Wall clock time and date at job start Tue Mar 31 2020 06:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08990 * 109.48344 * 54.99946 * 3 2 1 5 5 C 1.53091 * 109.47703 * 175.02229 * 3 2 1 6 6 C 1.53188 * 109.16177 * 177.57576 * 5 3 2 7 7 H 1.08994 * 109.52812 * 62.90391 * 6 5 3 8 8 C 1.52998 * 109.61695 * 183.12081 * 6 5 3 9 9 C 1.50695 * 109.47113 * 184.61407 * 8 6 5 10 10 O 1.21285 * 119.99829 * 0.02562 * 9 8 6 11 11 N 1.34771 * 120.00297 * 179.97438 * 9 8 6 12 12 C 1.46499 * 119.99844 * 0.02562 * 11 9 8 13 13 C 1.53001 * 109.47630 * 89.99559 * 12 11 9 14 14 C 1.46499 * 120.00323 * 179.97438 * 11 9 8 15 15 C 1.50700 * 109.46992 * 90.00193 * 14 11 9 16 16 H 1.08000 * 119.99946 * 0.02562 * 15 14 11 17 17 C 1.37878 * 120.00099 * 179.97438 * 15 14 11 18 18 N 1.31507 * 120.00048 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99961 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47205 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46869 * 120.00355 * 19 17 15 22 22 H 1.48498 * 109.47199 * 240.00124 * 19 17 15 23 23 C 1.53177 * 109.04628 * 303.03873 * 6 5 3 24 24 C 1.53094 * 109.16458 * 56.97015 * 23 6 5 25 25 O 1.42901 * 109.47795 * 294.97258 * 3 2 1 26 26 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 27 27 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 28 28 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 30 30 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 31 31 H 1.08995 * 109.52639 * 297.49431 * 5 3 2 32 32 H 1.09007 * 109.52386 * 57.69046 * 5 3 2 33 33 H 1.08998 * 109.47271 * 304.61296 * 8 6 5 34 34 H 1.09000 * 109.47087 * 64.61393 * 8 6 5 35 35 H 1.09003 * 109.47189 * 209.99856 * 12 11 9 36 36 H 1.08997 * 109.47005 * 329.99013 * 12 11 9 37 37 H 1.09003 * 109.46752 * 59.99901 * 13 12 11 38 38 H 1.08996 * 109.47192 * 179.97438 * 13 12 11 39 39 H 1.08995 * 109.46534 * 300.00033 * 13 12 11 40 40 H 1.08999 * 109.47455 * 210.00267 * 14 11 9 41 41 H 1.09003 * 109.47364 * 330.00666 * 14 11 9 42 42 H 0.96999 * 120.00568 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.52009 * 297.07009 * 23 6 5 44 44 H 1.08993 * 109.52332 * 176.87888 * 23 6 5 45 45 H 1.08998 * 109.48289 * 182.40539 * 24 23 6 46 46 H 1.09000 * 109.48658 * 62.37852 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9817 0.8417 5 6 3.5657 1.4445 0.1252 6 6 4.0734 2.8885 0.0636 7 1 3.6797 3.4496 0.9109 8 6 5.6027 2.8977 0.1096 9 6 6.0951 4.3209 0.1631 10 8 5.3009 5.2377 0.1647 11 7 7.4177 4.5752 0.2102 12 6 8.3769 3.4678 0.2088 13 6 8.7545 3.1218 -1.2329 14 6 7.8964 5.9588 0.2616 15 6 8.0173 6.3954 1.6989 16 1 7.7634 5.7105 2.4945 17 6 8.4531 7.6688 1.9983 18 7 8.7627 8.5025 1.0296 19 14 8.6036 8.2097 3.7799 20 1 8.1983 7.0938 4.6719 21 1 10.0117 8.5851 4.0659 22 1 7.7212 9.3800 4.0182 23 6 3.5962 3.5308 -1.2426 24 6 2.0692 3.4481 -1.3148 25 8 1.6625 2.0813 -1.2213 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8538 0.9973 1.0766 32 1 3.9993 0.8709 -0.6941 33 1 5.9427 2.3621 0.9959 34 1 5.9960 2.4105 -0.7825 35 1 9.2715 3.7613 0.7582 36 1 7.9272 2.5970 0.6856 37 1 9.2043 3.9928 -1.7097 38 1 9.4685 2.2983 -1.2339 39 1 7.8600 2.8283 -1.7822 40 1 8.8714 6.0242 -0.2212 41 1 7.1900 6.6072 -0.2568 42 1 9.0689 9.3985 1.2401 43 1 4.0302 2.9993 -2.0896 44 1 3.9062 4.5754 -1.2693 45 1 1.7269 3.8653 -2.2618 46 1 1.6351 4.0137 -0.4903 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330779950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:37 Heat of formation + Delta-G solvation = -112.839771 kcal Electronic energy + Delta-G solvation = -23357.458101 eV Core-core repulsion = 20053.012224 eV Total energy + Delta-G solvation = -3304.445877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.91729 -38.73631 -35.45117 -34.38822 -34.01921 -32.77421 -30.09766 -29.82051 -29.07510 -26.78507 -24.37091 -23.47210 -22.99491 -22.35105 -21.03033 -19.92836 -18.20160 -16.59359 -16.39453 -16.23887 -15.86649 -15.41080 -15.12460 -14.58736 -14.36792 -13.85430 -13.83583 -13.71168 -13.34301 -13.16526 -12.77393 -12.59043 -12.28869 -11.99594 -11.82513 -11.72124 -11.70346 -11.34142 -11.22334 -11.16138 -11.02468 -10.90173 -10.74702 -10.69122 -10.52876 -10.35821 -10.13580 -10.11271 -9.59911 -9.42046 -8.73935 -8.43947 -7.62837 -6.04416 -4.08972 3.28961 3.36275 3.39666 3.48130 3.79487 3.94546 4.43898 4.58782 4.78536 4.90608 4.94599 5.05505 5.11983 5.23907 5.29670 5.31940 5.34286 5.44367 5.47440 5.55349 5.61387 5.68210 5.68391 5.77927 5.79988 5.82129 5.86764 5.94571 5.99054 6.03261 6.09158 6.14588 6.22622 6.24277 6.49514 6.50727 6.53565 7.09300 7.30224 7.45990 7.57928 7.92570 8.24457 8.46727 8.91448 9.14048 9.56348 11.03646 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.022172 B = 0.003743 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.557926 B = 7477.995631 C = 7926.453134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.145 4.145 6 C -0.072 4.072 7 H 0.078 0.922 8 C -0.135 4.135 9 C 0.505 3.495 10 O -0.541 6.541 11 N -0.599 5.599 12 C 0.107 3.893 13 C -0.169 4.169 14 C 0.246 3.754 15 C -0.524 4.524 16 H 0.057 0.943 17 C 0.060 3.940 18 N -0.895 5.895 19 Si 0.897 3.103 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.154 4.154 24 C 0.064 3.936 25 O -0.383 6.383 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.030 0.970 41 H 0.042 0.958 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.113 -17.308 -3.640 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.182 4.182 6 C -0.091 4.091 7 H 0.096 0.904 8 C -0.175 4.175 9 C 0.292 3.708 10 O -0.419 6.419 11 N -0.330 5.330 12 C -0.017 4.017 13 C -0.227 4.227 14 C 0.127 3.873 15 C -0.563 4.563 16 H 0.075 0.925 17 C -0.142 4.142 18 N -0.534 5.534 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.192 4.192 24 C -0.013 4.013 25 O -0.302 6.302 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.544 -16.713 -3.815 19.620 hybrid contribution 0.559 0.540 1.213 1.441 sum -8.985 -16.173 -2.602 18.683 Atomic orbital electron populations 1.21717 0.95446 1.01250 1.02295 1.21543 0.96548 0.94679 1.02519 1.22096 0.93582 0.93668 0.87363 0.92608 1.22295 0.96096 0.97339 1.02520 1.20913 0.93888 0.95049 0.99217 0.90357 1.21767 0.96377 0.96008 1.03353 1.20338 0.82718 0.90567 0.77192 1.90616 1.54134 1.46920 1.50255 1.48275 1.04753 1.08993 1.71022 1.21394 0.94289 0.89756 0.96298 1.22217 1.01113 1.01582 0.97806 1.19245 0.95016 0.75779 0.97297 1.21477 1.44225 0.98305 0.92302 0.92502 1.24938 0.95340 0.96349 0.97535 1.69939 1.45222 1.06759 1.31505 0.86456 0.77547 0.78688 0.84808 1.19838 1.20983 1.20879 1.22352 0.95795 1.03998 0.97039 1.22565 0.94540 0.82372 1.01773 1.87866 1.78751 1.25197 1.38395 0.93004 0.91941 0.92996 0.91236 0.90817 0.91105 0.91145 0.89640 0.89712 0.90119 0.91756 0.92111 0.92245 0.93069 0.95187 0.93964 0.92801 0.92001 0.88415 0.89168 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.81 37.16 0.36 -0.93 16 2 C -0.12 -1.05 5.64 -26.73 -0.15 -1.20 16 3 C 0.09 1.01 2.64 -26.68 -0.07 0.94 16 4 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 5 C -0.14 -1.60 4.71 -26.59 -0.13 -1.72 16 6 C -0.07 -1.00 1.92 -90.43 -0.17 -1.17 16 7 H 0.08 1.24 7.96 -51.93 -0.41 0.82 16 8 C -0.13 -1.96 3.74 -27.89 -0.10 -2.06 16 9 C 0.50 10.22 7.41 -10.99 -0.08 10.14 16 10 O -0.54 -13.09 13.56 5.55 0.08 -13.02 16 11 N -0.60 -12.52 2.46 -175.06 -0.43 -12.95 16 12 C 0.11 1.70 5.93 -4.04 -0.02 1.68 16 13 C -0.17 -2.26 10.24 37.16 0.38 -1.88 16 14 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 15 C -0.52 -14.90 9.39 -34.44 -0.32 -15.22 16 16 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.90 -26.69 13.29 55.43 0.74 -25.96 16 19 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 23 C -0.15 -2.21 5.12 -26.59 -0.14 -2.35 16 24 C 0.06 0.82 6.84 37.21 0.25 1.08 16 25 O -0.38 -4.94 9.94 -35.23 -0.35 -5.29 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.60 7.82 -51.93 -0.41 0.20 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.11 7.40 -51.93 -0.38 0.72 16 34 H 0.08 1.08 7.19 -51.93 -0.37 0.71 16 35 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 36 H 0.06 0.85 6.44 -51.93 -0.33 0.52 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.65 7.22 -51.93 -0.38 0.28 16 40 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 41 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 42 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.10 1.69 6.03 -51.93 -0.31 1.38 16 45 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 361.57 15.07 5.45 5.45 Total: -1.00 -32.20 361.57 -8.30 -40.50 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.44 Total: -0.96 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: -0.31 Total: -4.67 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.31 Total: -38.91 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.28 Total: -18.31 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.20 -8.30 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330779950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.342 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds