Wall clock time and date at job start Tue Mar 31 2020 05:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53007 * 109.46519 * 2 1 4 4 C 1.52993 * 109.47051 * 119.99587 * 2 1 3 5 5 H 1.08993 * 109.48292 * 60.02865 * 4 2 1 6 6 C 1.53100 * 109.49159 * 180.02562 * 4 2 1 7 7 C 1.53173 * 109.16596 * 177.59951 * 6 4 2 8 8 H 1.08997 * 109.61981 * 183.10887 * 7 6 4 9 9 C 1.53000 * 109.54424 * 62.88006 * 7 6 4 10 10 C 1.50698 * 109.46910 * 175.44473 * 9 7 6 11 11 O 1.21276 * 120.00423 * 0.02562 * 10 9 7 12 12 N 1.34782 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.46504 * 119.99774 * 0.02562 * 12 10 9 14 14 C 1.46495 * 120.00029 * 179.97438 * 12 10 9 15 15 C 1.50702 * 109.47574 * 269.99868 * 14 12 10 16 16 H 1.08002 * 119.99441 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00075 * 180.02562 * 15 14 12 18 18 N 1.31514 * 120.00481 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99886 * 179.73007 * 17 15 14 20 20 H 1.48494 * 109.47225 * 180.27306 * 19 17 15 21 21 H 1.48506 * 109.46866 * 300.27330 * 19 17 15 22 22 H 1.48498 * 109.47306 * 60.26614 * 19 17 15 23 23 C 1.53186 * 109.03363 * 303.01593 * 7 6 4 24 24 C 1.53084 * 109.16242 * 56.98224 * 23 7 6 25 25 O 1.42904 * 109.48247 * 300.00158 * 4 2 1 26 26 H 1.09000 * 109.46933 * 60.00840 * 1 2 3 27 27 H 1.08997 * 109.46446 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47413 * 300.00171 * 1 2 3 29 29 H 1.08998 * 109.47413 * 239.99829 * 2 1 3 30 30 H 1.08999 * 109.46558 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.46832 * 299.99222 * 3 2 1 32 32 H 1.08998 * 109.47418 * 59.99832 * 3 2 1 33 33 H 1.08993 * 109.52318 * 57.68588 * 6 4 2 34 34 H 1.09005 * 109.51346 * 297.50406 * 6 4 2 35 35 H 1.09004 * 109.46898 * 55.45041 * 9 7 6 36 36 H 1.08996 * 109.47779 * 295.44692 * 9 7 6 37 37 H 1.08997 * 109.47054 * 270.00108 * 13 12 10 38 38 H 1.08994 * 109.47131 * 30.00106 * 13 12 10 39 39 H 1.09000 * 109.46811 * 149.99902 * 13 12 10 40 40 H 1.09009 * 109.47230 * 150.00208 * 14 12 10 41 41 H 1.08998 * 109.47557 * 30.00700 * 14 12 10 42 42 H 0.97005 * 119.99656 * 359.72741 * 18 17 15 43 43 H 1.09003 * 109.51871 * 176.88753 * 23 7 6 44 44 H 1.08994 * 109.51898 * 297.01122 * 23 7 6 45 45 H 1.09002 * 109.48505 * 62.37555 * 24 23 7 46 46 H 1.09002 * 109.48317 * 182.40316 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6772 -1.7489 1.2492 6 6 3.5710 -0.7209 1.2501 7 6 4.0733 -1.3912 2.5325 8 1 5.1618 -1.3459 2.5669 9 6 3.6208 -2.8525 2.5572 10 6 4.2087 -3.5400 3.7625 11 8 4.9192 -2.9220 4.5267 12 7 3.9449 -4.8418 3.9913 13 6 3.0870 -5.5886 3.0678 14 6 4.5168 -5.5103 5.1626 15 6 5.8529 -6.1051 4.7991 16 1 6.2377 -5.9956 3.7959 17 6 6.5840 -6.7889 5.7472 18 7 6.1157 -6.9217 6.9689 19 14 8.2367 -7.5326 5.2945 20 1 8.8137 -8.2153 6.4803 21 1 8.0529 -8.5166 4.1975 22 1 9.1573 -6.4573 4.8457 23 6 3.4913 -0.6539 3.7425 24 6 1.9635 -0.6568 3.6455 25 8 1.5637 -0.0476 2.4162 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6765 1.9565 0.8899 33 1 3.9351 0.3056 1.2088 34 1 3.9357 -1.2727 0.3836 35 1 3.9612 -3.3537 1.6511 36 1 2.5329 -2.8952 2.6093 37 1 2.0492 -5.5094 3.3915 38 1 3.1870 -5.1753 2.0643 39 1 3.3865 -6.6366 3.0607 40 1 3.8446 -6.3021 5.4934 41 1 4.6481 -4.7859 5.9664 42 1 5.2576 -6.5351 7.2041 43 1 3.7991 -1.1579 4.6587 44 1 3.8547 0.3736 3.7523 45 1 1.5991 -1.6836 3.6772 46 1 1.5451 -0.0966 4.4817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330780820.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:00 Heat of formation + Delta-G solvation = -108.692636 kcal Electronic energy + Delta-G solvation = -23725.066764 eV Core-core repulsion = 20420.800721 eV Total energy + Delta-G solvation = -3304.266044 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36100 -38.74123 -35.56369 -34.99557 -34.22258 -32.84135 -30.09329 -29.00081 -27.37855 -27.02160 -25.58584 -24.58241 -23.54759 -22.74569 -20.35764 -19.51310 -18.09909 -16.96027 -16.64503 -16.20665 -15.94610 -15.49167 -15.06157 -14.84650 -14.31493 -14.11767 -13.78026 -13.71370 -13.40067 -13.11931 -12.90731 -12.38458 -12.35888 -12.24713 -12.05971 -11.80205 -11.65945 -11.62009 -11.44115 -11.25706 -11.05681 -10.92774 -10.87840 -10.78485 -10.58630 -10.38943 -10.11288 -10.06241 -9.27603 -9.14129 -8.88636 -8.40261 -7.63244 -6.40145 -4.12250 3.34072 3.41772 3.45752 3.63126 3.75473 3.86738 4.50683 4.52363 4.65472 4.84732 4.86053 4.95365 4.96539 5.13723 5.24207 5.28310 5.33533 5.38435 5.43916 5.50515 5.53415 5.59777 5.65396 5.67768 5.69505 5.75790 5.77414 5.82529 5.92072 5.94814 6.09953 6.11127 6.14267 6.22449 6.31500 6.38608 6.47634 6.79433 7.10845 7.25691 7.38516 8.02341 8.27785 8.41512 8.76186 9.01108 9.57688 10.97151 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.032643 B = 0.003572 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.557942 B = 7837.225400 C = 7858.791959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.094 3.906 5 H 0.057 0.943 6 C -0.147 4.147 7 C -0.072 4.072 8 H 0.082 0.918 9 C -0.140 4.140 10 C 0.504 3.496 11 O -0.539 6.539 12 N -0.601 5.601 13 C 0.084 3.916 14 C 0.235 3.765 15 C -0.606 4.606 16 H 0.050 0.950 17 C 0.019 3.981 18 N -0.909 5.909 19 Si 1.072 2.928 20 H -0.281 1.281 21 H -0.288 1.288 22 H -0.288 1.288 23 C -0.155 4.155 24 C 0.060 3.940 25 O -0.377 6.377 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.020 0.980 41 H 0.033 0.967 42 H 0.267 0.733 43 H 0.096 0.904 44 H 0.066 0.934 45 H 0.047 0.953 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.257 12.115 -14.519 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.036 3.964 5 H 0.074 0.926 6 C -0.184 4.184 7 C -0.090 4.090 8 H 0.101 0.899 9 C -0.180 4.180 10 C 0.291 3.709 11 O -0.417 6.417 12 N -0.333 5.333 13 C -0.060 4.060 14 C 0.116 3.884 15 C -0.645 4.645 16 H 0.069 0.931 17 C -0.185 4.185 18 N -0.545 5.545 19 Si 0.899 3.101 20 H -0.206 1.206 21 H -0.215 1.215 22 H -0.214 1.214 23 C -0.192 4.192 24 C -0.016 4.016 25 O -0.296 6.296 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.038 0.962 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.065 0.935 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.727 11.705 -13.497 20.342 hybrid contribution -1.119 0.400 -0.711 1.385 sum -10.847 12.105 -14.208 21.588 Atomic orbital electron populations 1.21771 0.94801 1.01616 1.01962 1.21156 0.96404 0.97054 0.96003 1.21822 1.00967 0.95634 1.01826 1.22118 0.92990 0.95395 0.85920 0.92556 1.22330 0.96121 1.01909 0.98058 1.20904 1.01401 0.92485 0.94260 0.89933 1.21879 1.01617 0.96439 0.98100 1.20358 0.81463 0.82098 0.86940 1.90622 1.37983 1.64542 1.48541 1.47993 1.48457 1.09571 1.27244 1.21630 0.93442 0.98202 0.92728 1.19321 0.93742 0.91939 0.83447 1.22246 1.04559 1.38215 0.99503 0.93133 1.25820 1.03982 0.95460 0.93226 1.70807 1.21001 1.43555 1.19172 0.83507 0.74838 0.76184 0.75531 1.20627 1.21453 1.21399 1.22298 0.95319 1.01119 1.00485 1.22615 0.94880 0.97728 0.86384 1.87867 1.74572 1.53789 1.13352 0.93011 0.93012 0.91779 0.90366 0.92548 0.93195 0.91789 0.90508 0.91124 0.89488 0.89758 0.93827 0.92323 0.90820 0.96219 0.94882 0.92243 0.88585 0.91541 0.93480 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.05 37.16 0.34 -0.89 16 2 C -0.09 -0.78 2.81 -90.62 -0.25 -1.03 16 3 C -0.15 -1.27 8.70 37.16 0.32 -0.94 16 4 C 0.09 0.99 2.10 -26.68 -0.06 0.93 16 5 H 0.06 0.59 6.71 -51.93 -0.35 0.24 16 6 C -0.15 -1.60 4.63 -26.59 -0.12 -1.72 16 7 C -0.07 -0.99 2.34 -90.43 -0.21 -1.20 16 8 H 0.08 1.30 7.96 -51.93 -0.41 0.88 16 9 C -0.14 -2.04 3.16 -27.88 -0.09 -2.13 16 10 C 0.50 10.30 7.37 -10.98 -0.08 10.22 16 11 O -0.54 -13.15 13.56 5.56 0.08 -13.08 16 12 N -0.60 -12.78 2.86 -182.96 -0.52 -13.30 16 13 C 0.08 1.34 10.24 59.85 0.61 1.95 16 14 C 0.24 6.17 4.47 -5.20 -0.02 6.15 16 15 C -0.61 -17.53 9.39 -34.44 -0.32 -17.85 16 16 H 0.05 1.47 7.81 -52.49 -0.41 1.06 16 17 C 0.02 0.56 5.46 -17.82 -0.10 0.47 16 18 N -0.91 -27.92 13.65 55.43 0.76 -27.17 16 19 Si 1.07 25.72 29.90 -169.99 -5.08 20.63 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.15 -2.19 5.40 -26.59 -0.14 -2.34 16 24 C 0.06 0.76 6.57 37.20 0.24 1.00 16 25 O -0.38 -4.59 9.06 -35.23 -0.32 -4.91 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.48 6.38 -51.93 -0.33 0.15 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.63 7.68 -51.93 -0.40 0.23 16 33 H 0.08 0.83 6.32 -51.93 -0.33 0.50 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 36 H 0.08 1.08 4.99 -51.93 -0.26 0.82 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 39 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 40 H 0.02 0.52 7.94 -51.92 -0.41 0.11 16 41 H 0.03 0.96 7.28 -51.93 -0.38 0.58 16 42 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 43 H 0.10 1.66 5.92 -51.93 -0.31 1.35 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.60 6.50 -51.93 -0.34 0.26 16 46 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 349.49 15.07 5.27 5.27 Total: -1.00 -33.18 349.49 -7.65 -40.82 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.93 Total: -0.88 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 0.11 Total: -7.39 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.23 Total: -40.47 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.24 Total: -17.99 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.18 -7.65 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330780820.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.872 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds