Wall clock time and date at job start Tue Mar 31 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46986 * 2 1 4 4 H 1.09008 * 109.48561 * 54.97000 * 3 2 1 5 5 C 1.53087 * 109.47926 * 174.99922 * 3 2 1 6 6 C 1.53173 * 109.16331 * 177.59394 * 5 3 2 7 7 H 1.08998 * 109.54659 * 183.06153 * 6 5 3 8 8 C 1.53000 * 109.54743 * 62.88661 * 6 5 3 9 9 C 1.50694 * 109.47706 * 175.17886 * 8 6 5 10 10 O 1.21279 * 119.99580 * 359.97438 * 9 8 6 11 11 N 1.34781 * 120.00287 * 180.02562 * 9 8 6 12 12 C 1.46499 * 119.99786 * 359.97438 * 11 9 8 13 13 C 1.53000 * 109.46840 * 90.00416 * 12 11 9 14 14 C 1.46504 * 119.99832 * 180.02562 * 11 9 8 15 15 C 1.50704 * 109.46773 * 269.99817 * 14 11 9 16 16 H 1.07998 * 119.99721 * 0.02562 * 15 14 11 17 17 C 1.37880 * 119.99850 * 180.02562 * 15 14 11 18 18 N 1.31513 * 119.99692 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99728 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47360 * 60.00339 * 19 17 15 21 21 H 1.48498 * 109.46962 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47440 * 300.00071 * 19 17 15 23 23 C 1.53174 * 109.10888 * 302.97422 * 6 5 3 24 24 C 1.53283 * 109.06602 * 56.94304 * 23 6 5 25 25 O 1.42900 * 109.48281 * 294.94547 * 3 2 1 26 26 H 1.08996 * 109.46938 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47248 * 299.99746 * 1 2 3 28 28 H 1.08996 * 109.46812 * 60.00207 * 1 2 3 29 29 H 1.08996 * 109.46821 * 240.00029 * 2 1 3 30 30 H 1.08996 * 109.46812 * 119.99792 * 2 1 3 31 31 H 1.09001 * 109.52416 * 57.68470 * 5 3 2 32 32 H 1.09003 * 109.57542 * 297.52910 * 5 3 2 33 33 H 1.09000 * 109.47090 * 55.17693 * 8 6 5 34 34 H 1.09005 * 109.47032 * 295.18102 * 8 6 5 35 35 H 1.09002 * 109.47391 * 330.00086 * 12 11 9 36 36 H 1.09001 * 109.46813 * 210.00142 * 12 11 9 37 37 H 1.09004 * 109.46724 * 180.02562 * 13 12 11 38 38 H 1.09001 * 109.47194 * 299.99493 * 13 12 11 39 39 H 1.08992 * 109.47399 * 59.99666 * 13 12 11 40 40 H 1.08992 * 109.47334 * 29.99480 * 14 11 9 41 41 H 1.08994 * 109.46680 * 150.00103 * 14 11 9 42 42 H 0.96996 * 119.99637 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.52557 * 176.92900 * 23 6 5 44 44 H 1.08993 * 109.52468 * 297.11814 * 23 6 5 45 45 H 1.08994 * 109.46189 * 182.45046 * 24 23 6 46 46 H 1.08998 * 109.45640 * 62.43593 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6051 1.9820 0.8415 5 6 3.5657 1.4446 0.1258 6 6 4.0733 2.8885 0.0646 7 1 5.1628 2.8938 0.0990 8 6 3.5200 3.6765 1.2536 9 6 4.1133 5.0617 1.2583 10 8 4.9016 5.3866 0.3957 11 7 3.7688 5.9392 2.2215 12 6 2.8171 5.5465 3.2637 13 6 3.5764 4.9395 4.4452 14 6 4.3453 7.2861 2.2256 15 6 5.6179 7.2853 3.0329 16 1 5.9629 6.3727 3.4962 17 6 6.3416 8.4496 3.1801 18 7 5.9211 9.5609 2.6164 19 14 7.9186 8.4487 4.1813 20 1 8.8871 7.4981 3.5786 21 1 8.5023 9.8141 4.1864 22 1 7.6197 8.0335 5.5754 23 6 3.5988 3.5319 -1.2419 24 6 2.0700 3.4480 -1.3150 25 8 1.6632 2.0813 -1.2215 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.9996 0.8709 -0.6932 32 1 3.8544 0.9971 1.0769 33 1 3.7812 3.1663 2.1808 34 1 2.4354 3.7461 1.1703 35 1 2.1214 4.8099 2.8617 36 1 2.2637 6.4235 3.5995 37 1 2.8682 4.6469 5.2204 38 1 4.1298 4.0624 4.1094 39 1 4.2720 5.6760 4.8472 40 1 4.5644 7.5906 1.2023 41 1 3.6347 7.9840 2.6682 42 1 6.4300 10.3800 2.7202 43 1 3.9099 4.5763 -1.2678 44 1 4.0332 3.0004 -2.0885 45 1 1.7282 3.8650 -2.2622 46 1 1.6355 4.0136 -0.4907 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330779948.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:27 Heat of formation + Delta-G solvation = -108.196558 kcal Electronic energy + Delta-G solvation = -23838.138577 eV Core-core repulsion = 20533.894045 eV Total energy + Delta-G solvation = -3304.244532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21171 -38.63553 -35.44911 -34.31833 -34.00697 -32.72483 -30.00258 -29.81223 -28.87673 -26.72202 -24.79381 -23.56843 -22.75609 -22.64839 -21.43550 -19.34091 -17.93261 -16.64284 -16.45447 -16.38602 -16.00318 -15.28450 -15.16406 -14.45420 -14.34038 -13.89036 -13.74095 -13.51735 -13.50214 -13.15037 -12.99910 -12.46798 -12.26314 -12.14159 -11.75608 -11.70266 -11.48145 -11.32084 -11.29030 -11.12246 -11.10599 -10.94878 -10.89256 -10.69779 -10.48543 -10.37280 -10.06645 -10.05010 -9.57402 -9.24435 -8.77469 -8.42467 -7.64327 -6.03717 -4.07767 3.30987 3.35759 3.37189 3.45809 3.78725 3.96142 4.44546 4.57468 4.79027 4.89911 4.98163 5.02902 5.08139 5.24226 5.28817 5.29958 5.33455 5.35387 5.48621 5.55181 5.63040 5.68495 5.71427 5.78013 5.78925 5.83790 5.85741 5.92699 5.98512 6.10433 6.13567 6.20820 6.30363 6.34541 6.41261 6.52829 6.76221 7.08115 7.28953 7.45062 7.57819 7.92969 8.24993 8.45167 8.91555 9.12863 9.56990 11.04450 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.027711 B = 0.004002 C = 0.003854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.202317 B = 6995.580755 C = 7262.977875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.088 3.912 4 H 0.058 0.942 5 C -0.145 4.145 6 C -0.072 4.072 7 H 0.082 0.918 8 C -0.142 4.142 9 C 0.505 3.495 10 O -0.539 6.539 11 N -0.599 5.599 12 C 0.112 3.888 13 C -0.170 4.170 14 C 0.246 3.754 15 C -0.522 4.522 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.896 5.896 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.155 4.155 24 C 0.060 3.940 25 O -0.381 6.381 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.052 0.948 38 H 0.048 0.952 39 H 0.075 0.925 40 H 0.042 0.958 41 H 0.030 0.970 42 H 0.263 0.737 43 H 0.098 0.902 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 -16.627 -2.192 19.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.031 3.969 4 H 0.076 0.924 5 C -0.183 4.183 6 C -0.091 4.091 7 H 0.101 0.899 8 C -0.182 4.182 9 C 0.292 3.708 10 O -0.417 6.417 11 N -0.331 5.331 12 C -0.013 4.013 13 C -0.228 4.228 14 C 0.127 3.873 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.142 4.142 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.203 1.203 23 C -0.192 4.192 24 C -0.016 4.016 25 O -0.300 6.300 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.094 0.906 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.116 0.884 44 H 0.084 0.916 45 H 0.108 0.892 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.324 -16.317 -2.808 19.511 hybrid contribution 1.110 0.293 0.989 1.516 sum -9.213 -16.023 -1.818 18.573 Atomic orbital electron populations 1.21719 0.95424 1.01266 1.02304 1.21553 0.96563 0.94731 1.02514 1.22147 0.93743 0.93655 0.87403 0.92434 1.22265 0.96165 0.97219 1.02606 1.20899 1.01328 0.92881 0.93989 0.89938 1.21913 1.01327 0.94915 1.00051 1.20296 0.82199 0.86315 0.81950 1.90624 1.34864 1.78547 1.37713 1.48295 1.43564 1.15805 1.25452 1.21368 0.91323 0.99620 0.88948 1.22226 1.01061 1.01536 0.97970 1.19263 0.93171 0.76239 0.98632 1.21406 1.07666 0.95225 1.31813 0.92440 1.24936 0.97812 0.95450 0.95958 1.69920 1.39459 0.99942 1.44162 0.86593 0.83569 0.77084 0.80378 1.20231 1.21208 1.20295 1.22339 0.95568 1.04103 0.97220 1.22658 0.94777 0.82491 1.01709 1.87873 1.78691 1.25065 1.38379 0.93009 0.92956 0.91953 0.91279 0.90811 0.91000 0.91066 0.89519 0.89825 0.92177 0.90814 0.92870 0.93308 0.90586 0.93970 0.95230 0.92717 0.88413 0.91619 0.89164 0.93361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.81 37.16 0.36 -0.90 16 2 C -0.12 -1.04 5.64 -26.73 -0.15 -1.19 16 3 C 0.09 0.95 2.37 -26.68 -0.06 0.89 16 4 H 0.06 0.61 6.72 -51.92 -0.35 0.26 16 5 C -0.14 -1.60 4.92 -26.60 -0.13 -1.73 16 6 C -0.07 -1.00 2.33 -90.44 -0.21 -1.22 16 7 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 8 C -0.14 -2.06 3.16 -27.89 -0.09 -2.15 16 9 C 0.51 10.15 7.37 -10.99 -0.08 10.07 16 10 O -0.54 -13.01 13.58 5.56 0.08 -12.94 16 11 N -0.60 -12.40 2.46 -175.06 -0.43 -12.83 16 12 C 0.11 1.77 5.98 -4.04 -0.02 1.75 16 13 C -0.17 -2.56 10.24 37.16 0.38 -2.18 16 14 C 0.25 6.36 5.20 -5.19 -0.03 6.34 16 15 C -0.52 -14.61 8.93 -34.44 -0.31 -14.92 16 16 H 0.06 1.60 7.43 -52.49 -0.39 1.21 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.90 -26.59 13.29 55.43 0.74 -25.85 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 C -0.15 -2.21 5.42 -26.49 -0.14 -2.36 16 24 C 0.06 0.76 6.57 37.30 0.25 1.01 16 25 O -0.38 -4.83 9.95 -35.23 -0.35 -5.18 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.59 7.82 -51.93 -0.41 0.19 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.14 7.18 -51.93 -0.37 0.77 16 34 H 0.08 1.08 4.29 -51.93 -0.22 0.85 16 35 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 36 H 0.07 1.15 7.89 -51.93 -0.41 0.74 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.72 7.22 -51.93 -0.37 0.34 16 39 H 0.08 1.38 7.27 -51.93 -0.38 1.01 16 40 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 41 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.68 5.94 -51.93 -0.31 1.38 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.62 6.49 -51.93 -0.34 0.28 16 LS Contribution 353.06 15.07 5.32 5.32 Total: -1.00 -31.75 353.06 -8.03 -39.79 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -8.03 Total: -0.16 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.33 Total: -4.97 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.31 Total: -38.68 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.27 Total: -18.11 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.75 -8.03 -39.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330779948.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.409 kcal (2) G-P(sol) polarization free energy of solvation -31.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds