37 0.78 16 34 H 0.08 1.02 7.40 -51.92 -0.38 0.64 16 35 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 36 H 0.07 1.07 7.89 -51.93 -0.41 0.66 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.51 7.25 -51.93 -0.38 1.14 16 39 H 0.05 0.76 7.22 -51.93 -0.38 0.38 16 40 H 0.04 1.04 6.48 -51.93 -0.34 0.70 16 41 H 0.02 0.52 7.32 -51.93 -0.38 0.14 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.60 6.05 -51.93 -0.31 1.29 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 355.97 15.07 5.36 5.36 Total: -1.00 -32.75 355.97 -7.87 -40.62 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.32 Total: 0.17 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -0.31 Total: -5.92 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.34 Total: -39.28 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.27 Total: -17.82 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.75 -7.87 -40.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330779947.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.112 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds