Wall clock time and date at job start Tue Mar 31 2020 05:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46767 * 2 1 4 4 C 1.52994 * 109.47010 * 119.99606 * 2 1 3 5 5 H 1.08993 * 109.49332 * 300.03273 * 4 2 1 6 6 C 1.53090 * 109.47929 * 180.02562 * 4 2 1 7 7 C 1.53179 * 109.16577 * 182.40961 * 6 4 2 8 8 H 1.09002 * 109.54198 * 297.11482 * 7 6 4 9 9 C 1.53000 * 109.54434 * 176.93705 * 7 6 4 10 10 C 1.50703 * 109.46738 * 175.17893 * 9 7 6 11 11 O 1.21275 * 120.00561 * 359.97438 * 10 9 7 12 12 N 1.34783 * 119.99550 * 179.97438 * 10 9 7 13 13 C 1.46500 * 120.00185 * 0.02562 * 12 10 9 14 14 C 1.46503 * 119.99774 * 179.97438 * 12 10 9 15 15 C 1.50709 * 109.46786 * 90.00240 * 14 12 10 16 16 H 1.07993 * 119.99977 * 359.97438 * 15 14 12 17 17 C 1.37873 * 119.99869 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00100 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99958 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46959 * 60.00320 * 19 17 15 21 21 H 1.48505 * 109.47222 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47454 * 300.00043 * 19 17 15 23 23 C 1.53178 * 109.03443 * 56.97942 * 7 6 4 24 24 C 1.53090 * 109.16307 * 303.02234 * 23 7 6 25 25 O 1.42899 * 109.41602 * 57.60933 * 24 23 7 26 26 H 1.09002 * 109.47130 * 60.00363 * 1 2 3 27 27 H 1.09000 * 109.46710 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47440 * 300.00052 * 1 2 3 29 29 H 1.09004 * 109.47418 * 239.99965 * 2 1 3 30 30 H 1.08998 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46999 * 299.99717 * 3 2 1 32 32 H 1.08994 * 109.47183 * 59.99790 * 3 2 1 33 33 H 1.09000 * 109.52297 * 62.50679 * 6 4 2 34 34 H 1.09000 * 109.52651 * 302.31444 * 6 4 2 35 35 H 1.09000 * 109.47118 * 295.17638 * 9 7 6 36 36 H 1.08997 * 109.47330 * 55.17854 * 9 7 6 37 37 H 1.09001 * 109.47335 * 89.99841 * 13 12 10 38 38 H 1.08998 * 109.47002 * 210.00046 * 13 12 10 39 39 H 1.09004 * 109.46675 * 329.99714 * 13 12 10 40 40 H 1.08999 * 109.47014 * 209.99979 * 14 12 10 41 41 H 1.08996 * 109.46959 * 330.00367 * 14 12 10 42 42 H 0.96997 * 120.00415 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.52205 * 62.93144 * 23 7 6 44 44 H 1.09000 * 109.52518 * 183.11138 * 23 7 6 45 45 H 1.08998 * 109.48184 * 297.61931 * 24 23 7 46 46 H 1.09012 * 109.48510 * 177.59594 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 1.6764 -0.2079 2.1394 6 6 3.5709 -0.7207 1.2498 7 6 4.0735 -1.4961 2.4714 8 1 3.7506 -0.9914 3.3819 9 6 5.6016 -1.5665 2.4398 10 6 6.1003 -2.2253 3.7001 11 8 5.3113 -2.6010 4.5411 12 7 7.4232 -2.3969 3.8927 13 6 8.3763 -1.9425 2.8772 14 6 7.9080 -3.0368 5.1182 15 6 8.0020 -4.5256 4.9041 16 1 7.7276 -4.9524 3.9508 17 6 8.4382 -5.3427 5.9253 18 7 8.7719 -4.8230 7.0864 19 14 8.5540 -7.1882 5.6602 20 1 9.4963 -7.4702 4.5476 21 1 9.0468 -7.8367 6.9019 22 1 7.2117 -7.7246 5.3201 23 6 3.4926 -2.9131 2.4375 24 6 1.9647 -2.8288 2.3910 25 8 1.5654 -2.0691 1.2485 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9563 0.8899 33 1 3.9348 0.3057 1.2949 34 1 3.9356 -1.1978 0.3402 35 1 5.9207 -2.1483 1.5750 36 1 6.0104 -0.5585 2.3704 37 1 8.6648 -0.9121 3.0848 38 1 9.2609 -2.5789 2.8986 39 1 7.9122 -1.9986 1.8925 40 1 8.8930 -2.6428 5.3685 41 1 7.2158 -2.8300 5.9343 42 1 9.0792 -5.3978 7.8048 43 1 3.8558 -3.4345 1.5518 44 1 3.8006 -3.4546 3.3319 45 1 1.5998 -2.3434 3.2962 46 1 1.5470 -3.8335 2.3236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330780821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:03 Heat of formation + Delta-G solvation = -130.388939 kcal Electronic energy + Delta-G solvation = -23305.164589 eV Core-core repulsion = 19999.957723 eV Total energy + Delta-G solvation = -3305.206866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 283.193 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.18505 -40.11269 -36.74947 -36.22319 -35.50491 -34.70795 -31.06805 -30.70115 -29.08361 -27.86269 -27.21967 -25.42671 -24.57984 -23.77376 -21.13592 -20.98596 -19.79398 -18.69919 -17.80919 -17.33075 -17.12914 -16.92056 -16.55690 -16.07817 -15.56446 -15.32098 -15.07679 -14.67779 -14.43131 -14.16345 -13.97473 -13.70340 -13.56572 -13.44046 -13.26338 -13.12510 -12.95587 -12.85365 -12.66409 -12.53699 -12.39974 -12.20549 -12.07152 -11.97060 -11.78319 -11.71758 -11.63733 -11.30039 -11.05456 -10.65918 -10.56108 -10.23076 -9.38329 -8.23617 -6.38965 1.34898 1.39139 1.46538 1.89515 2.32507 2.48742 2.83232 3.05456 3.60202 3.71448 3.81390 3.99254 4.04259 4.18598 4.25476 4.34446 4.38140 4.40390 4.50105 4.55156 4.63632 4.71247 4.77219 4.84142 4.85591 4.86222 4.89923 4.96437 4.99756 5.05774 5.07377 5.12992 5.18818 5.22752 5.28454 5.35017 5.42084 5.51015 5.52033 5.55982 5.85494 6.05484 6.34629 6.69067 6.83226 7.27740 7.53913 8.83083 Molecular weight = 283.19amu Principal moments of inertia in cm(-1) A = 0.028159 B = 0.003549 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.105564 B = 7888.260936 C = 8468.599268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.146 4.146 4 C 0.089 3.911 5 H 0.050 0.950 6 C -0.134 4.134 7 C -0.069 4.069 8 H 0.057 0.943 9 C -0.119 4.119 10 C 0.491 3.509 11 O -0.592 6.592 12 N -0.615 5.615 13 C 0.078 3.922 14 C 0.259 3.741 15 C -0.543 4.543 16 H 0.052 0.948 17 C 0.007 3.993 18 N -0.930 5.930 19 Si 0.967 3.033 20 H -0.260 1.260 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.154 4.154 24 C 0.069 3.931 25 O -0.390 6.390 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.109 0.891 36 H 0.120 0.880 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.021 0.979 41 H -0.004 1.004 42 H 0.267 0.733 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.564 12.274 -17.569 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.103 4.103 3 C -0.203 4.203 4 C 0.031 3.969 5 H 0.068 0.932 6 C -0.172 4.172 7 C -0.088 4.088 8 H 0.075 0.925 9 C -0.158 4.158 10 C 0.281 3.719 11 O -0.474 6.474 12 N -0.346 5.346 13 C -0.064 4.064 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.071 0.929 17 C -0.192 4.192 18 N -0.569 5.569 19 Si 0.791 3.209 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.191 4.191 24 C -0.007 4.007 25 O -0.309 6.309 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.138 0.862 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.039 0.961 41 H 0.014 0.986 42 H 0.076 0.924 43 H 0.085 0.915 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.976 11.979 -17.111 23.596 hybrid contribution 0.482 -1.206 1.044 1.667 sum -10.494 10.773 -16.067 22.007 Atomic orbital electron populations 1.21756 0.94739 1.01616 1.01907 1.21103 0.96470 0.96435 0.96309 1.21872 1.01885 0.93898 1.02633 1.22306 0.93218 0.82615 0.98723 0.93187 1.22284 0.95681 1.01707 0.97497 1.20893 0.93255 0.95895 0.98793 0.92482 1.21751 0.96538 1.03007 0.94503 1.21498 0.81800 0.79151 0.89479 1.90597 1.55638 1.53056 1.48066 1.48241 1.06687 1.58414 1.21288 1.21924 0.93202 0.99908 0.91338 1.18709 0.93103 0.91800 0.82607 1.21682 1.44340 0.93229 0.98888 0.92934 1.25874 0.94690 1.04109 0.94547 1.70046 1.45291 1.37566 1.04030 0.85478 0.78568 0.78774 0.78063 1.18407 1.20291 1.20314 1.22269 0.96698 0.97919 1.02256 1.22474 0.93639 0.96421 0.88214 1.87858 1.74982 1.24157 1.43928 0.91518 0.93348 0.93009 0.90574 0.91352 0.91102 0.92512 0.88484 0.90204 0.87314 0.86227 0.91129 0.91892 0.88662 0.96149 0.98605 0.92386 0.91532 0.92341 0.93835 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.05 71.98 0.65 -1.60 16 2 C -0.08 -1.34 2.72 -10.80 -0.03 -1.37 16 3 C -0.15 -1.70 8.84 71.98 0.64 -1.07 16 4 C 0.09 1.82 2.22 30.62 0.07 1.88 16 5 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 6 C -0.13 -2.55 4.27 30.68 0.13 -2.42 16 7 C -0.07 -1.84 1.91 -10.67 -0.02 -1.86 16 8 H 0.06 1.75 7.96 -2.39 -0.02 1.73 16 9 C -0.12 -3.14 3.74 29.85 0.11 -3.02 16 10 C 0.49 20.11 7.41 87.66 0.65 20.76 16 11 O -0.59 -30.24 13.57 -3.01 -0.04 -30.28 16 12 N -0.61 -26.13 2.86 -851.10 -2.43 -28.56 16 13 C 0.08 2.30 10.24 127.77 1.31 3.61 16 14 C 0.26 14.24 5.16 85.64 0.44 14.68 16 15 C -0.54 -31.76 9.39 25.60 0.24 -31.52 16 16 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 17 C 0.01 0.39 5.46 84.65 0.46 0.85 16 18 N -0.93 -57.04 13.29 21.45 0.28 -56.75 16 19 Si 0.97 45.38 29.54 68.60 2.03 47.41 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 C -0.15 -4.65 5.13 30.68 0.16 -4.49 16 24 C 0.07 1.85 6.84 72.01 0.49 2.35 16 25 O -0.39 -9.85 9.74 -148.98 -1.45 -11.30 16 26 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.90 7.69 -2.39 -0.02 0.89 16 28 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.07 0.71 6.49 -2.39 -0.02 0.69 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.42 6.57 -2.39 -0.02 1.40 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.11 2.45 7.40 -2.39 -0.02 2.43 16 36 H 0.12 2.38 8.11 -2.39 -0.02 2.36 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.97 8.07 -2.39 -0.02 1.95 16 39 H 0.09 2.06 6.44 -2.38 -0.02 2.05 16 40 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 41 H 0.00 -0.27 7.42 -2.39 -0.02 -0.28 16 42 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 2.27 6.06 -2.39 -0.01 2.26 16 45 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -74.28 358.66 4.61 -69.67 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.92 Total: 13.05 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.30 Total: -3.23 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.15 Total: -85.32 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.49 Total: -41.59 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -74.28 4.61 -69.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330780821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.719 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds